NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|494040497|ref|WP_006982622|]
View 

Gfo/Idh/MocA family protein [Chthoniobacter flavus]

Protein Classification

Gfo/Idh/MocA family protein( domain architecture ID 11430574)

Gfo/Idh/MocA family protein belonging to the NAD(P)(+)-binding Rossmann-fold superfamily, may function as an oxidoreductase that catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
MviM COG0673
Predicted dehydrogenase [General function prediction only];
16-355 3.64e-44

Predicted dehydrogenase [General function prediction only];


:

Pssm-ID: 440437 [Multi-domain]  Cd Length: 295  Bit Score: 153.93  E-value: 3.64e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  16 HMGD-LLRRVHEHPQAEIVGICDEQLGRMQNAIGAFGIpdeRVFTDYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDV 94
Cdd:COG0673   13 GIGRaHAPALAALPGVELVAVADRDPERAEAFAEEYGV---RVYTDYEELLADPDIDAVVIATPNHLHAELAIAALEAGK 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  95 NILVEKPFAGSLTEADEMVAVQKAKGKLLAINWPTRWSACSITAKRLIDEGVIGEVLNVHHYGGNRGPlfhradkvvcep 174
Cdd:COG0673   90 HVLCEKPLALTLEEARELVAAAEEAGVVLMVGFNRRFDPAVRAARELIDSGAIGEIRSVRARFGHPRP------------ 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497 175 tpeEKRASWFYKKDR-GGGSLLDYAGYGATLGTWFqGGRKPIEVTCTMDT--PEGLEVDEHSVTVCRYAHG-LSTIQTRW 250
Cdd:COG0673  158 ---AGPADWRFDPELaGGGALLDLGIHDIDLARWL-LGSEPESVSATGGRlvPDRVEVDDTAAATLRFANGaVATLEASW 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497 251 GTfsdpwiQQPQPKCGFVICGRRGTMtcydyathlrlqsaerpegfevpvdevrspFQDpiqyllSVLEGAPFergPLHP 330
Cdd:COG0673  234 VA------PGGERDERLEVYGTKGTL------------------------------FVD------AIRGGEPP---PVSL 268
                        330       340
                 ....*....|....*....|....*
gi 494040497 331 EIARIGQQIVDSAALSAREKRTVPL 355
Cdd:COG0673  269 EDGLRALELAEAAYESARTGRRVEL 293
 
Name Accession Description Interval E-value
MviM COG0673
Predicted dehydrogenase [General function prediction only];
16-355 3.64e-44

Predicted dehydrogenase [General function prediction only];


Pssm-ID: 440437 [Multi-domain]  Cd Length: 295  Bit Score: 153.93  E-value: 3.64e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  16 HMGD-LLRRVHEHPQAEIVGICDEQLGRMQNAIGAFGIpdeRVFTDYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDV 94
Cdd:COG0673   13 GIGRaHAPALAALPGVELVAVADRDPERAEAFAEEYGV---RVYTDYEELLADPDIDAVVIATPNHLHAELAIAALEAGK 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  95 NILVEKPFAGSLTEADEMVAVQKAKGKLLAINWPTRWSACSITAKRLIDEGVIGEVLNVHHYGGNRGPlfhradkvvcep 174
Cdd:COG0673   90 HVLCEKPLALTLEEARELVAAAEEAGVVLMVGFNRRFDPAVRAARELIDSGAIGEIRSVRARFGHPRP------------ 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497 175 tpeEKRASWFYKKDR-GGGSLLDYAGYGATLGTWFqGGRKPIEVTCTMDT--PEGLEVDEHSVTVCRYAHG-LSTIQTRW 250
Cdd:COG0673  158 ---AGPADWRFDPELaGGGALLDLGIHDIDLARWL-LGSEPESVSATGGRlvPDRVEVDDTAAATLRFANGaVATLEASW 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497 251 GTfsdpwiQQPQPKCGFVICGRRGTMtcydyathlrlqsaerpegfevpvdevrspFQDpiqyllSVLEGAPFergPLHP 330
Cdd:COG0673  234 VA------PGGERDERLEVYGTKGTL------------------------------FVD------AIRGGEPP---PVSL 268
                        330       340
                 ....*....|....*....|....*
gi 494040497 331 EIARIGQQIVDSAALSAREKRTVPL 355
Cdd:COG0673  269 EDGLRALELAEAAYESARTGRRVEL 293
GFO_IDH_MocA pfam01408
Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. ...
15-126 2.68e-13

Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.


Pssm-ID: 426248 [Multi-domain]  Cd Length: 120  Bit Score: 65.69  E-value: 2.68e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497   15 MHMGDLLRRvheHPQAEIVGICDEQLGRMQNAIGAFGIPderVFTDYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDV 94
Cdd:pfam01408  14 KHARALNAS---QPGAELVAILDPNSERAEAVAESFGVE---VYSDLEELLNDPEIDAVIVATPNGLHYDLAIAALEAGK 87
                          90       100       110
                  ....*....|....*....|....*....|..
gi 494040497   95 NILVEKPFAGSLTEADEMVAVQKAKGKLLAIN 126
Cdd:pfam01408  88 HVLCEKPLATTVEEAKELVELAKKKGVRVSVG 119
PRK10206 PRK10206
putative oxidoreductase; Provisional
58-153 4.57e-12

putative oxidoreductase; Provisional


Pssm-ID: 182305 [Multi-domain]  Cd Length: 344  Bit Score: 66.39  E-value: 4.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  58 FT-DYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDVNILVEKPFAGSLTEADEMVAVQKAKGKLLAINWPTRWSACSI 136
Cdd:PRK10206  52 FTsDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFL 131
                         90
                 ....*....|....*..
gi 494040497 137 TAKRLIDEGVIGEVLNV 153
Cdd:PRK10206 132 TAKKAIESGKLGEIVEV 148
nat-AmDH_N_like cd24146
N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) ...
16-97 5.05e-03

N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) and similar proteins; The family corresponds to a group of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) that catalyze the reductive amination of ketone and aldehyde substrates using NAD(P)H as the hydride source. nat-AmDHs can naturally catalyze the amination of 'neutral' carbonyl compounds using ammonia. They possess tremendous potential for the efficient asymmetric synthesis of alpha-chiral amines. The family also contains 2,4-diaminopentanoate dehydrogenase (DAPDH) and similar proteins. DAPDH, also known as ORD, is involved in the ornithine fermentation pathway. It catalyzes the oxidative deamination of (2R,4S)-2,4-diaminopentanoate ((2R,4S)-DAP) to yield 2-amino-4-ketopentanoate (AKP). Although DAPDH is more efficient with (2R,4S)-DAP, the diastereoisomer (2R,4R)-DAP can also be metabolized. Different forms of DAPDH exist which utilize NAD(+) (EC 1.4.1.26) or NAD(+)/NADP(+) (EC 1.4.1.12). Members of this family contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal dimerization domain.


Pssm-ID: 467616 [Multi-domain]  Cd Length: 157  Bit Score: 37.14  E-value: 5.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  16 HMG-DLLRRVHEHPQAEIVGICD---EQLGRMQNAIGAFGIPDERVFTDYRACLEKTQPDLVILCPAAAEHGLWT--KRV 89
Cdd:cd24146   10 AMGrGIARYLLEKPGLEIVGAVDrdpAKVGKDLGELGGGAPLGVKVTDDLDAVLAATKPDVVVHATTSFLADVAPqiERL 89

                 ....*...
gi 494040497  90 AEYDVNIL 97
Cdd:cd24146   90 LEAGLNVI 97
 
Name Accession Description Interval E-value
MviM COG0673
Predicted dehydrogenase [General function prediction only];
16-355 3.64e-44

Predicted dehydrogenase [General function prediction only];


Pssm-ID: 440437 [Multi-domain]  Cd Length: 295  Bit Score: 153.93  E-value: 3.64e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  16 HMGD-LLRRVHEHPQAEIVGICDEQLGRMQNAIGAFGIpdeRVFTDYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDV 94
Cdd:COG0673   13 GIGRaHAPALAALPGVELVAVADRDPERAEAFAEEYGV---RVYTDYEELLADPDIDAVVIATPNHLHAELAIAALEAGK 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  95 NILVEKPFAGSLTEADEMVAVQKAKGKLLAINWPTRWSACSITAKRLIDEGVIGEVLNVHHYGGNRGPlfhradkvvcep 174
Cdd:COG0673   90 HVLCEKPLALTLEEARELVAAAEEAGVVLMVGFNRRFDPAVRAARELIDSGAIGEIRSVRARFGHPRP------------ 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497 175 tpeEKRASWFYKKDR-GGGSLLDYAGYGATLGTWFqGGRKPIEVTCTMDT--PEGLEVDEHSVTVCRYAHG-LSTIQTRW 250
Cdd:COG0673  158 ---AGPADWRFDPELaGGGALLDLGIHDIDLARWL-LGSEPESVSATGGRlvPDRVEVDDTAAATLRFANGaVATLEASW 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497 251 GTfsdpwiQQPQPKCGFVICGRRGTMtcydyathlrlqsaerpegfevpvdevrspFQDpiqyllSVLEGAPFergPLHP 330
Cdd:COG0673  234 VA------PGGERDERLEVYGTKGTL------------------------------FVD------AIRGGEPP---PVSL 268
                        330       340
                 ....*....|....*....|....*
gi 494040497 331 EIARIGQQIVDSAALSAREKRTVPL 355
Cdd:COG0673  269 EDGLRALELAEAAYESARTGRRVEL 293
GFO_IDH_MocA pfam01408
Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. ...
15-126 2.68e-13

Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.


Pssm-ID: 426248 [Multi-domain]  Cd Length: 120  Bit Score: 65.69  E-value: 2.68e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497   15 MHMGDLLRRvheHPQAEIVGICDEQLGRMQNAIGAFGIPderVFTDYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDV 94
Cdd:pfam01408  14 KHARALNAS---QPGAELVAILDPNSERAEAVAESFGVE---VYSDLEELLNDPEIDAVIVATPNGLHYDLAIAALEAGK 87
                          90       100       110
                  ....*....|....*....|....*....|..
gi 494040497   95 NILVEKPFAGSLTEADEMVAVQKAKGKLLAIN 126
Cdd:pfam01408  88 HVLCEKPLATTVEEAKELVELAKKKGVRVSVG 119
PRK10206 PRK10206
putative oxidoreductase; Provisional
58-153 4.57e-12

putative oxidoreductase; Provisional


Pssm-ID: 182305 [Multi-domain]  Cd Length: 344  Bit Score: 66.39  E-value: 4.57e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  58 FT-DYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDVNILVEKPFAGSLTEADEMVAVQKAKGKLLAINWPTRWSACSI 136
Cdd:PRK10206  52 FTsDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFL 131
                         90
                 ....*....|....*..
gi 494040497 137 TAKRLIDEGVIGEVLNV 153
Cdd:PRK10206 132 TAKKAIESGKLGEIVEV 148
PRK11579 PRK11579
putative oxidoreductase; Provisional
53-150 8.69e-07

putative oxidoreductase; Provisional


Pssm-ID: 183212 [Multi-domain]  Cd Length: 346  Bit Score: 50.10  E-value: 8.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  53 PDERVFTDYRACLEKTQPDLVILCPAAAEHGLWTKRVAEYDVNILVEKPFAGSLTEADEMVAVQKAKGKLLAINWPTRWS 132
Cdd:PRK11579  48 PTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWD 127
                         90
                 ....*....|....*...
gi 494040497 133 ACSITAKRLIDEGVIGEV 150
Cdd:PRK11579 128 SDFLTLKALLAEGVLGEV 145
GFO_IDH_MocA_C pfam02894
Oxidoreductase family, C-terminal alpha/beta domain; This family of enzymes utilize NADP or ...
139-355 5.49e-06

Oxidoreductase family, C-terminal alpha/beta domain; This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.


Pssm-ID: 427044  Cd Length: 203  Bit Score: 46.64  E-value: 5.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  139 KRLIDEGVIGEVL--NVHHYGGNRGPlfhradkvvceptpeEKRASWFYKKDRGGGSLLDYAGYGATLGTWFQGGRKPIE 216
Cdd:pfam02894   1 KELIENGVLGEVVmvTVHTRDPFRPP---------------QEFKRWRVDPEKSGGALYDLGIHTIDLLIYLFGEPPSVV 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  217 VTCT-MDTpeglevdehSVTVCRYAHG-LSTIQTRWGTFS---DPWIQqpqpkcgfvICGRRGTMTCYDyaTHLRLQSAE 291
Cdd:pfam02894  66 AVYAsEDT---------AFATLEFKNGaVGTLETSGGSIVeanGHRIS---------IHGTKGSIELDG--IDDGLLSVT 125
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 494040497  292 RP--EGFEVPVDEVRSP------FQDPI-----QYLLSVLEGAPFERGPL-HPEIARIGQQIVDSAALSAREKRTVPL 355
Cdd:pfam02894 126 VVgePGWATDDPMVRKGgdevpeFLGSFaggylLEYDAFLEAVRGGKVVLvDAEDGLYALAVIEAAYESAEEGRPVKL 203
nat-AmDH_N_like cd24146
N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) ...
16-97 5.05e-03

N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) and similar proteins; The family corresponds to a group of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) that catalyze the reductive amination of ketone and aldehyde substrates using NAD(P)H as the hydride source. nat-AmDHs can naturally catalyze the amination of 'neutral' carbonyl compounds using ammonia. They possess tremendous potential for the efficient asymmetric synthesis of alpha-chiral amines. The family also contains 2,4-diaminopentanoate dehydrogenase (DAPDH) and similar proteins. DAPDH, also known as ORD, is involved in the ornithine fermentation pathway. It catalyzes the oxidative deamination of (2R,4S)-2,4-diaminopentanoate ((2R,4S)-DAP) to yield 2-amino-4-ketopentanoate (AKP). Although DAPDH is more efficient with (2R,4S)-DAP, the diastereoisomer (2R,4R)-DAP can also be metabolized. Different forms of DAPDH exist which utilize NAD(+) (EC 1.4.1.26) or NAD(+)/NADP(+) (EC 1.4.1.12). Members of this family contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal dimerization domain.


Pssm-ID: 467616 [Multi-domain]  Cd Length: 157  Bit Score: 37.14  E-value: 5.05e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494040497  16 HMG-DLLRRVHEHPQAEIVGICD---EQLGRMQNAIGAFGIPDERVFTDYRACLEKTQPDLVILCPAAAEHGLWT--KRV 89
Cdd:cd24146   10 AMGrGIARYLLEKPGLEIVGAVDrdpAKVGKDLGELGGGAPLGVKVTDDLDAVLAATKPDVVVHATTSFLADVAPqiERL 89

                 ....*...
gi 494040497  90 AEYDVNIL 97
Cdd:cd24146   90 LEAGLNVI 97
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH