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Conserved domains on  [gi|494882506|ref|WP_007608556|]
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glycosyl transferase family 90 [Rhizobium sp. PDO1-076]

Protein Classification

glycosyltransferase family protein( domain architecture ID 581341)

glycosyltransferase family protein may synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_90 super family cl23835
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 139-316 9.74e-19

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


The actual alignment was detected with superfamily member smart00672:

Pssm-ID: 329112  Cd Length: 256  Bit Score: 84.40  E-value: 9.74e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506   139 ERGRAAPAWDDRSGDIVWRGgmngcgwgsfwpedtdNPAV-VQRLRMVRrlkdLAGTDVRLVGVRWSETEFAR--EAERQ 215
Cdd:smart00672  72 EEGNKRTKWSDKNAYAYWRG----------------NPTVaSERLDLIK----CNQSSPELVNARITIQDWPGkcDGEED 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506   216 GLMAEPMASASWLGRKFAIDIDGYSntWS-NLLVRMLYGCCVLKVTSQFgfSQWYYGDLTPWEHYVPVRADMAD--FAEK 292
Cdd:smart00672 132 APGFKKSPLEEQCKHKYKINIEGVA--WSvRLKYILACDSVVLKVKPEY--YEFFSRGLQPWVHYWPIKSDLSCreLKEA 207

                          170       180
                   ....*....|....*....|....
gi 494882506   293 IDWVRSHDSEAKAIAERGRALAQT 316
Cdd:smart00672 208 VDWGNEHDKKAQEIGKRGSEFIQQ 231
 
Name Accession Description Interval E-value
CAP10 smart00672
Putative lipopolysaccharide-modifying enzyme;
139-316 9.74e-19

Putative lipopolysaccharide-modifying enzyme;


Pssm-ID: 214773  Cd Length: 256  Bit Score: 84.40  E-value: 9.74e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506   139 ERGRAAPAWDDRSGDIVWRGgmngcgwgsfwpedtdNPAV-VQRLRMVRrlkdLAGTDVRLVGVRWSETEFAR--EAERQ 215
Cdd:smart00672  72 EEGNKRTKWSDKNAYAYWRG----------------NPTVaSERLDLIK----CNQSSPELVNARITIQDWPGkcDGEED 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506   216 GLMAEPMASASWLGRKFAIDIDGYSntWS-NLLVRMLYGCCVLKVTSQFgfSQWYYGDLTPWEHYVPVRADMAD--FAEK 292
Cdd:smart00672 132 APGFKKSPLEEQCKHKYKINIEGVA--WSvRLKYILACDSVVLKVKPEY--YEFFSRGLQPWVHYWPIKSDLSCreLKEA 207

                          170       180
                   ....*....|....*....|....
gi 494882506   293 IDWVRSHDSEAKAIAERGRALAQT 316
Cdd:smart00672 208 VDWGNEHDKKAQEIGKRGSEFIQQ 231
Glyco_transf_90 pfam05686
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 132-316 4.94e-12

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


Pssm-ID: 310354  Cd Length: 396  Bit Score: 66.35  E-value: 4.94e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506  132 DGFSADRERGRAAPAWDDRSGDIVWRGgmngcgwgsfwpedtdNPAV-VQRLRMVRrlkdLAGTDVRLVGVRWSETEFAR 210
Cdd:pfam05686 140 DLLRKDLKEGNTRVKWEDREPYAYWRG----------------NPSVaETRLELVK----CNRSNPEDWDARLTNQDWDT 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506  211 EAeRQGlmAEPMASASWLGRKFAIDIDGYSntWSnllVRMLY----GCCVLKVTSQFgfSQWYYGDLTPWEHYVPVR--A 284
Cdd:pfam05686 200 EY-RPG--FKHSSLVDQCTHKYKIYIEGVA--WS---VSLKYilacDSLVLHVGPEY--YDFFYRGLKPWVHYWPIKsdD 269

                         170       180       190
                  ....*....|....*....|....*....|..
gi 494882506  285 DMADFAEKIDWVRSHDSEAKAIAERGRALAQT 316
Cdd:pfam05686 270 DCRDLKEAVDWGNAHDDEAQKIAERGSEFIRE 301
 
Name Accession Description Interval E-value
CAP10 smart00672
Putative lipopolysaccharide-modifying enzyme;
139-316 9.74e-19

Putative lipopolysaccharide-modifying enzyme;


Pssm-ID: 214773  Cd Length: 256  Bit Score: 84.40  E-value: 9.74e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506   139 ERGRAAPAWDDRSGDIVWRGgmngcgwgsfwpedtdNPAV-VQRLRMVRrlkdLAGTDVRLVGVRWSETEFAR--EAERQ 215
Cdd:smart00672  72 EEGNKRTKWSDKNAYAYWRG----------------NPTVaSERLDLIK----CNQSSPELVNARITIQDWPGkcDGEED 131

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506   216 GLMAEPMASASWLGRKFAIDIDGYSntWS-NLLVRMLYGCCVLKVTSQFgfSQWYYGDLTPWEHYVPVRADMAD--FAEK 292
Cdd:smart00672 132 APGFKKSPLEEQCKHKYKINIEGVA--WSvRLKYILACDSVVLKVKPEY--YEFFSRGLQPWVHYWPIKSDLSCreLKEA 207

                          170       180
                   ....*....|....*....|....
gi 494882506   293 IDWVRSHDSEAKAIAERGRALAQT 316
Cdd:smart00672 208 VDWGNEHDKKAQEIGKRGSEFIQQ 231
Glyco_transf_90 pfam05686
Glycosyl transferase family 90; This family of glycosyl transferases are specifically ...
 132-316 4.94e-12

Glycosyl transferase family 90; This family of glycosyl transferases are specifically (mannosyl) glucuronoxylomannan/galactoxylomannan -beta 1,2-xylosyltransferases, EC:2.4.2.-.


Pssm-ID: 310354  Cd Length: 396  Bit Score: 66.35  E-value: 4.94e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506  132 DGFSADRERGRAAPAWDDRSGDIVWRGgmngcgwgsfwpedtdNPAV-VQRLRMVRrlkdLAGTDVRLVGVRWSETEFAR 210
Cdd:pfam05686 140 DLLRKDLKEGNTRVKWEDREPYAYWRG----------------NPSVaETRLELVK----CNRSNPEDWDARLTNQDWDT 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882506  211 EAeRQGlmAEPMASASWLGRKFAIDIDGYSntWSnllVRMLY----GCCVLKVTSQFgfSQWYYGDLTPWEHYVPVR--A 284
Cdd:pfam05686 200 EY-RPG--FKHSSLVDQCTHKYKIYIEGVA--WS---VSLKYilacDSLVLHVGPEY--YDFFYRGLKPWVHYWPIKsdD 269

                         170       180       190
                  ....*....|....*....|....*....|..
gi 494882506  285 DMADFAEKIDWVRSHDSEAKAIAERGRALAQT 316
Cdd:pfam05686 270 DCRDLKEAVDWGNAHDDEAQKIAERGSEFIRE 301
Glyco_trans_1_2 pfam13524
Glycosyl transferases group 1;
273-331 1.46e-03

Glycosyl transferases group 1;


Pssm-ID: 433281 [Multi-domain]  Cd Length: 93  Bit Score: 37.58  E-value: 1.46e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 494882506  273 LTPWEHYVPVRaDMADFAEKIDWVRSHDSEAKAIAERGRalAQTLTFESQAQRATKLIE 331
Cdd:pfam13524  38 FEPGEEILLYR-DPEELAEKIRYLLEHPEERRAIAAAGR--ERVLAEHTYAHRAEQLLD 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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