NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|495051023|ref|WP_007775859|]
View 

YobH family protein [Cronobacter malonaticus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YobH super family cl16524
YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which ...
 2-71 3.46e-24

YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL.


The actual alignment was detected with superfamily member pfam13996:

Pssm-ID: 433635  Cd Length: 70  Bit Score: 85.99  E-value: 3.46e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495051023   2 RYLIRIAALVVVAWAALLFSGYGVLIGSHENAAGLGLQCRYLTARQVVNTQFIHSDSGLIGITACPVLRK 71
Cdd:pfam13996  1 RLIIRTVILIALLWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTDSGVIGVSDCPLLRK 70
 
Name Accession Description Interval E-value
YobH pfam13996
YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which ...
 2-71 3.46e-24

YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL.


Pssm-ID: 433635  Cd Length: 70  Bit Score: 85.99  E-value: 3.46e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495051023   2 RYLIRIAALVVVAWAALLFSGYGVLIGSHENAAGLGLQCRYLTARQVVNTQFIHSDSGLIGITACPVLRK 71
Cdd:pfam13996  1 RLIIRTVILIALLWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTDSGVIGVSDCPLLRK 70
 
Name Accession Description Interval E-value
YobH pfam13996
YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which ...
 2-71 3.46e-24

YobH-like protein; The YobH-like protein family includes the YobH protein from E. coli, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: GYG and GLGL.


Pssm-ID: 433635  Cd Length: 70  Bit Score: 85.99  E-value: 3.46e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495051023   2 RYLIRIAALVVVAWAALLFSGYGVLIGSHENAAGLGLQCRYLTARQVVNTQFIHSDSGLIGITACPVLRK 71
Cdd:pfam13996  1 RLIIRTVILIALLWIGLLLSGYGVLIGSKENAAGLGLQCQYLTARGTSTAQYVHTDSGVIGVSDCPLLRK 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH