NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|493893808|ref|WP_006839765|]
View 

bifunctional tetrahydrofolate synthase/dihydrofolate synthase [Corynebacterium lipophiloflavum]

Protein Classification

bifunctional folylpolyglutamate synthase/dihydrofolate synthase( domain architecture ID 11416298)

bifunctional folylpolyglutamate synthase (FGPS)/dihydrofolate synthase (DHFS) functions in two distinct reactions of the de novo folate biosynthetic pathway, catalyzing the addition of a glutamate residue to dihydropteroate to form dihydrofolate and the successive additions of L-glutamate to tetrahydrofolate, leading to folylpolyglutamate derivatives

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
FolC COG0285
Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; ...
57-500 4.47e-159

Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; Folylpolyglutamate synthase/Dihydropteroate synthase is part of the Pathway/BioSystem: Folate biosynthesis


:

Pssm-ID: 440054 [Multi-domain]  Cd Length: 423  Bit Score: 458.03  E-value: 4.47e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  57 AELRRVEAELLTRWgETEIDPTLDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLI 136
Cdd:COG0285    2 TTYQEALAYLESLH-PFGIKLGLERIRALLERLGNPQRKLPVIHVAGTNGKGSTAAMLESILRAAGYRVGLYTSPHLVRF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 137 TERIGIDGAPIHPAQFVAIYDQVAPYMELADQHSgqrLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADV 216
Cdd:COG0285   81 NERIRINGEPISDEELVEALEEVEPAVEEVDAGP---PTFFEVTTAAAFLYFAEAPVDVAVLEVGLGGRLDATNVIDPLV 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 217 NVIMPIGLDHTDYLGDTLAQIAGEKAGIITnPDSVTIIADQDPEAMRVVLEAAVDTGSAVARLGIEFTVAEatvaVGGQN 296
Cdd:COG0285  158 SVITSIGLDHTDFLGDTLEEIAREKAGIIK-PGVPVVTGDQQPEALEVIEERAAELGAPLYRAGRDFSVEE----REGAV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 297 LTLKGLGGEYTDIFLPLSGPHQARNAAVALAAVEAFHGASseRPLDADTVRRGFAAVESPGRLERVRATPTTFIDATHNP 376
Cdd:COG0285  233 FSYQGPGGEYEDLPLPLLGAHQAENAALALAALEALRELG--LPISEEAIREGLANARWPGRLEVLSRGPLVILDGAHNP 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 377 HGARALADALANDFDFTRLIGVLGVLGDKDATGILAALEPVFTEVVITQNTSPRAMDAYELAELAREIygDERVHVVTRL 456
Cdd:COG0285  311 AGARALAETLKELFPFRKLHLVFGMLADKDIEGMLAALAPLADEVIVTTPPSPRALDAEELAEAAREL--GLRVEVAPDV 388
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 493893808 457 ADAYELAVELAEDalaevgvqsGSGVVITGSVVTAGEARSMFGK 500
Cdd:COG0285  389 EEALEAALELADP---------DDLILVTGSLYLVGEVRALLGR 423
 
Name Accession Description Interval E-value
FolC COG0285
Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; ...
57-500 4.47e-159

Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; Folylpolyglutamate synthase/Dihydropteroate synthase is part of the Pathway/BioSystem: Folate biosynthesis


Pssm-ID: 440054 [Multi-domain]  Cd Length: 423  Bit Score: 458.03  E-value: 4.47e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  57 AELRRVEAELLTRWgETEIDPTLDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLI 136
Cdd:COG0285    2 TTYQEALAYLESLH-PFGIKLGLERIRALLERLGNPQRKLPVIHVAGTNGKGSTAAMLESILRAAGYRVGLYTSPHLVRF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 137 TERIGIDGAPIHPAQFVAIYDQVAPYMELADQHSgqrLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADV 216
Cdd:COG0285   81 NERIRINGEPISDEELVEALEEVEPAVEEVDAGP---PTFFEVTTAAAFLYFAEAPVDVAVLEVGLGGRLDATNVIDPLV 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 217 NVIMPIGLDHTDYLGDTLAQIAGEKAGIITnPDSVTIIADQDPEAMRVVLEAAVDTGSAVARLGIEFTVAEatvaVGGQN 296
Cdd:COG0285  158 SVITSIGLDHTDFLGDTLEEIAREKAGIIK-PGVPVVTGDQQPEALEVIEERAAELGAPLYRAGRDFSVEE----REGAV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 297 LTLKGLGGEYTDIFLPLSGPHQARNAAVALAAVEAFHGASseRPLDADTVRRGFAAVESPGRLERVRATPTTFIDATHNP 376
Cdd:COG0285  233 FSYQGPGGEYEDLPLPLLGAHQAENAALALAALEALRELG--LPISEEAIREGLANARWPGRLEVLSRGPLVILDGAHNP 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 377 HGARALADALANDFDFTRLIGVLGVLGDKDATGILAALEPVFTEVVITQNTSPRAMDAYELAELAREIygDERVHVVTRL 456
Cdd:COG0285  311 AGARALAETLKELFPFRKLHLVFGMLADKDIEGMLAALAPLADEVIVTTPPSPRALDAEELAEAAREL--GLRVEVAPDV 388
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 493893808 457 ADAYELAVELAEDalaevgvqsGSGVVITGSVVTAGEARSMFGK 500
Cdd:COG0285  389 EEALEAALELADP---------DDLILVTGSLYLVGEVRALLGR 423
folC TIGR01499
folylpolyglutamate synthase/dihydrofolate synthase; This model represents the FolC family of ...
79-498 2.42e-96

folylpolyglutamate synthase/dihydrofolate synthase; This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]


Pssm-ID: 273659 [Multi-domain]  Cd Length: 397  Bit Score: 296.89  E-value: 2.42e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808   79 LDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERIGIDGAPIHPAQFVAIYDQ 158
Cdd:TIGR01499   1 LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  159 VAPymeLADQHSgQRLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADVNVIMPIGLDHTDYLGDTLAQIA 238
Cdd:TIGR01499  81 VRP---ILESLS-QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIEPLVSVITSIGLDHTEILGDTLEEIA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  239 GEKAGIITnPDSVTIIADQDPEAMRVVLEAAVDTGSAVARLGIEFTVAEATvavgGQNLTLKGLGGEYTDIFLPLSGPHQ 318
Cdd:TIGR01499 157 WEKAGIIK-EGVPIVTGEQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETD----ENYLSFSGANLFLEPLALSLLGDHQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  319 ARNAAVALAAVEAFhgASSERPLDADTVRRGFAAVESPGRLERVR-ATPTTFIDATHNPHGARALADALANDFDFTRLIG 397
Cdd:TIGR01499 232 QENAALALAALEVL--GKQNPKLSEEAIRQGLANTIWPGRLEILSeDNPNILLDGAHNPHSAEALAEWFKKRFNGRPITL 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  398 VLGVLGDKDATGILAALEPVFTEVV-ITQNTSPRAMDAYELAELAREiYGDERVhvvtrlaDAYELAVELAEDALAEvgv 476
Cdd:TIGR01499 310 LFGALADKDAAAMLAPLKPVVDKEVfVTPFDYPRADDAADLAAFAEE-TGKSTV-------EDWREALEEALNASAE--- 378
                         410       420
                  ....*....|....*....|..
gi 493893808  477 qsgSGVVITGSVVTAGEARSMF 498
Cdd:TIGR01499 379 ---DDILVTGSLYLVGEVRKLL 397
PRK10846 PRK10846
bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
75-439 2.12e-48

bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional


Pssm-ID: 182774 [Multi-domain]  Cd Length: 416  Bit Score: 172.18  E-value: 2.12e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  75 IDPTLDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERIGIDGAPIHPAQFVA 154
Cdd:PRK10846  28 IDLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTA 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 155 IYdqvapyMELADQHSGQRLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADVNVIMPIGLDHTDYLGDTL 234
Cdd:PRK10846 108 SF------AEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPDR 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 235 AQIAGEKAGI--------ITNPDSVTIIADqdpeamrvvleAAVDTGSAVARLGIEFtvaeaTVAVGGQNLTLKGLGGEY 306
Cdd:PRK10846 182 ESIGREKAGIfraekpavVGEPDMPSTIAD-----------VAQEKGALLQRRGVDW-----NYSVTDHDWAFSDGDGTL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 307 TDifLPLSGPHQARNAAVALAAveafhgASSERPLDADTVRRGFAAVESPGRLERVRATPTTFIDATHNPHGARALADAL 386
Cdd:PRK10846 246 EN--LPLPNVPLPNAATALAAL------RASGLEVSEQAIRDGIASAILPGRFQIVSESPRVILDVAHNPHAAEYLTGRL 317
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 493893808 387 ANDFDFTRLIGVLGVLGDKDATGILAALEPVFTEVVITQNTSPRAMDAYELAE 439
Cdd:PRK10846 318 KALPKNGRVLAVIGMLHDKDIAGTLACLKSVVDDWYCAPLEGPRGATAEQLAE 370
Mur_ligase_C pfam02875
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase ...
356-433 2.81e-12

Mur ligase family, glutamate ligase domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460731 [Multi-domain]  Cd Length: 87  Bit Score: 62.36  E-value: 2.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  356 PGRLERVRA--TPTTFIDATHNPHGARALADALANDFDFtRLIGVLGVLGDKDAT--GILAALEPVFTEVVITQNTSPRA 431
Cdd:pfam02875   2 PGRLEVVGEnnGVLVIDDYAHNPDAMEAALRALRNLFPG-RLILVFGGMGDRDAEfhALLGRLAAALADVVILTGDYPRA 80

                  ..
gi 493893808  432 MD 433
Cdd:pfam02875  81 ED 82
 
Name Accession Description Interval E-value
FolC COG0285
Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; ...
57-500 4.47e-159

Folylpolyglutamate synthase/Dihydropteroate synthase [Coenzyme transport and metabolism]; Folylpolyglutamate synthase/Dihydropteroate synthase is part of the Pathway/BioSystem: Folate biosynthesis


Pssm-ID: 440054 [Multi-domain]  Cd Length: 423  Bit Score: 458.03  E-value: 4.47e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  57 AELRRVEAELLTRWgETEIDPTLDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLI 136
Cdd:COG0285    2 TTYQEALAYLESLH-PFGIKLGLERIRALLERLGNPQRKLPVIHVAGTNGKGSTAAMLESILRAAGYRVGLYTSPHLVRF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 137 TERIGIDGAPIHPAQFVAIYDQVAPYMELADQHSgqrLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADV 216
Cdd:COG0285   81 NERIRINGEPISDEELVEALEEVEPAVEEVDAGP---PTFFEVTTAAAFLYFAEAPVDVAVLEVGLGGRLDATNVIDPLV 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 217 NVIMPIGLDHTDYLGDTLAQIAGEKAGIITnPDSVTIIADQDPEAMRVVLEAAVDTGSAVARLGIEFTVAEatvaVGGQN 296
Cdd:COG0285  158 SVITSIGLDHTDFLGDTLEEIAREKAGIIK-PGVPVVTGDQQPEALEVIEERAAELGAPLYRAGRDFSVEE----REGAV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 297 LTLKGLGGEYTDIFLPLSGPHQARNAAVALAAVEAFHGASseRPLDADTVRRGFAAVESPGRLERVRATPTTFIDATHNP 376
Cdd:COG0285  233 FSYQGPGGEYEDLPLPLLGAHQAENAALALAALEALRELG--LPISEEAIREGLANARWPGRLEVLSRGPLVILDGAHNP 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 377 HGARALADALANDFDFTRLIGVLGVLGDKDATGILAALEPVFTEVVITQNTSPRAMDAYELAELAREIygDERVHVVTRL 456
Cdd:COG0285  311 AGARALAETLKELFPFRKLHLVFGMLADKDIEGMLAALAPLADEVIVTTPPSPRALDAEELAEAAREL--GLRVEVAPDV 388
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....
gi 493893808 457 ADAYELAVELAEDalaevgvqsGSGVVITGSVVTAGEARSMFGK 500
Cdd:COG0285  389 EEALEAALELADP---------DDLILVTGSLYLVGEVRALLGR 423
folC TIGR01499
folylpolyglutamate synthase/dihydrofolate synthase; This model represents the FolC family of ...
79-498 2.42e-96

folylpolyglutamate synthase/dihydrofolate synthase; This model represents the FolC family of folate pathway proteins. Most examples are bifunctional, active as both folylpolyglutamate synthetase (EC 6.3.2.17) and dihydrofolate synthetase (EC 6.3.2.12). The two activities are similar - ATP + glutamate + dihydropteroate or tetrahydrofolyl-[Glu](n) = ADP + orthophosphate + dihydrofolate or tetrahydrofolyl-[Glu](n+1). A mutation study of the FolC gene of E. coli suggests that both activities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid]


Pssm-ID: 273659 [Multi-domain]  Cd Length: 397  Bit Score: 296.89  E-value: 2.42e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808   79 LDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERIGIDGAPIHPAQFVAIYDQ 158
Cdd:TIGR01499   1 LERMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  159 VAPymeLADQHSgQRLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADVNVIMPIGLDHTDYLGDTLAQIA 238
Cdd:TIGR01499  81 VRP---ILESLS-QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVIEPLVSVITSIGLDHTEILGDTLEEIA 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  239 GEKAGIITnPDSVTIIADQDPEAMRVVLEAAVDTGSAVARLGIEFTVAEATvavgGQNLTLKGLGGEYTDIFLPLSGPHQ 318
Cdd:TIGR01499 157 WEKAGIIK-EGVPIVTGEQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETD----ENYLSFSGANLFLEPLALSLLGDHQ 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  319 ARNAAVALAAVEAFhgASSERPLDADTVRRGFAAVESPGRLERVR-ATPTTFIDATHNPHGARALADALANDFDFTRLIG 397
Cdd:TIGR01499 232 QENAALALAALEVL--GKQNPKLSEEAIRQGLANTIWPGRLEILSeDNPNILLDGAHNPHSAEALAEWFKKRFNGRPITL 309
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  398 VLGVLGDKDATGILAALEPVFTEVV-ITQNTSPRAMDAYELAELAREiYGDERVhvvtrlaDAYELAVELAEDALAEvgv 476
Cdd:TIGR01499 310 LFGALADKDAAAMLAPLKPVVDKEVfVTPFDYPRADDAADLAAFAEE-TGKSTV-------EDWREALEEALNASAE--- 378
                         410       420
                  ....*....|....*....|..
gi 493893808  477 qsgSGVVITGSVVTAGEARSMF 498
Cdd:TIGR01499 379 ---DDILVTGSLYLVGEVRKLL 397
PRK10846 PRK10846
bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
75-439 2.12e-48

bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional


Pssm-ID: 182774 [Multi-domain]  Cd Length: 416  Bit Score: 172.18  E-value: 2.12e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  75 IDPTLDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERIGIDGAPIHPAQFVA 154
Cdd:PRK10846  28 IDLGLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTA 107
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 155 IYdqvapyMELADQHSGQRLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADVNVIMPIGLDHTDYLGDTL 234
Cdd:PRK10846 108 SF------AEIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPDR 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 235 AQIAGEKAGI--------ITNPDSVTIIADqdpeamrvvleAAVDTGSAVARLGIEFtvaeaTVAVGGQNLTLKGLGGEY 306
Cdd:PRK10846 182 ESIGREKAGIfraekpavVGEPDMPSTIAD-----------VAQEKGALLQRRGVDW-----NYSVTDHDWAFSDGDGTL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 307 TDifLPLSGPHQARNAAVALAAveafhgASSERPLDADTVRRGFAAVESPGRLERVRATPTTFIDATHNPHGARALADAL 386
Cdd:PRK10846 246 EN--LPLPNVPLPNAATALAAL------RASGLEVSEQAIRDGIASAILPGRFQIVSESPRVILDVAHNPHAAEYLTGRL 317
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 493893808 387 ANDFDFTRLIGVLGVLGDKDATGILAALEPVFTEVVITQNTSPRAMDAYELAE 439
Cdd:PRK10846 318 KALPKNGRVLAVIGMLHDKDIAGTLACLKSVVDDWYCAPLEGPRGATAEQLAE 370
PLN02913 PLN02913
dihydrofolate synthetase
79-487 4.09e-39

dihydrofolate synthetase


Pssm-ID: 178501 [Multi-domain]  Cd Length: 510  Bit Score: 148.81  E-value: 4.09e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  79 LDRVRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERI--GIDGAPIHPAQFVAIY 156
Cdd:PLN02913  58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERIsvGKLGKPVSTNTLNDLF 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 157 DQVAPYMELADQHSGQRLSYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEAD---VNVIMPIGLDHTDYLGDT 233
Cdd:PLN02913 138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSglaASVITTIGEEHLAALGGS 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 234 LAQIAGEKAGIITN-----------PDSVTIIADQdPEAMRVVLEAAVDTGSAVARLGIE------FTVAEATVAVGGQN 296
Cdd:PLN02913 218 LESIALAKSGIIKQgrpvvlggpflPHIESILRDK-ASSMNSPVVSASDPGVRSSIKGIItdngkpCQSCDIVIRVEKDD 296
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 297 ltlkGLGGEYTDIFLPLSGPHQARNAAVALAAVEAFHGASSERPlDAdTVRRGFAAVESPGRLERVRAT---------PT 367
Cdd:PLN02913 297 ----PLFIELSDVNLRMLGSHQLQNAVTAACAALCLRDQGWRIS-DA-SIRAGLENTNLLGRSQFLTSKeaevlglpgAT 370
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 368 TFIDATHNPHGARALADALANDFDFTRLIGVLGVLGDKD----ATGILAALEP---VFTEVVITQNTSpRAMDAYELA-- 438
Cdd:PLN02913 371 VLLDGAHTKESAKALVDTIKTAFPEARLALVVAMASDKDhlafASEFLSGLKPeavFLTEADIAGGKS-RSTSASALKea 449
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 493893808 439 ------ELAREIYGDERVHVVTRLADAYELAVELAedalaevGVQSGSGVVITGS 487
Cdd:PLN02913 450 wikaapELGIETLLAENNSLLKSLVDASAILRKAR-------TLDPSSVVCVTGS 497
PLN02881 PLN02881
tetrahydrofolylpolyglutamate synthase
80-318 1.08e-38

tetrahydrofolylpolyglutamate synthase


Pssm-ID: 215476  Cd Length: 530  Bit Score: 147.88  E-value: 1.08e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  80 DRVRLLMDYLG-----EPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERIGIDGAPIHPAQFVA 154
Cdd:PLN02881  40 DQFDLLFDYLKileleEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLR 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 155 ----IYDQVApymeladQHSGQRL---SYFEALVCLAYAAFADAPVEVAVVEVGMGGRWDATNVVEADVNV-IMPIGLDH 226
Cdd:PLN02881 120 yfwwCWDRLK-------EKTTEDLpmpAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCgITSLGYDH 192
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 227 TDYLGDTLAQIAGEKAGIItNPDSVTIIADQDPEAMRVVLEAAvdtgsavARLGIEFTVAEAtvavggqnLTLKGLGGey 306
Cdd:PLN02881 193 MEILGDTLGKIAGEKAGIF-KPGVPAFTVPQPDEAMRVLEERA-------SELGVPLQVVEP--------LDSYGLSG-- 254
                        250
                 ....*....|..
gi 493893808 307 tdIFLPLSGPHQ 318
Cdd:PLN02881 255 --LKLGLAGEHQ 264
MurE COG0769
UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; ...
90-486 1.77e-12

UDP-N-acetylmuramyl tripeptide synthase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramyl tripeptide synthase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440532 [Multi-domain]  Cd Length: 459  Bit Score: 69.34  E-value: 1.77e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  90 GEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGrttsphlqLI-TERIGIDGAPIHP--------------AQFVA 154
Cdd:COG0769   74 GHPSQKLKLIGVTGTNGKTTTTYLLAQILRALGKKTG--------LIgTVGNGIGGELIPSslttpealdlqrllAEMVD 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 155 I-YDQVApyME-----LaDQHsgqRLSYfealVCLAYAAFadapvevavvevgmggrwdaTNvveadvnvimpIGLDHTD 228
Cdd:COG0769  146 AgVTHVV--MEvsshaL-DQG---RVDG----VRFDVAVF--------------------TN-----------LTRDHLD 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 229 YLGdTLAQIAGEKAGIITN--PDSVTII-ADqDPEAMRVVLEAAVdtgsAVARLGIE----FTVAEATVAVGGQNLTLKG 301
Cdd:COG0769  185 YHG-TMEAYFAAKARLFDQlgPGGAAVInAD-DPYGRRLAAAAPA----RVITYGLKadadLRATDIELSADGTRFTLVT 258
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 302 LGGEYtDIFLPLSGphqarnaavalaaveAFH--------GASSERPLDADTVRRGFAAVES-PGRLERVRAT--PTTFI 370
Cdd:COG0769  259 PGGEV-EVRLPLIG---------------RFNvynalaaiAAALALGIDLEEILAALEKLKGvPGRMERVDGGqgPTVIV 322
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 371 DATHNPhgaRALADAL--ANDFDFTRLIGVLGVLGDKDAT------GILAALepvFTEVVITqNTSPRAMDAYE-LAELA 441
Cdd:COG0769  323 DYAHTP---DALENVLeaLRPHTKGRLIVVFGCGGDRDRGkrplmgEIAARL---ADVVIVT-SDNPRSEDPAAiIADIL 395
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*
gi 493893808 442 REIYGDERVHVVTRLADAYELAVELAedalaevgvQSGSGVVITG 486
Cdd:COG0769  396 AGIPGAGKVLVIPDRAEAIRYAIALA---------KPGDVVLIAG 431
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
84-467 2.63e-12

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 69.35  E-value: 2.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  84 LLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRttsphlqliterIGIDGApIHPAQFVAIyDQVAPym 163
Cdd:PRK11929 100 LAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGS------------IGTLGA-RLDGRLIPG-SLTTP-- 163
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 164 elaDQHSGQRLsyFEALVclayAAFADAPVEVAVVEVGMGGRWDAtnvVEADVNVIMPIGLDHTDYLGdTLAQIAGEKAG 243
Cdd:PRK11929 164 ---DAIILHRI--LARMR----AAGADAVAMEASSHGLEQGRLDG---LRIAVAGFTNLTRDHLDYHG-TMQDYEEAKAA 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 244 IITN--PDSVTIIADQDPEAMRV--VLEAAVDTGSAVARLGIEFTVAEATVAVGGQNLTLKGLGGEYTdIFLPLSGPHQA 319
Cdd:PRK11929 231 LFSKlpGLGAAVINADDPAAARLlaALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPDGSYQ-LVTRLLGRFNV 309
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 320 RNAAVALaaveafhGASSERPLDADTVRRGFAAVES-PGRLERVRAT-----PTTFIDATHNPHgarALADALAN----- 388
Cdd:PRK11929 310 SNLLLVA-------AALKKLGLPLAQIARALAAVSPvPGRMERVGPTagaqgPLVVVDYAHTPD---ALAKALTAlrpva 379
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 389 DFDFTRLIGVLGVLGDKDATG--ILAALEPVFTEVVITQNTSPRAMDAYE-LAELAREIYGDERVHVVTRLADAYELAVE 465
Cdd:PRK11929 380 QARNGRLVCVFGCGGDRDKGKrpEMGRIAAELADRVVVTSDNPRSEAPEAiIDQILAGIPAGARVFVISDRAEAIRQAIW 459

                 ..
gi 493893808 466 LA 467
Cdd:PRK11929 460 MA 461
Mur_ligase_C pfam02875
Mur ligase family, glutamate ligase domain; This family contains a number of related ligase ...
356-433 2.81e-12

Mur ligase family, glutamate ligase domain; This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesized by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate.


Pssm-ID: 460731 [Multi-domain]  Cd Length: 87  Bit Score: 62.36  E-value: 2.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  356 PGRLERVRA--TPTTFIDATHNPHGARALADALANDFDFtRLIGVLGVLGDKDAT--GILAALEPVFTEVVITQNTSPRA 431
Cdd:pfam02875   2 PGRLEVVGEnnGVLVIDDYAHNPDAMEAALRALRNLFPG-RLILVFGGMGDRDAEfhALLGRLAAALADVVILTGDYPRA 80

                  ..
gi 493893808  432 MD 433
Cdd:pfam02875  81 ED 82
murE TIGR01085
UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, ...
88-486 6.36e-10

UDP-N-acetylmuramyl-tripeptide synthetase; Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273435 [Multi-domain]  Cd Length: 464  Bit Score: 61.18  E-value: 6.36e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808   88 YLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPHLQLITERIGIDGAPIHPAQFVAIYDQVApymELAD 167
Cdd:TIGR01085  77 FYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLA---EMVE 153
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  168 QHsgqrlsyfealvcLAYAAFadapvevAVVEVGMG-GRWDATNVveaDVNVIMPIGLDHTDYLGdTLAQIAGEKAGIIT 246
Cdd:TIGR01085 154 AG-------------AQYAVM-------EVSSHALAqGRVRGVRF---DAAVFTNLSRDHLDFHG-TMENYFAAKASLFT 209
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  247 N---PDSVTIIADqDPEAMRVVLEAAVDTGSAVARLGIEFTVA-----EATVAVGGQNLTLKGLGGEYtDIFLPLSGPHQ 318
Cdd:TIGR01085 210 ElglKRFAVINLD-DEYGAQFVKRLPKDITVSAITQPADGRAQdikitDSGYSFEGQQFTFETPAGEG-HLHTPLIGRFN 287
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  319 ARNAAVALAAVEAFHGasserpLDADTVRRGFAAVES-PGRLERV--RATPTTFIDATHNPHgarALADALANDFDFT-- 393
Cdd:TIGR01085 288 VYNLLAALATLLHLGG------IDLEDIVAALEKFRGvPGRMELVdgGQKFLVIVDYAHTPD---ALEKALRTLRKHKdg 358
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  394 RLIGVLGVLGDKDAT--GILAALEPVFTEVVITQNTSPRAMDAYE-LAELAREIYGDERVHVVTRLADAYELAVELAEDa 470
Cdd:TIGR01085 359 RLIVVFGCGGDRDRGkrPLMGAIAEQLADLVILTSDNPRGEDPEQiIADILAGISEKEKVVIIADRRQAIRYAISNAKA- 437
                         410
                  ....*....|....*.
gi 493893808  471 laevgvqsGSGVVITG 486
Cdd:TIGR01085 438 --------GDVVLIAG 445
Mur_ligase_M pfam08245
Mur ligase middle domain;
101-318 3.00e-07

Mur ligase middle domain;


Pssm-ID: 462409 [Multi-domain]  Cd Length: 199  Bit Score: 50.77  E-value: 3.00e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  101 VAGTNGKTSTTRMIDSLLRAFGHRVG----------RTTSPHLQLiterigidgapihPAQFVAIYDQVAPY--MELADQ 168
Cdd:pfam08245   1 VTGTNGKTTTTELIAAILSLAGGVIGtigtyigksgNTTNNAIGL-------------PLTLAEMVEAGAEYavLEVSSH 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  169 HSGQRLSYFEalvclayaafadapvevavvevgmggrwdatnvVEADVNVIMPIGLDHTDYLGdTLAQIAGEKAGIITN- 247
Cdd:pfam08245  68 GLGEGRLSGL---------------------------------LKPDIAVFTNISPDHLDFHG-TMENYAKAKAELFEGl 113
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 493893808  248 -PDSVTII-ADqDPEAMRVVLEAAVdTGSAVARLGIE----FTVAEATVAVGGQNLTLKGLGGEYTDIFLPLSGPHQ 318
Cdd:pfam08245 114 pEDGIAVInAD-DPYGAFLIAKLKK-AGVRVITYGIEgeadLRAANIELSSDGTSFDLFTVPGGELEIEIPLLGRHN 188
murE PRK00139
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
88-408 5.25e-07

UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional


Pssm-ID: 234660 [Multi-domain]  Cd Length: 460  Bit Score: 52.06  E-value: 5.25e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  88 YLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGrttsphlqLI-TERIGIDGAPIHP--------------AQF 152
Cdd:PRK00139  87 FYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTA--------LIgTLGNGIGGELIPSglttpdaldlqrllAEL 158
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 153 VaiyDQVAPY--MELA----DQHsgqRLSYfealVCLAYAAFadapvevavvevgmggrwdaTNvveadvnvimpIGLDH 226
Cdd:PRK00139 159 V---DAGVTYaaMEVSshalDQG---RVDG----LKFDVAVF--------------------TN-----------LSRDH 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 227 TDYLGdTLAQIAGEKAGIITNPDSVTIIADQDPEAMRVvleAAVDTGSAVARLGIEFTVAEATVAVGGQNLTLkglggeY 306
Cdd:PRK00139 198 LDYHG-TMEDYLAAKARLFSELGLAAVINADDEVGRRL---LALPDAYAVSMAGADLRATDVEYTDSGQTFTL------V 267
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 307 TDIFLPLSGphqarnaavalaaveAFH--------GASSERPLDADTVRRGFAAVES-PGRLERVRAT--PTTFIDATHN 375
Cdd:PRK00139 268 TEVESPLIG---------------RFNvsnllaalAALLALGVPLEDALAALAKLQGvPGRMERVDAGqgPLVIVDYAHT 332
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 493893808 376 PhgaralaDALANDFDFTR------LIGVLGVLGDKDAT 408
Cdd:PRK00139 333 P-------DALEKVLEALRphakgrLICVFGCGGDRDKG 364
PRK14016 PRK14016
cyanophycin synthetase; Provisional
101-130 3.97e-06

cyanophycin synthetase; Provisional


Pssm-ID: 237586 [Multi-domain]  Cd Length: 727  Bit Score: 49.38  E-value: 3.97e-06
                         10        20        30
                 ....*....|....*....|....*....|
gi 493893808 101 VAGTNGKTSTTRMIDSLLRAFGHRVGRTTS 130
Cdd:PRK14016 485 VTGTNGKTTTTRLIAHILKLSGKRVGMTTT 514
murC TIGR01082
UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial ...
82-122 3.68e-04

UDP-N-acetylmuramate--L-alanine ligase; This model describes the MurC protein in bacterial peptidoglycan (murein) biosynthesis. In a few species (Mycobacterium leprae, the Chlamydia), the amino acid may be L-serine or glycine instead of L-alanine. A related protein, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by model TIGR01081. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]


Pssm-ID: 273433 [Multi-domain]  Cd Length: 448  Bit Score: 43.06  E-value: 3.68e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 493893808   82 VRLLMDYLGEPQKSFRTIHVAGTNGKTSTTRMIDSLLRAFG 122
Cdd:TIGR01082  85 VIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG 125
PRK11929 PRK11929
bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE ...
93-404 2.67e-03

bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF;


Pssm-ID: 237025 [Multi-domain]  Cd Length: 958  Bit Score: 40.46  E-value: 2.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808  93 QKSFRTIHVAGTNGKTSTTRMIDSLLRAFGHRVGRTTSPhlQLITERIGIdgaPIHPAQFVAIYDqvAPYMELADQHSGQ 172
Cdd:PRK11929 600 RFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATE--GNFNNEIGV---PLTLLRLRAQHR--AAVFELGMNHPGE 672
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 173 rlsyfealvcLAYAAfadapvevavvevgmggrwdatNVVEADVNVIMPIGLDHTDYLGDtLAQIAGEKAGIITN--PDS 250
Cdd:PRK11929 673 ----------IAYLA----------------------AIAAPTVALVTNAQREHQEFMHS-VEAVARAKGEIIAAlpEDG 719
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 251 VTIIADQDPeamRVVLEAAVDTGSAVARLGI--------EFTVAEATVAVGGQNLTLKGLGGEYTDIFLPLSGPHQARNA 322
Cdd:PRK11929 720 VAVVNGDDP---YTAIWAKLAGARRVLRFGLqpgadvyaEKIAKDISVGEAGGTRCQVVTPAGSAEVYLPLIGEHNLRNA 796
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493893808 323 AVALAAVEAFhGASserpldADTVRRGFAAVESP-GRLERVR-ATPTTFIDATH--NPHGARALADALAnDFDFTRLIGV 398
Cdd:PRK11929 797 LAAIACALAA-GAS------LKQIRAGLERFQPVaGRMQRRRlSCGTRIIDDTYnaNPDSMRAAIDVLA-ELPNGPRALV 868

                 ....*.
gi 493893808 399 LGVLGD 404
Cdd:PRK11929 869 LGDMLE 874
MurD COG0771
UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; ...
103-126 4.23e-03

UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; UDP-N-acetylmuramoylalanine-D-glutamate ligase is part of the Pathway/BioSystem: Mureine biosynthesis


Pssm-ID: 440534 [Multi-domain]  Cd Length: 445  Bit Score: 39.68  E-value: 4.23e-03
                         10        20
                 ....*....|....*....|....
gi 493893808 103 GTNGKTSTTRMIDSLLRAFGHRVG 126
Cdd:COG0771  112 GTNGKTTTTTLIGHILKAAGLRVA 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH