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Conserved domains on  [gi|493798535|ref|WP_006746504|]
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BPSS1780 family membrane protein [Thioalkalivibrio paradoxus]

Protein Classification

DUF2189 domain-containing protein( domain architecture ID 2969)

protein contains domain DUF2189

Gene Ontology:  GO:0016020

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
BPSS1780_fam NF041043
BPSS1780 family membrane protein;
10-234 3.33e-27

BPSS1780 family membrane protein;


:

Pssm-ID: 468972  Cd Length: 246  Bit Score: 104.66  E-value: 3.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  10 RGWGLFGRGWKIFTGG-VVPWILALIVFFVLSIVLNLIPLIGGLVLAVITPALIAGFLKLADEIEAGREARVGHLFAPLQ 88
Cdd:NF041043   3 TGWQWIKEGFALFRRQpLALWILFFLYLFLILILLSLVPLIGQLLALLLGPVFSAGLMAACREIDEGRPLEPSDLFAGFR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  89 DADRR--NPLLLLGLLALVASVVLAVVAAAFVGGAVMLDDTSGFGAGMMPLAGVGFFGLIVLFLLYLAVFAALAFSIPLV 166
Cdd:NF041043  83 DRLGPllLLGLLYLLGSLLIGLLLSLLDGGLLLAALLGGGTAEPAEAAAAAAAGLLLALLVALLLYIPLAMAFWFAPALV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535 167 YFRGVPIGEAVLASIQGTITNLAPLIIFSVIYFVLAMIAM----------------IPLGLGFLILGPVVLGAVYGAYRE 230
Cdd:NF041043 163 AWHGMPPGKALFFSFVACLRNLLAFLVYGLIWAVLFFLAPllvglvlallgaalaaLPLLLGLLVLAPVLYCSFYASYRD 242

                 ....
gi 493798535 231 IFPE 234
Cdd:NF041043 243 IFGA 246
 
Name Accession Description Interval E-value
BPSS1780_fam NF041043
BPSS1780 family membrane protein;
10-234 3.33e-27

BPSS1780 family membrane protein;


Pssm-ID: 468972  Cd Length: 246  Bit Score: 104.66  E-value: 3.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  10 RGWGLFGRGWKIFTGG-VVPWILALIVFFVLSIVLNLIPLIGGLVLAVITPALIAGFLKLADEIEAGREARVGHLFAPLQ 88
Cdd:NF041043   3 TGWQWIKEGFALFRRQpLALWILFFLYLFLILILLSLVPLIGQLLALLLGPVFSAGLMAACREIDEGRPLEPSDLFAGFR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  89 DADRR--NPLLLLGLLALVASVVLAVVAAAFVGGAVMLDDTSGFGAGMMPLAGVGFFGLIVLFLLYLAVFAALAFSIPLV 166
Cdd:NF041043  83 DRLGPllLLGLLYLLGSLLIGLLLSLLDGGLLLAALLGGGTAEPAEAAAAAAAGLLLALLVALLLYIPLAMAFWFAPALV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535 167 YFRGVPIGEAVLASIQGTITNLAPLIIFSVIYFVLAMIAM----------------IPLGLGFLILGPVVLGAVYGAYRE 230
Cdd:NF041043 163 AWHGMPPGKALFFSFVACLRNLLAFLVYGLIWAVLFFLAPllvglvlallgaalaaLPLLLGLLVLAPVLYCSFYASYRD 242

                 ....
gi 493798535 231 IFPE 234
Cdd:NF041043 243 IFGA 246
COG5473 COG5473
Uncharacterized membrane protein [Function unknown];
3-236 1.26e-17

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444224  Cd Length: 263  Bit Score: 79.51  E-value: 1.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535   3 INSMALNRGWGLFGRGWKIFTGGVVPWILALIVFFVLSIVLN-----------LIPLIGGLVLavITPALIAGFLKLADE 71
Cdd:COG5473   18 VRRVTLADPLDWLAAGWRDFRAAPGISLFYGLIFALIGLLLLlvllaaglpplLFPLAAGFLL--VGPFLAVGLYEVSRR 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  72 IEAGREARVGHLFAPLQDADRRNPLLLLGLLALVASVVLAVVAAAFVGGAVMLDDTSGFGAGMMP-LAGVGFF--GLIVL 148
Cdd:COG5473   96 LERGEPPSLGDALAVWRRNLGQLALLGLVLLLLFLAWLRAAALLFALFFGGGPPSLSGFLAAVFLtPEGLTFLavGTLVG 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535 149 FLLYLAVFAALAFSIPLVYFRGVPIGEAVLASIQGTITNLAPLIIFSVIYFVLAMIAMIPLGLGFLILGPVVLGAVYGAY 228
Cdd:COG5473  176 AVFAALVFAISVVSIPLLLDRDVDAVTAMITSVRAVLANPVPMLLWAALIAALTLLGMLPLFLGLIVVLPVLGHATWHAY 255

                 ....*...
gi 493798535 229 REIFPEPE 236
Cdd:COG5473  256 RDLVAPEA 263
 
Name Accession Description Interval E-value
BPSS1780_fam NF041043
BPSS1780 family membrane protein;
10-234 3.33e-27

BPSS1780 family membrane protein;


Pssm-ID: 468972  Cd Length: 246  Bit Score: 104.66  E-value: 3.33e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  10 RGWGLFGRGWKIFTGG-VVPWILALIVFFVLSIVLNLIPLIGGLVLAVITPALIAGFLKLADEIEAGREARVGHLFAPLQ 88
Cdd:NF041043   3 TGWQWIKEGFALFRRQpLALWILFFLYLFLILILLSLVPLIGQLLALLLGPVFSAGLMAACREIDEGRPLEPSDLFAGFR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  89 DADRR--NPLLLLGLLALVASVVLAVVAAAFVGGAVMLDDTSGFGAGMMPLAGVGFFGLIVLFLLYLAVFAALAFSIPLV 166
Cdd:NF041043  83 DRLGPllLLGLLYLLGSLLIGLLLSLLDGGLLLAALLGGGTAEPAEAAAAAAAGLLLALLVALLLYIPLAMAFWFAPALV 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535 167 YFRGVPIGEAVLASIQGTITNLAPLIIFSVIYFVLAMIAM----------------IPLGLGFLILGPVVLGAVYGAYRE 230
Cdd:NF041043 163 AWHGMPPGKALFFSFVACLRNLLAFLVYGLIWAVLFFLAPllvglvlallgaalaaLPLLLGLLVLAPVLYCSFYASYRD 242

                 ....
gi 493798535 231 IFPE 234
Cdd:NF041043 243 IFGA 246
COG5473 COG5473
Uncharacterized membrane protein [Function unknown];
3-236 1.26e-17

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444224  Cd Length: 263  Bit Score: 79.51  E-value: 1.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535   3 INSMALNRGWGLFGRGWKIFTGGVVPWILALIVFFVLSIVLN-----------LIPLIGGLVLavITPALIAGFLKLADE 71
Cdd:COG5473   18 VRRVTLADPLDWLAAGWRDFRAAPGISLFYGLIFALIGLLLLlvllaaglpplLFPLAAGFLL--VGPFLAVGLYEVSRR 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535  72 IEAGREARVGHLFAPLQDADRRNPLLLLGLLALVASVVLAVVAAAFVGGAVMLDDTSGFGAGMMP-LAGVGFF--GLIVL 148
Cdd:COG5473   96 LERGEPPSLGDALAVWRRNLGQLALLGLVLLLLFLAWLRAAALLFALFFGGGPPSLSGFLAAVFLtPEGLTFLavGTLVG 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493798535 149 FLLYLAVFAALAFSIPLVYFRGVPIGEAVLASIQGTITNLAPLIIFSVIYFVLAMIAMIPLGLGFLILGPVVLGAVYGAY 228
Cdd:COG5473  176 AVFAALVFAISVVSIPLLLDRDVDAVTAMITSVRAVLANPVPMLLWAALIAALTLLGMLPLFLGLIVVLPVLGHATWHAY 255

                 ....*...
gi 493798535 229 REIFPEPE 236
Cdd:COG5473  256 RDLVAPEA 263
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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