|
Name |
Accession |
Description |
Interval |
E-value |
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
1-317 |
3.04e-82 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 253.25 E-value: 3.04e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPGTG----VRLTAALDRDP------------------------DLD 52
Cdd:COG1419 1 MKIKKFVAKDMREALRKVKEELGPDAVILSTRKVKKGGflkkVEVTAAVDEDEaekapaaaaapaaasaaaeeeeleELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 53 FDIAD-----------------QGPPGHQELFDHaqeaLLRHNLPERLRLRLCDLMGRESGATTAQQLLASALDEIFDFS 115
Cdd:COG1419 81 RELAElkelleeqlsglagesaRLPPELAELLER----LLEAGVSPELARELLEKLPEDLSAEEAWRALLEALARRLPVA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 116 PLPEKNTPRALAFVGPPGCGKTLAVAKTAARAVM-KKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQF 194
Cdd:COG1419 157 EDPLLDEGGVIALVGPTGVGKTTTIAKLAARFVLrGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 195 ARMRDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGG 273
Cdd:COG1419 237 ERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGpPIEVYLVLSATTKYEDLKEIVEAFSSLGLDGLILTKLDETASLGS 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 494151589 274 ALYGADSGNLSLCNVSMTAQVADGLTAISPVALAKLLIPSHRAE 317
Cdd:COG1419 317 ILNLLIRTGLPLSYITNGQRVPEDIEVADPERLARLLLGGLEEE 360
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
124-310 |
1.30e-48 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 161.18 E-value: 1.30e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 124 RALAFVGPPGCGKTLAVAKTAARAVMKK-RKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADM 202
Cdd:cd17873 1 RVIALVGPTGVGKTTTLAKLAARYVLKKgKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADALERLSDRDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 203 VLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGALYGADSG 281
Cdd:cd17873 81 ILIDTAGRSPRDKEQLEELKELLGAGeDIEVHLVLSATTKAKDLKEIIERFSPLGYRGLILTKLDETTSLGSVLSVLAES 160
|
170 180
....*....|....*....|....*....
gi 494151589 282 NLSLCNVSMTAQVADGLTAISPVALAKLL 310
Cdd:cd17873 161 QLPVSYVTTGQRVPEDIEVASPLRLARLL 189
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
1-208 |
1.68e-42 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 148.25 E-value: 1.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPG-----TGVRLTAALDRDPDLDFDIAD------------------ 57
Cdd:TIGR03499 1 MKIKKFTAPTMREALKKVKEELGPDAVILSTRKVRKglfgkKFVEVTAAIDEEEAAAASAEEeaskaleqadpkplsata 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 58 --------------------------------------------------QGPPGHQELFDHaqeaLLRHNLPERLRLRL 87
Cdd:TIGR03499 81 eplelpapqeepaapaaqaaepllpeeelrkelealrellerllaglawlQRPPERAKLYER----LLEAGVSEELAREL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 88 CDLMGRESGATTAQQLLASALDEIFDFSPLPE--KNTPRALAFVGPPGCGKTLAVAKTAARAVMK--KRKVAVLTTDYKR 163
Cdd:TIGR03499 157 LEKLPEDADAEDAWRWLREALEGMLPVKPEEDpiLEQGGVIALVGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYR 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 494151589 164 AGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMVLVDTA 208
Cdd:TIGR03499 237 IGAVEQLKTYAEILGIPVKVARDPKELREALDRLRDKDLILIDTA 281
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
1-275 |
5.60e-33 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 126.16 E-value: 5.60e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPGTG------VRLTAALDRDP---------DLDFDIADQGPPGhQE 65
Cdd:PRK05703 1 MKIKKFTAKDMREALKQIKEELGADAVILSNKKVRKGGflgkklVEVTAAVDEDEtpkknpvlrEEKRKPAKSILSL-QA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 66 LFDHAQEALLRHNLPERLRLRLCDL------------------------------MGRE------------SGATTAQQ- 102
Cdd:PRK05703 80 LLEKRPSRTNSQDALLQAENALPEWkkelekpsepkeeepkaaaeskvvqkeldeLRDElkelknlledqlSGLRQVERi 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 103 -------------------LLASALDEIFDFSPLPEKNTPRAL----------------------AFVGPPGCGKTLAVA 141
Cdd:PRK05703 160 ppefaelykrlkrsglspeIAEKLLKLLLEHMPPRERTAWRYLlellanmipvrvedilkqggvvALVGPTGVGKTTTLA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 142 KTAARAVM--KKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMVLVDTASCNPYVDADIK 219
Cdd:PRK05703 240 KLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIE 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 494151589 220 ALGDFM--SVVPSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK05703 320 ELKALIefSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSIL 377
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
123-275 |
4.70e-24 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 97.09 E-value: 4.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 123 PRALAFVGPPGCGKTLAVAKTAARAVMK-KRKVAVLTTDYKRAGGVAQLEAFTRILNIN----------LSLVKTPEEfk 191
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKgGKKVLLVAADTFRAAAVEQLKTYAEILGVVpvaggegadpVAVAKDAVE-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 192 aqFARMRDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADeCADIANAFADC-GVARMVISRLDVAS 269
Cdd:smart00962 79 --LAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIkPDEVLLVSDATTGQD-AVEQAKAFNEAlGLTGIILTKLDGTA 155
|
....*.
gi 494151589 270 RLGGAL 275
Cdd:smart00962 156 KGGAAL 161
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
126-275 |
1.66e-15 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 73.73 E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 126 LAFVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNInlSLVKTPEE-------FKA-QFARM 197
Cdd:pfam00448 3 ILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGV--PVFGSKTGadpaavaFDAvEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 198 RDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVnpagIDA---DECADIANAFAD-CGVARMVISRLDVASRLG 272
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVaPDEVLLV----LDAttgQNAVNQAKAFNEaVGITGVILTKLDGDAKGG 156
|
...
gi 494151589 273 GAL 275
Cdd:pfam00448 157 AAL 159
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
108-154 |
6.74e-03 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 37.45 E-value: 6.74e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 494151589 108 LDEI-FDFSPLPEKNTPRALA------------FVGPPGCGKT-LAVAkTAARAVMKKRKV 154
Cdd:NF038214 62 LEDFdFTAAPGLDKAQIRELAtldfieraenvlLLGPPGTGKThLAIA-LGYAACRQGYRV 121
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
1-317 |
3.04e-82 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 253.25 E-value: 3.04e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPGTG----VRLTAALDRDP------------------------DLD 52
Cdd:COG1419 1 MKIKKFVAKDMREALRKVKEELGPDAVILSTRKVKKGGflkkVEVTAAVDEDEaekapaaaaapaaasaaaeeeeleELR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 53 FDIAD-----------------QGPPGHQELFDHaqeaLLRHNLPERLRLRLCDLMGRESGATTAQQLLASALDEIFDFS 115
Cdd:COG1419 81 RELAElkelleeqlsglagesaRLPPELAELLER----LLEAGVSPELARELLEKLPEDLSAEEAWRALLEALARRLPVA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 116 PLPEKNTPRALAFVGPPGCGKTLAVAKTAARAVM-KKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQF 194
Cdd:COG1419 157 EDPLLDEGGVIALVGPTGVGKTTTIAKLAARFVLrGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYDPEELKEAL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 195 ARMRDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGG 273
Cdd:COG1419 237 ERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGpPIEVYLVLSATTKYEDLKEIVEAFSSLGLDGLILTKLDETASLGS 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 494151589 274 ALYGADSGNLSLCNVSMTAQVADGLTAISPVALAKLLIPSHRAE 317
Cdd:COG1419 317 ILNLLIRTGLPLSYITNGQRVPEDIEVADPERLARLLLGGLEEE 360
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
124-310 |
1.30e-48 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 161.18 E-value: 1.30e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 124 RALAFVGPPGCGKTLAVAKTAARAVMKK-RKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADM 202
Cdd:cd17873 1 RVIALVGPTGVGKTTTLAKLAARYVLKKgKKVALITTDTYRIGAVEQLKTYAEIMGIPVEVAEDPEDLADALERLSDRDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 203 VLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGALYGADSG 281
Cdd:cd17873 81 ILIDTAGRSPRDKEQLEELKELLGAGeDIEVHLVLSATTKAKDLKEIIERFSPLGYRGLILTKLDETTSLGSVLSVLAES 160
|
170 180
....*....|....*....|....*....
gi 494151589 282 NLSLCNVSMTAQVADGLTAISPVALAKLL 310
Cdd:cd17873 161 QLPVSYVTTGQRVPEDIEVASPLRLARLL 189
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
1-208 |
1.68e-42 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 148.25 E-value: 1.68e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPG-----TGVRLTAALDRDPDLDFDIAD------------------ 57
Cdd:TIGR03499 1 MKIKKFTAPTMREALKKVKEELGPDAVILSTRKVRKglfgkKFVEVTAAIDEEEAAAASAEEeaskaleqadpkplsata 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 58 --------------------------------------------------QGPPGHQELFDHaqeaLLRHNLPERLRLRL 87
Cdd:TIGR03499 81 eplelpapqeepaapaaqaaepllpeeelrkelealrellerllaglawlQRPPERAKLYER----LLEAGVSEELAREL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 88 CDLMGRESGATTAQQLLASALDEIFDFSPLPE--KNTPRALAFVGPPGCGKTLAVAKTAARAVMK--KRKVAVLTTDYKR 163
Cdd:TIGR03499 157 LEKLPEDADAEDAWRWLREALEGMLPVKPEEDpiLEQGGVIALVGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYR 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 494151589 164 AGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMVLVDTA 208
Cdd:TIGR03499 237 IGAVEQLKTYAEILGIPVKVARDPKELREALDRLRDKDLILIDTA 281
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
1-275 |
5.60e-33 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 126.16 E-value: 5.60e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPGTG------VRLTAALDRDP---------DLDFDIADQGPPGhQE 65
Cdd:PRK05703 1 MKIKKFTAKDMREALKQIKEELGADAVILSNKKVRKGGflgkklVEVTAAVDEDEtpkknpvlrEEKRKPAKSILSL-QA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 66 LFDHAQEALLRHNLPERLRLRLCDL------------------------------MGRE------------SGATTAQQ- 102
Cdd:PRK05703 80 LLEKRPSRTNSQDALLQAENALPEWkkelekpsepkeeepkaaaeskvvqkeldeLRDElkelknlledqlSGLRQVERi 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 103 -------------------LLASALDEIFDFSPLPEKNTPRAL----------------------AFVGPPGCGKTLAVA 141
Cdd:PRK05703 160 ppefaelykrlkrsglspeIAEKLLKLLLEHMPPRERTAWRYLlellanmipvrvedilkqggvvALVGPTGVGKTTTLA 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 142 KTAARAVM--KKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMVLVDTASCNPYVDADIK 219
Cdd:PRK05703 240 KLAARYALlyGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCDVILIDTAGRSQRDKRLIE 319
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 494151589 220 ALGDFM--SVVPSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK05703 320 ELKALIefSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSIL 377
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
123-275 |
4.70e-24 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 97.09 E-value: 4.70e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 123 PRALAFVGPPGCGKTLAVAKTAARAVMK-KRKVAVLTTDYKRAGGVAQLEAFTRILNIN----------LSLVKTPEEfk 191
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKgGKKVLLVAADTFRAAAVEQLKTYAEILGVVpvaggegadpVAVAKDAVE-- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 192 aqFARMRDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADeCADIANAFADC-GVARMVISRLDVAS 269
Cdd:smart00962 79 --LAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIkPDEVLLVSDATTGQD-AVEQAKAFNEAlGLTGIILTKLDGTA 155
|
....*.
gi 494151589 270 RLGGAL 275
Cdd:smart00962 156 KGGAAL 161
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
94-313 |
1.75e-16 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 79.38 E-value: 1.75e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 94 ESGATTAQQLLASALDEIFDFSPLPEKNTprALAFVGPPGCGKTLAVAKTAARAVMK--KRKVAVLTTDYKRAGGVAQLE 171
Cdd:PRK14722 110 DAAADWAQSVLAANLPVLDSEDALMERGG--VFALMGPTGVGKTTTTAKLAARCVMRfgASKVALLTTDSYRIGGHEQLR 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 172 AFTRILNINLSLVKTPEEFKAQFARMRDADMVLVDTAScnpyVDADIKALGDFMSVV-----PSEPVLVNPAGIDADECA 246
Cdd:PRK14722 188 IFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIG----MSQRDRTVSDQIAMLhgadtPVQRLLLLNATSHGDTLN 263
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 494151589 247 DIANAFADCG---------VARMVISRLDVASRLGGALYGADSGNLSLCNVSMTAQVADGLTaispVALAKLLIPS 313
Cdd:PRK14722 264 EVVQAYRSAAgqpkaalpdLAGCILTKLDEASNLGGVLDTVIRYKLPVHYVSTGQKVPENLY----VATKKFLLKS 335
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
1-275 |
4.86e-16 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 79.07 E-value: 4.86e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPGtGVRLTAALDRDPD--------------------------LDFD 54
Cdd:PRK14723 1 MSVAKFVAASSREAMRQVREALGPDALVLSNRSVAE-GVEIVAMLDEDLGavaasaqayappapaplpaalvapapAAAS 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 55 IADQGPPGHQELFDHAQEAL--LRHNLPERL----------------RLRLCDLM--------------GRESGATTAQQ 102
Cdd:PRK14723 80 IAAPAAVPAPGAIGDLRGELqsMRGMLERQLagllwaagevagrdplRASLFRWLlgagfsgqlarallERLPVGYDRPA 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 103 LLASALDEIFDFSP-LPEKNTPRA----LAFVGPPGCGKTLAVAKTAARAVMK--KRKVAVLTTDYKRAGGVAQLEAFTR 175
Cdd:PRK14723 160 AMAWIRNELATHLPvLRDEDALLAqggvLALVGPTGVGKTTTTAKLAARCVARegADQLALLTTDSFRIGALEQLRIYGR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 176 ILNINLSLVKTPEEFKAQFARMRDADMVLVDTASCNPY---VDADIKALGDfmSVVPSEPVLVNPAGIDADECADIANAF 252
Cdd:PRK14723 240 ILGVPVHAVKDAADLRFALAALGDKHLVLIDTVGMSQRdrnVSEQIAMLCG--VGRPVRRLLLLNAASHGDTLNEVVHAY 317
|
330 340
....*....|....*....|....*.
gi 494151589 253 ---ADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK14723 318 rhgAGEDVDGCIITKLDEATHLGPAL 343
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
1-275 |
9.67e-16 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 77.30 E-value: 9.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIPG-----------------------------------------TGV 39
Cdd:PRK14721 1 MKVRKFLAATSHEVLRKVKEELGPDAVILSNKQVPGgieimalagkdissltsdtpeeatipettvkptapprqkpaSGQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 40 RLTAALDRDPDLDFDIAD-QGPPGHQELfdHAQEALLRHNLPErlrLRLCDLMGRESGATTAQQLLASAldeifDFSPLP 118
Cdd:PRK14721 81 PQPPAIHKQPATQPPAADiPSANIMQEI--RAMRQMLEEQLTT---MGWSNFSQRDPGGMKVLRTLLSA-----GFSPLL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 119 EKNTPRAL------------------------------------AFVGPPGCGKTLAVAKTAARAVMKK--RKVAVLTTD 160
Cdd:PRK14721 151 SRHLLEKLpadrdfeqslkktislltlnlrtiggdeiieqggvyALIGPTGVGKTTTTAKLAARAVIRHgaDKVALLTTD 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 161 YKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMVLVDTASC---NPYVDADIKALGDFMSVVpsEPVLVNP 237
Cdd:PRK14721 231 SYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKHMVLIDTVGMsqrDQMLAEQIAMLSQCGTQV--KHLLLLN 308
|
330 340 350
....*....|....*....|....*....|....*...
gi 494151589 238 AGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK14721 309 ATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
126-275 |
1.66e-15 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 73.73 E-value: 1.66e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 126 LAFVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNInlSLVKTPEE-------FKA-QFARM 197
Cdd:pfam00448 3 ILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQLAEKLGV--PVFGSKTGadpaavaFDAvEKAKA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 198 RDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVnpagIDA---DECADIANAFAD-CGVARMVISRLDVASRLG 272
Cdd:pfam00448 81 ENYDVVLVDTAGRLQNDKNLMDELKKIKRVVaPDEVLLV----LDAttgQNAVNQAKAFNEaVGITGVILTKLDGDAKGG 156
|
...
gi 494151589 273 GAL 275
Cdd:pfam00448 157 AAL 159
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
120-294 |
4.54e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 75.39 E-value: 4.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 120 KNTPRALAFVGPPGCGKTLAVAKTAARAVMKK-RKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARmR 198
Cdd:PRK12724 220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMgKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR-D 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 199 DADMVLVDTASCNPYVDADIKALGDFMSVVPS----EPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGA 274
Cdd:PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEkdsvENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSF 378
|
170 180
....*....|....*....|
gi 494151589 275 LYGADSGNLSLCNVSMTAQV 294
Cdd:PRK12724 379 LELADTYSKSFTYLSVGQEV 398
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
128-275 |
3.22e-14 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 70.09 E-value: 3.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 128 FVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKT----PEEFKA--QFARMRDAD 201
Cdd:cd03115 5 LVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTgtdpASIAQEavEKAKLEGYD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 202 MVLVDTASCN----PYVDAdIKALGDFMSvvPSEPVLVnpagIDA---DECADIANAFADC-GVARMVISRLDVASRLGG 273
Cdd:cd03115 85 VLLVDTAGRLqkdePLMEE-LKKVKEVES--PDEVLLV----LDAttgQEALSQAKAFNEAvGLTGVILTKLDGTAKGGA 157
|
..
gi 494151589 274 AL 275
Cdd:cd03115 158 AL 159
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
126-275 |
1.60e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 71.17 E-value: 1.60e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 126 LAFVGPPGCGKTLAVAKTAARAVMKK--RKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMV 203
Cdd:PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAAQHapRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLV 432
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 494151589 204 LVDTASCNPYVDADIKALGDFMSVVPSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK12727 433 LIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSAL 504
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
127-275 |
2.84e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 70.00 E-value: 2.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 127 AFVGPPGCGKTLAVAKTAARAVMKK--RKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRDADMVL 204
Cdd:PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRHgaSKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVL 339
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 494151589 205 VDTASC---NPYVDADIKALGDfmSVVPSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK06995 340 IDTIGMsqrDRMVSEQIAMLHG--AGAPVKRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLGGAL 411
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
116-272 |
6.27e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 68.77 E-value: 6.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 116 PLPEKNTPRALAFVGPPGCGKTLAVAKTAA----RAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFK 191
Cdd:PRK12723 167 SIIDNLKKRVFILVGPTGVGKTTTIAKLAAiygiNSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLK 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 192 AQFARMRDADMVLVDTASCNPyvdadikalGDFMSVVPSEPVLvNPAGIDAD------------ECADIANAFADCGVAR 259
Cdd:PRK12723 247 EEITQSKDFDLVLVDTIGKSP---------KDFMKLAEMKELL-NACGRDAEfhlavssttktsDVKEIFHQFSPFSYKT 316
|
170
....*....|...
gi 494151589 260 MVISRLDVASRLG 272
Cdd:PRK12723 317 VIFTKLDETTCVG 329
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
72-275 |
3.01e-11 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 62.84 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 72 EALLRHNLPERLRLRLcdlmgrESGATTAQQLLASALDEI---FDFSPLPEKNTpRALAFVGPPGCGKTLAVAKTAARAV 148
Cdd:PRK06731 28 EQYFIHAYAEKLKVKF------ENATMITEEVIEYILEDMsshFNTENVFEKEV-QTIALIGPTGVGKTTTLAKMAWQFH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 149 MKKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKTPEEFKAQFARMRD---ADMVLVDTASCNPYVDADIKALGDFM 225
Cdd:PRK06731 101 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEearVDYILIDTAGKNYRASETVEEMIETM 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 494151589 226 SVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK06731 181 GQVePDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELL 231
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
107-272 |
6.42e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 62.83 E-value: 6.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 107 ALDEIFDFSplpeknTPRALAFVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLVKT 186
Cdd:PRK12726 196 AVEDSFDLS------NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATS 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 187 PEEFKAQFARM---RDADMVLVDTASCNPYVDADIKALGDFMSVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVI 262
Cdd:PRK12726 270 PAELEEAVQYMtyvNCVDHILIDTVGRNYLAEESVSEISAYTDVVhPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFII 349
|
170
....*....|
gi 494151589 263 SRLDVASRLG 272
Cdd:PRK12726 350 TKMDETTRIG 359
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
72-275 |
7.70e-10 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 59.69 E-value: 7.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 72 EALLRHNLPERLRLRLcdlmgRESGATTAQQLLASALDEI---FDFSPLPEKNTpRALAFVGPPGCGKTLAVAKTAARAV 148
Cdd:PRK11889 193 EQYFIHAYAEKLKVKF-----ENATMITEEEVIEYILEDMrshFNTENVFEKEV-QTIALIGPTGVGKTTTLAKMAWQFH 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 149 MKKRKVAVLTTDYKRAGGVAQLEAFTRILNINL-------SLVKTPEEFKAQfARMrdaDMVLVDTASCNPYVDADIKAL 221
Cdd:PRK11889 267 GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEViavrdeaAMTRALTYFKEE-ARV---DYILIDTAGKNYRASETVEEM 342
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 494151589 222 GDFMSVV-PSEPVLVNPAGIDADECADIANAFADCGVARMVISRLDVASRLGGAL 275
Cdd:PRK11889 343 IETMGQVePDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSGELL 397
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
128-208 |
1.64e-07 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 51.03 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 128 FVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRilNINLSLVKTPEE-------FKA-QFARMRD 199
Cdd:cd17874 5 FVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAE--RLGVPVISQNEGadpaavaFDAiQAAKARG 82
|
....*....
gi 494151589 200 ADMVLVDTA 208
Cdd:cd17874 83 IDVVLIDTA 91
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
128-275 |
3.30e-07 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 49.90 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 128 FVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNINLSLV---KTPEEFKAQ---FARMRDAD 201
Cdd:cd18539 5 LVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESgdgQSPVDIAKRaleKAKEEGFD 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 202 MVLVDTAScNPYVD----ADIKALGDFMSvvPSEPVLVnpagIDA---DECADIANAFAD-CGVARMVISRLDVASRLGG 273
Cdd:cd18539 85 VVIVDTAG-RLHIDeelmDELKEIKEVLN--PDEVLLV----VDAmtgQDAVNVAKAFNErLGLTGVVLTKLDGDARGGA 157
|
..
gi 494151589 274 AL 275
Cdd:cd18539 158 AL 159
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
128-275 |
1.74e-06 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 47.57 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 128 FVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNI-------NLSLVKTPEEFKAQFARMRdA 200
Cdd:cd17875 5 FVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKARVpfygsytEKDPVKIAKEGVEKFKKEK-F 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 494151589 201 DMVLVDTASCNPYVDA---DIKALGDfmSVVPSEPVLVNPAGIdADECADIANAFAD-CGVARMVISRLDVASRLGGAL 275
Cdd:cd17875 84 DIIIVDTSGRHKQEEElfeEMKQISD--AVKPDEVILVIDASI-GQAAEDQAKAFKEaVDIGSVIITKLDGHAKGGGAL 159
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
64-208 |
4.48e-06 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 47.79 E-value: 4.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 64 QELFDHAQEALLR--------HNLPERLRLRLcdlmgRESGATTAQQL---LASALDEIFDFSPLP---EKNTPRALAFV 129
Cdd:PRK10416 46 EDLLEELEELLIEadvgvettEEIIEELRERV-----KRKNLKDPEELkelLKEELAEILEPVEKPlniEEKKPFVILVV 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 130 GPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNInlSLVKTPEE-------FKA-QFARMRDAD 201
Cdd:PRK10416 121 GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGV--PVIAQKEGadpasvaFDAiQAAKARGID 198
|
....*..
gi 494151589 202 MVLVDTA 208
Cdd:PRK10416 199 VLIIDTA 205
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
118-275 |
5.46e-06 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 47.52 E-value: 5.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 118 PEKNTPRALAFVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAFTRILNI-------NLSLVKTPEEF 190
Cdd:TIGR01425 95 PKKGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIpfygsyeESDPVKIASEG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 191 KAQFaRMRDADMVLVDTASCNPYVDA---DIKALGDfmSVVPSEPVLVNPAGIdADECADIANAFAD-CGVARMVISRLD 266
Cdd:TIGR01425 175 VEKF-RKEKFDIIIVDTSGRHKQEKElfeEMQQVRE--AIKPDSIIFVMDGSI-GQAAFGQAKAFKDsVEVGSVIITKLD 250
|
....*....
gi 494151589 267 VASRLGGAL 275
Cdd:TIGR01425 251 GHAKGGGAL 259
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
104-208 |
2.20e-05 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 45.73 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 104 LASALDEIFDFSPLPE-------KNTPRALAFVGPPGCGKTLAVAKTAARavMKKRKVAVL--TTDYKRAGGVAQLEAFT 174
Cdd:PRK14974 114 LKEALLEVLSVGDLFDlieeiksKGKPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGFSVViaAGDTFRAGAIEQLEEHA 191
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 494151589 175 RilNINLSLVKTPE-------EFKA-QFARMRDADMVLVDTA 208
Cdd:PRK14974 192 E--RLGVKVIKHKYgadpaavAYDAiEHAKARGIDVVLIDTA 231
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
122-208 |
2.47e-05 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 43.52 E-value: 2.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 122 TPRALAFVGPPGCGKTLAVAKTAARAVMKKRKVAVLTTDYKRAGGVAQLEAF-TRILNINLSLVKTPEEFKAqFARMRDA 200
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIiVGGKKASGSGELRLRLALA-LARKLKP 79
|
....*...
gi 494151589 201 DMVLVDTA 208
Cdd:smart00382 80 DVLILDEI 87
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
1-148 |
9.50e-04 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 40.74 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 1 MRLKTFSAPTMTEAMALVKEHMGSDAIIVSTQDIpGTGVRLTAALDRDPDL---DFDIADQGPPGHQELFDHAQEALLRH 77
Cdd:PRK12727 1 MKIKRFVAPDMRTAFRMVREEHGPDAVILSNRRT-AEGIEIVAASNYDEELvqrALETARSDTPATAAAPAPAPQAPTKP 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 494151589 78 NLPERLRLRLCDLMGresgaTTAQQLLASALDEIFDFSPLPEKNTPRALAFVGPPGCGKTLAVAKTAARAV 148
Cdd:PRK12727 80 AAPVHAPLKLSANAN-----MSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAH 145
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
120-161 |
6.04e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 37.56 E-value: 6.04e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 494151589 120 KNTPRALAFVGPPGCGKTlavakTAARAVMKKRKVAVLTTDY 161
Cdd:COG1223 32 LWPPRKILFYGPPGTGKT-----MLAEALAGELKLPLLTVRL 68
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
64-160 |
6.15e-03 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 37.45 E-value: 6.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 64 QELFDHAQEALLRHnlpERLRLRLCD--LMGRESGATtaQQLLASA-------LDEI-FDFSPLPEKNTPRALA------ 127
Cdd:COG1484 23 DELLAQAACDELSY---EEFLALLLEaeVAEREQRRI--ERRLKAArfpaaktLEDFdFDAQPGLDRRQILELAtldfie 97
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 494151589 128 ------FVGPPGCGKT-LAVAkTAARAVMKKRKVAVLTTD 160
Cdd:COG1484 98 rgenliLLGPPGTGKThLAIA-LGHEACRAGYRVRFTTAP 136
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
108-154 |
6.74e-03 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 37.45 E-value: 6.74e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 494151589 108 LDEI-FDFSPLPEKNTPRALA------------FVGPPGCGKT-LAVAkTAARAVMKKRKV 154
Cdd:NF038214 62 LEDFdFTAAPGLDKAQIRELAtldfieraenvlLLGPPGTGKThLAIA-LGYAACRQGYRV 121
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
124-206 |
7.75e-03 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 37.48 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494151589 124 RALAFVGPPGCGKT--LAVAKTAARAVMKKRKVAVLTTdykraggvaqlEAFTRILnINLSLVKTPEEFKAQFarmRDAD 201
Cdd:COG0593 35 NPLFLYGGVGLGKThlLHAIGNEALENNPGARVVYLTA-----------EEFTNDF-INAIRNNTIEEFKEKY---RSVD 99
|
....*
gi 494151589 202 MVLVD 206
Cdd:COG0593 100 VLLID 104
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
108-145 |
9.13e-03 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 36.44 E-value: 9.13e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 494151589 108 LDEIFDFSPLPEKNT------PRALAFVGPPGCGKTLaVAKTAA 145
Cdd:cd19501 16 LKEVVEFLKNPEKFTklgakiPKGVLLVGPPGTGKTL-LAKAVA 58
|
|
| |
