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Conserved domains on  [gi|494613980|ref|WP_007372225|]
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MULTISPECIES: TraE/TraK family type IV conjugative transfer system protein [Enterobacterales]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraE super family cl05060
TraE protein; This family consists of several bacterial sex pilus assembly and synthesis ...
 1-177 7.32e-20

TraE protein; This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilization of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression. The exact function of the TraE protein is unknown.


The actual alignment was detected with superfamily member pfam05309:

Pssm-ID: 446598  Cd Length: 178  Bit Score: 82.71  E-value: 7.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494613980    1 MNIHNFKKGLVGLQLENKSFKLISASMILANLVLGYAL--LAKTQPITIIPPNLTETAWLDEKAASSSYMKAWALYIADS 78
Cdd:pfam05309   1 MDFKISLSRLKNLLRQRNLLALVLVVLAVANVLLGSLIfrATNTERVVLVPPLVKKPYTVSGGSASAEYLEQMARYVAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494613980   79 FGNANPATLDLLKNSIGPFLDASIYTKVMKAMDDQIDQIKRDRISLSFNPVGVITDPLAvGTFYVTGNQTLEGITGKPST 158
Cdd:pfam05309  81 LLNVTPETVDYQFNELLKLVDPSAYGELKAQLVEEAERIKASNVSSVFYPQSIEVDPKT-LTVEVTGTLKTYVGGKKTSS 159

                         170
                  ....*....|....*....
gi 494613980  159 TPVYYEITVNVKGYRPIIT 177
Cdd:pfam05309 160 ERKTYLLEFRIEGGRLFLK 178
 
Name Accession Description Interval E-value
TraE pfam05309
TraE protein; This family consists of several bacterial sex pilus assembly and synthesis ...
 1-177 7.32e-20

TraE protein; This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilization of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression. The exact function of the TraE protein is unknown.


Pssm-ID: 428420  Cd Length: 178  Bit Score: 82.71  E-value: 7.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494613980    1 MNIHNFKKGLVGLQLENKSFKLISASMILANLVLGYAL--LAKTQPITIIPPNLTETAWLDEKAASSSYMKAWALYIADS 78
Cdd:pfam05309   1 MDFKISLSRLKNLLRQRNLLALVLVVLAVANVLLGSLIfrATNTERVVLVPPLVKKPYTVSGGSASAEYLEQMARYVAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494613980   79 FGNANPATLDLLKNSIGPFLDASIYTKVMKAMDDQIDQIKRDRISLSFNPVGVITDPLAvGTFYVTGNQTLEGITGKPST 158
Cdd:pfam05309  81 LLNVTPETVDYQFNELLKLVDPSAYGELKAQLVEEAERIKASNVSSVFYPQSIEVDPKT-LTVEVTGTLKTYVGGKKTSS 159

                         170
                  ....*....|....*....
gi 494613980  159 TPVYYEITVNVKGYRPIIT 177
Cdd:pfam05309 160 ERKTYLLEFRIEGGRLFLK 178
 
Name Accession Description Interval E-value
TraE pfam05309
TraE protein; This family consists of several bacterial sex pilus assembly and synthesis ...
 1-177 7.32e-20

TraE protein; This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilization of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression. The exact function of the TraE protein is unknown.


Pssm-ID: 428420  Cd Length: 178  Bit Score: 82.71  E-value: 7.32e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494613980    1 MNIHNFKKGLVGLQLENKSFKLISASMILANLVLGYAL--LAKTQPITIIPPNLTETAWLDEKAASSSYMKAWALYIADS 78
Cdd:pfam05309   1 MDFKISLSRLKNLLRQRNLLALVLVVLAVANVLLGSLIfrATNTERVVLVPPLVKKPYTVSGGSASAEYLEQMARYVAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494613980   79 FGNANPATLDLLKNSIGPFLDASIYTKVMKAMDDQIDQIKRDRISLSFNPVGVITDPLAvGTFYVTGNQTLEGITGKPST 158
Cdd:pfam05309  81 LLNVTPETVDYQFNELLKLVDPSAYGELKAQLVEEAERIKASNVSSVFYPQSIEVDPKT-LTVEVTGTLKTYVGGKKTSS 159

                         170
                  ....*....|....*....
gi 494613980  159 TPVYYEITVNVKGYRPIIT 177
Cdd:pfam05309 160 ERKTYLLEFRIEGGRLFLK 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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