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Conserved domains on  [gi|493981873|ref|WP_006924777|]
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tyrosine-type recombinase/integrase [Candidatus Bartonella washoeensis]

Protein Classification

tyrosine-type recombinase/integrase( domain architecture ID 11471964)

tyrosine-type recombinase/integrase cleaves DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment.

Gene Ontology:  GO:0009009|GO:0006310
PubMed:  10047575|9278480

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
XerD COG4974
Site-specific recombinase XerD [Replication, recombination and repair];
70-293 4.19e-24

Site-specific recombinase XerD [Replication, recombination and repair];


:

Pssm-ID: 443999 [Multi-domain]  Cd Length: 291  Bit Score: 100.07  E-value: 4.19e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  70 SFNWLLHQYLQSMQWH-NQSESTKKVKYRILNNVSKHI---GDRAYKSIERHHILDAVDRRRD---TPAAAKHFLTALNG 142
Cdd:COG4974    2 TLADLLEAFLEELKREkGLSPNTIKAYRRDLRRFLRFLeelGKIPLAEITPEDIRAYLNYLRErglSPSTINRYLAALRS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 143 LFNWAVDNALLNRNPAFNIKAPKslNSEGLLPWLEED-----IDKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKD 217
Cdd:COG4974   82 FFRYAVREGLLEDNPAAKVKLPK--KPRKLPRVLTEEeiealLEALDTETPEGLRDRALLLLLYATGLRVSELLGLKWSD 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 218 V--KDNIIHLKTEKSqfKTDVFLPILPELEETLK-----IGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKK--S 288
Cdd:COG4974  160 IdlDRGTIRVRRGKG--GKERTVPLSPEALEALReyleeRRPRDSDYLFPTRRGRPLSRRAIRKILKRLAKRAGIPKrvT 237

                 ....*
gi 493981873 289 AHGLR 293
Cdd:COG4974  238 PHSLR 242
 
Name Accession Description Interval E-value
XerD COG4974
Site-specific recombinase XerD [Replication, recombination and repair];
70-293 4.19e-24

Site-specific recombinase XerD [Replication, recombination and repair];


Pssm-ID: 443999 [Multi-domain]  Cd Length: 291  Bit Score: 100.07  E-value: 4.19e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  70 SFNWLLHQYLQSMQWH-NQSESTKKVKYRILNNVSKHI---GDRAYKSIERHHILDAVDRRRD---TPAAAKHFLTALNG 142
Cdd:COG4974    2 TLADLLEAFLEELKREkGLSPNTIKAYRRDLRRFLRFLeelGKIPLAEITPEDIRAYLNYLRErglSPSTINRYLAALRS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 143 LFNWAVDNALLNRNPAFNIKAPKslNSEGLLPWLEED-----IDKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKD 217
Cdd:COG4974   82 FFRYAVREGLLEDNPAAKVKLPK--KPRKLPRVLTEEeiealLEALDTETPEGLRDRALLLLLYATGLRVSELLGLKWSD 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 218 V--KDNIIHLKTEKSqfKTDVFLPILPELEETLK-----IGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKK--S 288
Cdd:COG4974  160 IdlDRGTIRVRRGKG--GKERTVPLSPEALEALReyleeRRPRDSDYLFPTRRGRPLSRRAIRKILKRLAKRAGIPKrvT 237

                 ....*
gi 493981873 289 AHGLR 293
Cdd:COG4974  238 PHSLR 242
INT_Lambda_C cd00800
C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase; ...
192-334 6.80e-13

C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase; Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.


Pssm-ID: 271181 [Multi-domain]  Cd Length: 161  Bit Score: 65.83  E-value: 6.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 192 HERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKtdVFLPILPELEETL----KIGPIGNETFICGKGGNKL 267
Cdd:cd00800   13 LLRLAMELALLTGQRQGDLLRLKWSDITDGGLLVEQSKTGKK--LLIPWTPSLRALVdrirALPRKRSEYLINSRKGGPL 90
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493981873 268 VKESFGNLFREACNAAGIKKSA-----HGLRKLAATRAANAGATvSQMKALFGWTEDKMASLYTKTADRKRL 334
Cdd:cd00800   91 SYDTLKSAWRRARKAAGLKGETegftfHDLRAKAATDYAEQGGS-TDAQALLGHKSDAMTERYTRKRGQKWV 161
Phage_integrase pfam00589
Phage integrase family; Members of this family cleave DNA substrates by a series of staggered ...
175-330 5.25e-07

Phage integrase family; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.


Pssm-ID: 395471 [Multi-domain]  Cd Length: 169  Bit Score: 48.86  E-value: 5.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  175 WLEED----IDKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDV--KDNIIHLKTEKSQFKTDVFLP--ILPELEE 246
Cdd:pfam00589   1 RLTEDeverLLDAAETGPLSIRDKALLELLYATGLRISELCSLRWSDIdfENGVIRVHRGKGNKERTVPLSdaALELLKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  247 TLKIGPI---GNETFICGKGGNKLVKESFGNLFREACNAAGIKK--SAHGLRKLAATRAANAGATVSQMKALFGWTEDKM 321
Cdd:pfam00589  81 WLSKRLLeapKSDYLFASKRGKPLSRQTVRKIFKRAGKEAGLELplHPHMLRHSFATHLLEAGVDLRVVQKLLGHSSIST 160

                  ....*....
gi 493981873  322 ASLYTKTAD 330
Cdd:pfam00589 161 TQIYTHVAD 169
 
Name Accession Description Interval E-value
XerD COG4974
Site-specific recombinase XerD [Replication, recombination and repair];
70-293 4.19e-24

Site-specific recombinase XerD [Replication, recombination and repair];


Pssm-ID: 443999 [Multi-domain]  Cd Length: 291  Bit Score: 100.07  E-value: 4.19e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  70 SFNWLLHQYLQSMQWH-NQSESTKKVKYRILNNVSKHI---GDRAYKSIERHHILDAVDRRRD---TPAAAKHFLTALNG 142
Cdd:COG4974    2 TLADLLEAFLEELKREkGLSPNTIKAYRRDLRRFLRFLeelGKIPLAEITPEDIRAYLNYLRErglSPSTINRYLAALRS 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 143 LFNWAVDNALLNRNPAFNIKAPKslNSEGLLPWLEED-----IDKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKD 217
Cdd:COG4974   82 FFRYAVREGLLEDNPAAKVKLPK--KPRKLPRVLTEEeiealLEALDTETPEGLRDRALLLLLYATGLRVSELLGLKWSD 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 218 V--KDNIIHLKTEKSqfKTDVFLPILPELEETLK-----IGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKK--S 288
Cdd:COG4974  160 IdlDRGTIRVRRGKG--GKERTVPLSPEALEALReyleeRRPRDSDYLFPTRRGRPLSRRAIRKILKRLAKRAGIPKrvT 237

                 ....*
gi 493981873 289 AHGLR 293
Cdd:COG4974  238 PHSLR 242
XerC COG4973
Site-specific recombinase XerC [Replication, recombination and repair];
70-293 3.84e-20

Site-specific recombinase XerC [Replication, recombination and repair];


Pssm-ID: 443998 [Multi-domain]  Cd Length: 287  Bit Score: 88.87  E-value: 3.84e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  70 SFNWLLHQYLQSMQWHNQSESTKKVKYRILNNVSKHIGD--RAYKSIERHHILDAVDRRRDT---PAAAKHFLTALNGLF 144
Cdd:COG4973    3 TLAEALEAYLEHLRERRLSPKTLEAYRRDLRRLIPLLGDadLPLEELTPADVRRFLARLHRRglsPRTLNRRLSALRSFF 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 145 NWAVDNALLNRNPAFNIKAPKSlnsEGLLP--WLEEDIDKYYHRWSHGTHERVW---IDVLLYTGLRRGDAVRIGWKDV- 218
Cdd:COG4973   83 NWAVREGLLEANPAAGVKAPKA---PRKLPraLTVDELAQLLDALADDPLAVRDraiVELLYSTGLRLGELVGLDWEDVd 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 219 -KDNIIHL--KTEKSQfktdvFLPILPELEETLK--------IGPIGNETFICGKGGNKLVKESFGNLFREACNAAGIKK 287
Cdd:COG4973  160 lDAGEVRVrgKTGKSR-----TVPLGPKALAALRewlavrpeLAAPDEGALFPSRRGTRLSPRNVQKRLRRLAKKAGLPK 234

                 ....*...
gi 493981873 288 --SAHGLR 293
Cdd:COG4973  235 hvHPHDLR 242
INT_Lambda_C cd00800
C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase; ...
192-334 6.80e-13

C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase; Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.


Pssm-ID: 271181 [Multi-domain]  Cd Length: 161  Bit Score: 65.83  E-value: 6.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 192 HERVWIDVLLYTGLRRGDAVRIGWKDVKDNIIHLKTEKSQFKtdVFLPILPELEETL----KIGPIGNETFICGKGGNKL 267
Cdd:cd00800   13 LLRLAMELALLTGQRQGDLLRLKWSDITDGGLLVEQSKTGKK--LLIPWTPSLRALVdrirALPRKRSEYLINSRKGGPL 90
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 493981873 268 VKESFGNLFREACNAAGIKKSA-----HGLRKLAATRAANAGATvSQMKALFGWTEDKMASLYTKTADRKRL 334
Cdd:cd00800   91 SYDTLKSAWRRARKAAGLKGETegftfHDLRAKAATDYAEQGGS-TDAQALLGHKSDAMTERYTRKRGQKWV 161
FimB COG0582
Integrase/recombinase, includes phage integrase [Replication, recombination and repair, ...
48-293 1.17e-11

Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons];


Pssm-ID: 440347 [Multi-domain]  Cd Length: 391  Bit Score: 65.06  E-value: 1.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  48 LAIKQAQNGTSKKIKQTRLIEGSFNWLLHQYLQSMQwHNQSEST-KKVKYRILNNVSKHIGDRAYKSIERHHILDAVDR- 125
Cdd:COG0582   76 LGIDPSPARKAAKAAAAAAAANTFEEVAEEWLEEKK-PEWKEKTaAQVRRTLEKHIFPVLGDRPIAEITPPDLLAVLRPi 154
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 126 -RRDTPAAAKHFLTALNGLFNWAVDNALLNRNPAFNIK-APKSLNSEGLLPWLEEDIDKYYHRWSHGTHERVW---IDVL 200
Cdd:COG0582  155 eARGAPETARRVRQRLRQVFRYAVARGLIERNPAADLKgALPKPKVKHHPALTPEELPELLRALDAYRGSPVTrlaLRLL 234
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 201 LYTGLRRGDAVRIGWKDV--KDNIIHLKTEKSQFKTDVFLPILPELEETLK-IGPIGNET---FICGKGGNKLVKEsfgN 274
Cdd:COG0582  235 LLTGVRPGELRGARWSEIdlEAALWTIPAERMKTRRPHIVPLSRQALEILKeLKPLTGDSeyvFPSRRGPKKPMSE---N 311
                        250       260
                 ....*....|....*....|
gi 493981873 275 LFREACNAAGIKK-SAHGLR 293
Cdd:COG0582  312 TLNKALRRMGYGRfTPHGFR 331
Phage_integrase pfam00589
Phage integrase family; Members of this family cleave DNA substrates by a series of staggered ...
175-330 5.25e-07

Phage integrase family; Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.


Pssm-ID: 395471 [Multi-domain]  Cd Length: 169  Bit Score: 48.86  E-value: 5.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  175 WLEED----IDKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDV--KDNIIHLKTEKSQFKTDVFLP--ILPELEE 246
Cdd:pfam00589   1 RLTEDeverLLDAAETGPLSIRDKALLELLYATGLRISELCSLRWSDIdfENGVIRVHRGKGNKERTVPLSdaALELLKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873  247 TLKIGPI---GNETFICGKGGNKLVKESFGNLFREACNAAGIKK--SAHGLRKLAATRAANAGATVSQMKALFGWTEDKM 321
Cdd:pfam00589  81 WLSKRLLeapKSDYLFASKRGKPLSRQTVRKIFKRAGKEAGLELplHPHMLRHSFATHLLEAGVDLRVVQKLLGHSSIST 160

                  ....*....
gi 493981873  322 ASLYTKTAD 330
Cdd:pfam00589 161 TQIYTHVAD 169
DNA_BRE_C cd00397
DNA breaking-rejoining enzymes, C-terminal catalytic domain; The DNA breaking-rejoining enzyme ...
180-326 2.15e-06

DNA breaking-rejoining enzymes, C-terminal catalytic domain; The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.


Pssm-ID: 271175 [Multi-domain]  Cd Length: 167  Bit Score: 47.09  E-value: 2.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 180 IDKYYHRWSHGTHERVWIDVLLYTGLRRGDAVRIGWKDVKD--NIIHLKTEKSQFKTDVFLPILPELEETL--------- 248
Cdd:cd00397    6 LDAIDEDKKIDLRDRAILLLLLETGLRISELLALKVKDIDLdnGTIRVRGKKTKGGKERTVPLPKELAEELkeylkerrd 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 249 KIGPIGNETFICGKGGNKL----VKESFGNLFREACNAAGIKKSAHGLRKLAATRAANAGATVSQMKALFGWTEDKMASL 324
Cdd:cd00397   86 KRGPLLKSLYLNKLFGTKLgerlSRRTLRRIFKKAGIEAGRKITPHSLRHTFATNLLENGVDIKVVQKLLGHSSISTTQR 165

                 ..
gi 493981873 325 YT 326
Cdd:cd00397  166 YL 167
INT_Rci_Hp1_C cd00796
Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal ...
200-293 5.05e-04

Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain; Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.


Pssm-ID: 271177 [Multi-domain]  Cd Length: 162  Bit Score: 40.00  E-value: 5.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 200 LLYTGLRRGDAVRIGWKDVKDNI--IHLKTEKSqfKTDVFLPILPELEETLK--IGPIGNETFICGKGGNKLVKESFGNL 275
Cdd:cd00796   32 ALYTGARRGEILSLRWDDIDLEVglIVLPETKN--GKPRTVPLSDEAIAILKelKRKRGKDGFFVDGRFFGIPIASLRRA 109
                         90
                 ....*....|....*....
gi 493981873 276 FREACNAAGIKK-SAHGLR 293
Cdd:cd00796  110 FKKARKRAGLEDlRFHDLR 128
INTN1_C_like cd01185
Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal ...
202-287 1.38e-03

Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain; IntN1 is a tyrosine recombinase for the integration and excision of Bacteroides mobilizable transposon NBU1 from the host chromosome. IntN1 does not require strict homology between the recombining sites seen with other tyrosine recombinases. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.


Pssm-ID: 271185 [Multi-domain]  Cd Length: 161  Bit Score: 38.78  E-value: 1.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 493981873 202 YTGLRRGDAVRIGWKDVKD----NIIHLKTEKSqfKTDVFLPILPELEETLkigPIGNETFICGKGGNKLVKESFGNLFR 277
Cdd:cd01185   29 YTGLRFSDLKNLTWKNIVEasgrTWIRYRRKKT--GKPVTVPLLPVAREIL---EKYKDDRSEGKLFPVLSNQKINRYLK 103
                         90
                 ....*....|
gi 493981873 278 EACNAAGIKK 287
Cdd:cd01185  104 EIAKIAGIDK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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