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Conserved domains on  [gi|494142654|ref|WP_007082402|]
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lipoprotein [Rhodanobacter fulvus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPAM_2 super family cl26118
Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized ...
 1-26 3.61e-03

Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.


The actual alignment was detected with superfamily member COG5567:

Pssm-ID: 474765  Cd Length: 43  Bit Score: 31.04  E-value: 3.61e-03
                        10        20
                ....*....|....*....|....*.
gi 494142654  1 MRRSLLLLPVCLAVAALAGCGLKGPL 26
Cdd:COG5567   1 MKKLLRLLLLLLLLFTLAGCGLKGPL 26
 
Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-26 3.61e-03

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 31.04  E-value: 3.61e-03
                        10        20
                ....*....|....*....|....*.
gi 494142654  1 MRRSLLLLPVCLAVAALAGCGLKGPL 26
Cdd:COG5567   1 MKKLLRLLLLLLLLFTLAGCGLKGPL 26
 
Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-26 3.61e-03

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 31.04  E-value: 3.61e-03
                        10        20
                ....*....|....*....|....*.
gi 494142654  1 MRRSLLLLPVCLAVAALAGCGLKGPL 26
Cdd:COG5567   1 MKKLLRLLLLLLLLFTLAGCGLKGPL 26
LptE COG2980
Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];
1-25 5.20e-03

Outer membrane lipoprotein LptE/RlpB (LPS assembly) [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442219  Cd Length: 172  Bit Score: 32.57  E-value: 5.20e-03
                         10        20
                 ....*....|....*....|....*..
gi 494142654   1 MRRSLLLLPVCLAVAALAGCG--LKGP 25
Cdd:COG2980    3 MRRLLALLLLLLAVLLLAGCGfhLRGT 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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