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Conserved domains on  [gi|494889109|ref|WP_007615155|]
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MULTISPECIES: dTMP kinase [Bacillus]

Protein Classification

dTMP kinase( domain architecture ID 11414784)

dTMP (thymidylate) kinase catalyzes the reversible phosphorylation of deoxythymidine monophosphate (dTMP) to deoxythymidine diphosphate (dTDP) using ATP as a phosphoryl donor

CATH:  3.40.50.300
EC:  2.7.4.9
PubMed:  23394555
SCOP:  4004030

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
1-208 7.13e-98

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


:

Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 282.82  E-value: 7.13e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   1 MSGLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTlMDAKTEALLYAAARRQHLAE 80
Cdd:COG0125    1 MKGKFIVFEGIDGSGKSTQIKLLAEYLEARGYDVVLTREPGGTPLGEAIRELLLGDNED-MSPRTELLLFAADRAQHVEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  81 KVQPALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDTMPDVTIYFSIEPEEGLKRITSNdSREKNRLDLE 160
Cdd:COG0125   80 VIRPALAAGKIVICDRYVDSSLAYQGGGRGLDLEWIRQLNRFATGGLKPDLTILLDVPPEVALARARAR-GGELDRFESE 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 494889109 161 ALHFHTKVREGYQKVMQRFPERFHTIDASKKKELVIQDALQVINEALK 208
Cdd:COG0125  159 DLEFHERVREGYLELAAKEPERIVVIDASQSIEEVHAEIREALAELLK 206
 
Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
1-208 7.13e-98

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 282.82  E-value: 7.13e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   1 MSGLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTlMDAKTEALLYAAARRQHLAE 80
Cdd:COG0125    1 MKGKFIVFEGIDGSGKSTQIKLLAEYLEARGYDVVLTREPGGTPLGEAIRELLLGDNED-MSPRTELLLFAADRAQHVEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  81 KVQPALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDTMPDVTIYFSIEPEEGLKRITSNdSREKNRLDLE 160
Cdd:COG0125   80 VIRPALAAGKIVICDRYVDSSLAYQGGGRGLDLEWIRQLNRFATGGLKPDLTILLDVPPEVALARARAR-GGELDRFESE 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 494889109 161 ALHFHTKVREGYQKVMQRFPERFHTIDASKKKELVIQDALQVINEALK 208
Cdd:COG0125  159 DLEFHERVREGYLELAAKEPERIVVIDASQSIEEVHAEIREALAELLK 206
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
4-205 2.73e-89

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 261.05  E-value: 2.73e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   4 LFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTLMDAKTEALLYAAARRQHLAEKVQ 83
Cdd:cd01672    1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  84 PALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDTMPDVTIYFSIEPEEGLKRITSNDSREknRLDLEALH 163
Cdd:cd01672   81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--RDEQEGLE 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 494889109 164 FHTKVREGYQKVMQRFPERFHTIDASKKKELVIQDALQVINE 205
Cdd:cd01672  159 FHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAILE 200
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
1-198 1.08e-80

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 238.80  E-value: 1.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109    1 MSGLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTLMDAKTEALLYAAARRQHLAE 80
Cdd:TIGR00041   1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLED 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   81 KVQPALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDtMPDVTIYFSIEPEEGLKRITSNDsrEKNRLDLE 160
Cdd:TIGR00041  81 KIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGD-MPDLTIYLDIDPEVALERLRKRG--ELDREEFE 157
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 494889109  161 ALHFHTKVREGYQKVMQRfPERFHTIDASKKKELVIQD 198
Cdd:TIGR00041 158 KLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQD 194
Thymidylate_kin pfam02223
Thymidylate kinase;
8-198 1.03e-62

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 192.90  E-value: 1.03e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109    8 FEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNtlMDAKTEALLYAAARRQHLAEKVQPALK 87
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGIKVVFTREPGGTPIGEKIRELLLRNEE--LSPLTEALLFAADRIQHLEQKIKPALK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   88 EGRIVLCDRFIDSSLAYQGYARGlGIDEVLSINQFAIGdtMPDVTIYFSIEPEEGLKRITSNDSREKNrlDLEALHFHTK 167
Cdd:pfam02223  79 QGKTVIVDRYLFSGIAYQGAKGG-DLDLVLSLNPDVPG--KPDLTFLLDVDPEVALKRLRRRGELEKT--EFEQLDFLRK 153
                         170       180       190
                  ....*....|....*....|....*....|.
gi 494889109  168 VREGYQKVMqRFPERFHTIDASKKKELVIQD 198
Cdd:pfam02223 154 VRERYLELA-KFDERIKIIDASLSIEEVHEE 183
PLN02924 PLN02924
thymidylate kinase
3-211 3.80e-15

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 71.29  E-value: 3.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   3 GLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPggiDIAEQIREVILN--KNNTLMDAKTEALLYAAAR---RQH 77
Cdd:PLN02924  16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP---DRTTSVGQMISAylSNKSQLDDRAIHLLFSANRwekRSL 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  78 LAEKvqpaLKEGRIVLCDRFIDSSLAYQGyARGLGIDEVLSINqfaIGDTMPDVTIYFSIEPEEGLKRITSNDSReknrl 157
Cdd:PLN02924  93 MERK----LKSGTTLVVDRYSYSGVAFSA-AKGLDLEWCKAPE---VGLPAPDLVLYLDISPEEAAERGGYGGER----- 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 494889109 158 dLEALHFHTKVREGYQKVMQrfpERFHTIDASKKKELVIQDALQVINEALKKIQ 211
Cdd:PLN02924 160 -YEKLEFQKKVAKRFQTLRD---SSWKIIDASQSIEEVEKKIREVVLDTVQRCL 209
 
Name Accession Description Interval E-value
Tmk COG0125
Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the ...
1-208 7.13e-98

Thymidylate kinase [Nucleotide transport and metabolism]; Thymidylate kinase is part of the Pathway/BioSystem: Thymidylate biosynthesis


Pssm-ID: 439895 [Multi-domain]  Cd Length: 206  Bit Score: 282.82  E-value: 7.13e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   1 MSGLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTlMDAKTEALLYAAARRQHLAE 80
Cdd:COG0125    1 MKGKFIVFEGIDGSGKSTQIKLLAEYLEARGYDVVLTREPGGTPLGEAIRELLLGDNED-MSPRTELLLFAADRAQHVEE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  81 KVQPALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDTMPDVTIYFSIEPEEGLKRITSNdSREKNRLDLE 160
Cdd:COG0125   80 VIRPALAAGKIVICDRYVDSSLAYQGGGRGLDLEWIRQLNRFATGGLKPDLTILLDVPPEVALARARAR-GGELDRFESE 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 494889109 161 ALHFHTKVREGYQKVMQRFPERFHTIDASKKKELVIQDALQVINEALK 208
Cdd:COG0125  159 DLEFHERVREGYLELAAKEPERIVVIDASQSIEEVHAEIREALAELLK 206
TMPK cd01672
Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the ...
4-205 2.73e-89

Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).


Pssm-ID: 238835  Cd Length: 200  Bit Score: 261.05  E-value: 2.73e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   4 LFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTLMDAKTEALLYAAARRQHLAEKVQ 83
Cdd:cd01672    1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  84 PALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDTMPDVTIYFSIEPEEGLKRITSNDSREknRLDLEALH 163
Cdd:cd01672   81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--RDEQEGLE 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 494889109 164 FHTKVREGYQKVMQRFPERFHTIDASKKKELVIQDALQVINE 205
Cdd:cd01672  159 FHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAILE 200
DTMP_kinase TIGR00041
dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage ...
1-198 1.08e-80

dTMP kinase; Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]


Pssm-ID: 161676  Cd Length: 195  Bit Score: 238.80  E-value: 1.08e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109    1 MSGLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNTLMDAKTEALLYAAARRQHLAE 80
Cdd:TIGR00041   1 MRGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLED 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   81 KVQPALKEGRIVLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIGDtMPDVTIYFSIEPEEGLKRITSNDsrEKNRLDLE 160
Cdd:TIGR00041  81 KIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGD-MPDLTIYLDIDPEVALERLRKRG--ELDREEFE 157
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 494889109  161 ALHFHTKVREGYQKVMQRfPERFHTIDASKKKELVIQD 198
Cdd:TIGR00041 158 KLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQD 194
Thymidylate_kin pfam02223
Thymidylate kinase;
8-198 1.03e-62

Thymidylate kinase;


Pssm-ID: 396690  Cd Length: 184  Bit Score: 192.90  E-value: 1.03e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109    8 FEGPEGAGKTTVLQEMKEILSAEGLPVTATREPGGIDIAEQIREVILNKNNtlMDAKTEALLYAAARRQHLAEKVQPALK 87
Cdd:pfam02223   1 IEGLDGAGKTTQAELLKERLKEQGIKVVFTREPGGTPIGEKIRELLLRNEE--LSPLTEALLFAADRIQHLEQKIKPALK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   88 EGRIVLCDRFIDSSLAYQGYARGlGIDEVLSINQFAIGdtMPDVTIYFSIEPEEGLKRITSNDSREKNrlDLEALHFHTK 167
Cdd:pfam02223  79 QGKTVIVDRYLFSGIAYQGAKGG-DLDLVLSLNPDVPG--KPDLTFLLDVDPEVALKRLRRRGELEKT--EFEQLDFLRK 153
                         170       180       190
                  ....*....|....*....|....*....|.
gi 494889109  168 VREGYQKVMqRFPERFHTIDASKKKELVIQD 198
Cdd:pfam02223 154 VRERYLELA-KFDERIKIIDASLSIEEVHEE 183
PLN02924 PLN02924
thymidylate kinase
3-211 3.80e-15

thymidylate kinase


Pssm-ID: 178512  Cd Length: 220  Bit Score: 71.29  E-value: 3.80e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   3 GLFITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPggiDIAEQIREVILN--KNNTLMDAKTEALLYAAAR---RQH 77
Cdd:PLN02924  16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFP---DRTTSVGQMISAylSNKSQLDDRAIHLLFSANRwekRSL 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  78 LAEKvqpaLKEGRIVLCDRFIDSSLAYQGyARGLGIDEVLSINqfaIGDTMPDVTIYFSIEPEEGLKRITSNDSReknrl 157
Cdd:PLN02924  93 MERK----LKSGTTLVVDRYSYSGVAFSA-AKGLDLEWCKAPE---VGLPAPDLVLYLDISPEEAAERGGYGGER----- 159
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 494889109 158 dLEALHFHTKVREGYQKVMQrfpERFHTIDASKKKELVIQDALQVINEALKKIQ 211
Cdd:PLN02924 160 -YEKLEFQKKVAKRFQTLRD---SSWKIIDASQSIEEVEKKIREVVLDTVQRCL 209
PRK07933 PRK07933
dTMP kinase;
6-156 4.07e-05

dTMP kinase;


Pssm-ID: 236133  Cd Length: 213  Bit Score: 43.04  E-value: 4.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   6 ITFEGPEGAGKTTVLQEMKEILSAEGLPVTATREPG-GIDIAEQI-REVILNKNNTLMD-AKTEALLYAAARRQhLAEKV 82
Cdd:PRK07933   3 IAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRyGRSVHADLaAEALHGRHGDLADsVYAMATLFALDRAG-ARDEL 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 494889109  83 QPALKEGRIVLCDRFIDSSLAYQ-----GYARGLGIDEVLSINQFAIGDTMPDVTIYFSIEPEEGLKRITSNDSREKNR 156
Cdd:PRK07933  82 AGLLAAHDVVILDRYVASNAAYSaarlhQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQDADR 160
AAA_28 pfam13521
AAA domain;
5-174 5.08e-05

AAA domain;


Pssm-ID: 433278 [Multi-domain]  Cd Length: 164  Bit Score: 42.25  E-value: 5.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109    5 FITFEGPEGAGKTTVLQEMKEILsaeGLPVtatrepggidIAEQIREVILNK--NNTLMDAKTEALLYAAARRQHLAEKV 82
Cdd:pfam13521   1 RIVITGGPSTGKTTLAEALAARF---GYPV----------VPEAAREILEELgaDGGDALPWVEDLLAFARGVLEAQLED 67
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   83 QPALKEGRIVLCDRfidSSLAYQGYARGLGIDEVLSINQFAIGDTMpDVTIYFSIEPEeglkrITSNDSReknRLDL-EA 161
Cdd:pfam13521  68 EAAAAANDLLFFDR---GPLDTLAYSRAYGGPCPPELEAAARASRY-DLVFLLPPDPE-----IVQDGER---REDPeER 135
                         170
                  ....*....|...
gi 494889109  162 LHFHTKVREGYQK 174
Cdd:pfam13521 136 ERFHERLREALRE 148
dNK cd01673
Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to ...
5-163 1.57e-04

Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.


Pssm-ID: 238836  Cd Length: 193  Bit Score: 41.06  E-value: 1.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109   5 FITFEGPEGAGKTTVLQEMKEILSAEGLPvtatrEPGGIDIAEqirEVILNK---NNTLMDAKTEALLYAAARRQHLAEK 81
Cdd:cd01673    1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP-----EPVEPDVEG---NPFLEKfyeDPKRWAFPFQLYFLLSRLKQYKDAL 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 494889109  82 VQPALKEGRI----VLCDRFIDSSLAYQGYARGLGIDEVLSINQFAIG-DTMPDVTIYFSIEPEEGLKRItsndsREKNR 156
Cdd:cd01673   73 EHLSTGQGVIlersIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPeLLPPDLVIYLDASPETCLKRI-----KKRGR 147
                        170
                 ....*....|....*
gi 494889109 157 -------LD-LEALH 163
Cdd:cd01673  148 peeqgipLDyLEDLH 162
btuD PRK09536
corrinoid ABC transporter ATPase; Reviewed
3-46 2.28e-03

corrinoid ABC transporter ATPase; Reviewed


Pssm-ID: 236554 [Multi-domain]  Cd Length: 402  Bit Score: 38.28  E-value: 2.28e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 494889109   3 GLFITFEGPEGAGKTTVLQEMKEILSaeglPVTATREPGGIDIA 46
Cdd:PRK09536  29 GSLVGLVGPNGAGKTTLLRAINGTLT----PTAGTVLVAGDDVE 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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