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Conserved domains on  [gi|494882695|ref|WP_007608745|]
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pentapeptide repeat-containing protein [Rhizobium sp. PDO1-076]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 11442852)

pentapeptide repeat-containing protein (PRP) adopts a beta-helical structure and may have a targeting or structural function

CATH:  2.160.20.10
PubMed:  33925937|9655353

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
3-101 1.54e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.03  E-value: 1.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   3 RIHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAyhATFRKTSMESATFENIDMRSVALRHVDLDGA 82
Cdd:COG1357   40 NLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANL--ANLSGANLSGANLSGANLRGANLSGANLSGA 117

                         90
                 ....*....|....*....
gi 494882695  83 SIRFASLVNLSIAECDVRG 101
Cdd:COG1357  118 DLSGADLSGANLSGADLSG 136
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
3-101 1.54e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.03  E-value: 1.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   3 RIHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAyhATFRKTSMESATFENIDMRSVALRHVDLDGA 82
Cdd:COG1357   40 NLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANL--ANLSGANLSGANLSGANLRGANLSGANLSGA 117

                         90
                 ....*....|....*....
gi 494882695  83 SIRFASLVNLSIAECDVRG 101
Cdd:COG1357  118 DLSGADLSGANLSGADLSG 136
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
2-79 9.30e-09

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 48.81  E-value: 9.30e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 494882695    2 IRIHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDL 79
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
PRK15196 PRK15196
type III secretion system effector PipB2;
4-105 7.46e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 43.46  E-value: 7.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   4 IHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGAS 83
Cdd:PRK15196 154 LKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGAN 233

                         90       100
                 ....*....|....*....|..
gi 494882695  84 IRFASLVNLSIAECDVRGMSID 105
Cdd:PRK15196 234 LQHASLLGCSMIECNCSGANMD 255
 
Name Accession Description Interval E-value
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
3-101 1.54e-11

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.03  E-value: 1.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   3 RIHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAyhATFRKTSMESATFENIDMRSVALRHVDLDGA 82
Cdd:COG1357   40 NLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANL--ANLSGANLSGANLSGANLRGANLSGANLSGA 117

                         90
                 ....*....|....*....
gi 494882695  83 SIRFASLVNLSIAECDVRG 101
Cdd:COG1357  118 DLSGADLSGANLSGADLSG 136
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
14-96 2.57e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 54.95  E-value: 2.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695  14 FEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGASIRFASLVNLS 93
Cdd:COG1357   89 LSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGAN 168


                 ...
gi 494882695  94 IAE 96
Cdd:COG1357  169 LAN 171
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
14-101 2.73e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 54.95  E-value: 2.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695  14 FEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMrsVALRHVDLDGASIRFASLVNLS 93
Cdd:COG1357   31 LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANL--ANLSGANLSGANLSGANLRGAN 108


                 ....*...
gi 494882695  94 IAECDVRG 101
Cdd:COG1357  109 LSGANLSG 116
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
1-96 5.72e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 54.18  E-value: 5.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   1 MIRIHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKtsmesATFENIDMRSVALRHVDLD 80
Cdd:COG1357   86 LANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSG-----ANLSGADLSGADLSGANLS 160

                         90
                 ....*....|....*.
gi 494882695  81 GASIRFASLVNLSIAE 96
Cdd:COG1357  161 GANLSGANLANLEGAD 176
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
4-101 2.36e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 52.25  E-value: 2.36e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   4 IHNAALPASEFEDANLSGSRFIDVNLEEAvFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGAS 83
Cdd:COG1357    2 LSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGAD 80

                         90
                 ....*....|....*...
gi 494882695  84 IRFASLVNLSiaECDVRG 101
Cdd:COG1357   81 LSGANLANLS--GANLSG 96
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
2-106 7.67e-09

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 51.10  E-value: 7.67e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   2 IRIHNAALPASEFEDANLSGSRFIDVNLEEA-------------VFSDVNLDNVLISDARAYHATFRKTSMESATFENID 68
Cdd:COG1357   44 ANLTGANLSGADLSGADLSGANLSGADLSGAnltgadlsganlaNLSGANLSGANLSGANLRGANLSGANLSGADLSGAD 123

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 494882695  69 MRSVALRHVDLDGASIRFASLVNLSIAECDVRGMSIDG 106
Cdd:COG1357  124 LSGANLSGADLSGANLSGANLSGADLSGADLSGANLSG 161
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
2-79 9.30e-09

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 48.81  E-value: 9.30e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 494882695    2 IRIHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDL 79
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
3-101 2.17e-08

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 49.94  E-value: 2.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   3 RIHNAALPASEFEDANLSGSRFI---DVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDL 79
Cdd:COG1357   65 NLSGADLSGANLTGADLSGANLAnlsGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANL 144

                         90       100
                 ....*....|....*....|..
gi 494882695  80 DGASIRFASLVNLSIAECDVRG 101
Cdd:COG1357  145 SGADLSGADLSGANLSGANLSG 166
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
18-101 5.71e-06

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 43.39  E-value: 5.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695  18 NLSGSRFIDVNLEEAVFSDVNLDNVLISDArAYHATFRKTSMESATFENIDMRSVALRHVDLDGASIRFASLVNLSIAEC 97
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGA 79


                 ....
gi 494882695  98 DVRG 101
Cdd:COG1357   80 DLSG 83
PRK15196 PRK15196
type III secretion system effector PipB2;
4-105 7.46e-06

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 43.46  E-value: 7.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   4 IHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGAS 83
Cdd:PRK15196 154 LKGAVLTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGAN 233

                         90       100
                 ....*....|....*....|..
gi 494882695  84 IRFASLVNLSIAECDVRGMSID 105
Cdd:PRK15196 234 LQHASLLGCSMIECNCSGANMD 255
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 12-48 6.06e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.01  E-value: 6.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 494882695   12 SEFEDANLSGSRFIDVNLEEAVFSDVNLDNVLISDAR 48
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGAN 37
PRK15196 PRK15196
type III secretion system effector PipB2;
4-97 7.59e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 37.68  E-value: 7.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   4 IHNAALPASEFEDANLSGSRFIDVNLEEAVFSDVNLdnvliSDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGAS 83
Cdd:PRK15196 234 LQHASLLGCSMIECNCSGANMDHTNLSGATLIRADM-----SGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGAD 308

                         90
                 ....*....|....
gi 494882695  84 IRFASLVNLSIAEC 97
Cdd:PRK15196 309 LAEANLNNTCFKDC 322
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
22-85 2.03e-03

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 34.56  E-value: 2.03e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 494882695   22 SRFIDV-----NLEEAVFSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGASIR 85
Cdd:pfam13599   1 ADFTRCsfegcKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFS 69
PRK15196 PRK15196
type III secretion system effector PipB2;
7-112 3.17e-03

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 36.14  E-value: 3.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494882695   7 AALPASEFEDANLSGSRFIDVNLeeavfSDVNLDNVLISDARAYHATFRKTSMESATFENIDMRSVALRHVDLDGASIRF 86
Cdd:PRK15196 227 ANLTGANLQHASLLGCSMIECNC-----SGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFIS 301

                         90       100
                 ....*....|....*....|....*.
gi 494882695  87 ASLVNLSIAECDVRGMSIDGYLVTDL 112
Cdd:PRK15196 302 TNLDGADLAEANLNNTCFKDCTLTHL 327
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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