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Conserved domains on  [gi|495067403|ref|WP_007792228|]
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MULTISPECIES: arginine ABC transporter permease ArtM [Cronobacter]

Protein Classification

arginine ABC transporter permease ArtM( domain architecture ID 11485213)

arginine ABC transporter permease ArtM is part of the ABC transporter complex ArtPIQMJ involved in arginine transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
artM PRK11122
arginine ABC transporter permease ArtM;
1-222 1.86e-148

arginine ABC transporter permease ArtM;


:

Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 411.66  E-value: 1.86e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFPSLQNY 80
Cdd:PRK11122   1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  81 PWLWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLAILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK11122  81 PWLWHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNEVVLVFK 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495067403 161 STSLAYTITLMEVMGYGQLLYGRTYDVMVFGAAGVIYLIVNGLLTLLMRLIERRALAFERRS 222
Cdd:PRK11122 161 STSLAYTITLMDVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLLMRLIERKALAFERRN 222
 
Name Accession Description Interval E-value
artM PRK11122
arginine ABC transporter permease ArtM;
1-222 1.86e-148

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 411.66  E-value: 1.86e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFPSLQNY 80
Cdd:PRK11122   1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  81 PWLWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLAILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK11122  81 PWLWHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNEVVLVFK 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495067403 161 STSLAYTITLMEVMGYGQLLYGRTYDVMVFGAAGVIYLIVNGLLTLLMRLIERRALAFERRS 222
Cdd:PRK11122 161 STSLAYTITLMDVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLLMRLIERKALAFERRN 222
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 1-221 5.91e-100

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 289.30  E-value: 5.91e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFPSLQNy 80
Cdd:COG4160    6 LFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEWVRE- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  81 PWLWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVF 159
Cdd:COG4160   85 SWLWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRrIILPSALRRALPAYSNEVILML 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495067403 160 KSTSLAYTITLMEVMGYGQLLYGRTYDVM-VFGAAGVIYLIVNGLLTLLMRLIERRALAFERR 221
Cdd:COG4160  165 KATALASTITVMDLTGVARRIYSRTYDPFePFLIAALIYLVITFLLTRLFRLLERRLLRHLRP 227
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 5-214 5.18e-24

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 94.92  E-value: 5.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403    5 LPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYgpgqfpSLQNYpwlw 84
Cdd:TIGR03003  10 LPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYY------VLPDI---- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   85 HVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDT-LAILLPYAFKRALSSYSNEVVLVFKSTS 163
Cdd:TIGR03003  80 GIRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTyRHIILPQAIPPIIPALGNYLVAMFKETP 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 495067403  164 LAYTITLMEVMGYGQLLYGRTYDVMV-FGAAGVIYLIVNGLLTLLMRLIERR 214
Cdd:TIGR03003 160 VLSAITVLELMNQAKSIGNSTFRYLEpMTLVGVFFLILSIISVFFLRRLEAR 211
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 15-206 8.93e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.61  E-value: 8.93e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  15 SLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqnypWLWHVLSEPWLCA 94
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-------LGWGILPGLGLPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  95 LVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTL-AILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEV 173
Cdd:cd06261   77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFrRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156

                        170       180       190
                 ....*....|....*....|....*....|....
gi 495067403 174 MGYGQLLYG-RTYDVMVFGAAGVIYLIVNGLLTL 206
Cdd:cd06261  157 PGPGTGLLLiFAILFPGDLGVAAAVALILLLLSL 190
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 46-214 2.32e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.44  E-value: 2.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   46 WIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqnypWLWHvlsePWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSC 125
Cdd:pfam00528  18 RLLRPLIDLLQALPSFVLAILLVVIAILS-------ILGH----GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  126 GALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEVMGY----GQLLYGRTYDVMVFGAAGVIYLIV 200
Cdd:pfam00528  87 RALGASRWQIFRkIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLllieAILGYDYPEIQGPVLAAALILLLL 166

                         170
                  ....*....|....
gi 495067403  201 NGLLTLLMRLIERR 214
Cdd:pfam00528 167 NLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
artM PRK11122
arginine ABC transporter permease ArtM;
1-222 1.86e-148

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 411.66  E-value: 1.86e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFPSLQNY 80
Cdd:PRK11122   1 MLEYLPELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFPWLQEY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  81 PWLWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLAILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK11122  81 PWLWHLLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNEVVLVFK 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495067403 161 STSLAYTITLMEVMGYGQLLYGRTYDVMVFGAAGVIYLIVNGLLTLLMRLIERRALAFERRS 222
Cdd:PRK11122 161 STSLAYTITLMDVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLLMRLIERKALAFERRN 222
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 1-221 5.91e-100

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 289.30  E-value: 5.91e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFPSLQNy 80
Cdd:COG4160    6 LFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEWVRE- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  81 PWLWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVF 159
Cdd:COG4160   85 SWLWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRrIILPSALRRALPAYSNEVILML 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495067403 160 KSTSLAYTITLMEVMGYGQLLYGRTYDVM-VFGAAGVIYLIVNGLLTLLMRLIERRALAFERR 221
Cdd:COG4160  165 KATALASTITVMDLTGVARRIYSRTYDPFePFLIAALIYLVITFLLTRLFRLLERRLLRHLRP 227
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-214 3.64e-56

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 177.57  E-value: 3.64e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqny 80
Cdd:COG0765    8 LLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPLL------ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  81 pwlwHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVF 159
Cdd:COG0765   82 ----GIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRrIILPQALRIILPPLGNEFISLL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 495067403 160 KSTSLAYTITLMEVMGYGQLLYGRTYDVM-VFGAAGVIYLIVNGLLTLLMRLIERR 214
Cdd:COG0765  158 KDTSLVSVIGVPELTRAAQQIASRTFRPFeVYLVAALIYLVLTLPLSLLARRLERR 213
PRK15069 PRK15069
histidine ABC transporter permease HisM;
9-218 1.45e-38

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 133.25  E-value: 1.45e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   9 LKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFPSLQNYPWLWHVLS 88
Cdd:PRK15069  20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGMYSLEIVRGTDLLDAFFR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  89 EPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSR-KDTLAILLPYAFKRALSSYSNEVVLVFKSTSLAYT 167
Cdd:PRK15069 100 SGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTfKLYRRIILPSALRRALPAYSNEVILMLHATTLAFT 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 495067403 168 ITLMEVMGYGQLLYGRTYDVM-VFGAAGVIYLIVNGLLTLLMRLIERRALAF 218
Cdd:PRK15069 180 ATVPDILKIARDINSATYQPFqAFGIAAVLYLIISFVLISLFRRAERRWLAH 231
PRK15100 PRK15100
cystine ABC transporter permease;
2-215 1.10e-35

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 125.25  E-value: 1.10e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   2 LDYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqnyp 81
Cdd:PRK15100   9 IDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQF------- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  82 wlwHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTL-AILLPYAFKRALSSYSNEVVLVFK 160
Cdd:PRK15100  82 ---GIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLrRAILPQAARTALPPLSNSFISLVK 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 495067403 161 STSLAYTITLMEVMGYGQLLYGRTYDVM-VFGAAGVIYLIVNGLLTLLMRLIERRA 215
Cdd:PRK15100 159 DTSLAATIQVPELFRQAQLITSRTLEVFtMYLAASLIYWIMATVLSALQNRFENQL 214
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
1-221 1.66e-28

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 107.07  E-value: 1.66e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   1 MLDYLPeLLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQ------- 73
Cdd:PRK11123   1 MNEFFP-LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQllltlsd 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  74 -------FPSLQNYPWLWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDT-LAILLPYAFK 145
Cdd:PRK11123  80 gftlnlgFVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIfFRLVMPQMWR 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495067403 146 RALSSYSNEVVLVFKSTSLAYTITLMEVMGYGQLLYGRTYDVMV-FGAAGVIYLIVNGLLTLLMRLIERRALAFERR 221
Cdd:PRK11123 160 HALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTwYIIAAAIYLVITLISQYILKRIELRATRFERR 236
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 5-214 5.18e-24

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 94.92  E-value: 5.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403    5 LPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYgpgqfpSLQNYpwlw 84
Cdd:TIGR03003  10 LPTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYY------VLPDI---- 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   85 HVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDT-LAILLPYAFKRALSSYSNEVVLVFKSTS 163
Cdd:TIGR03003  80 GIRLPALVAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTyRHIILPQAIPPIIPALGNYLVAMFKETP 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 495067403  164 LAYTITLMEVMGYGQLLYGRTYDVMV-FGAAGVIYLIVNGLLTLLMRLIERR 214
Cdd:TIGR03003 160 VLSAITVLELMNQAKSIGNSTFRYLEpMTLVGVFFLILSIISVFFLRRLEAR 211
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 3-214 9.50e-24

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 94.35  E-value: 9.50e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   3 DYLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGpgqFPSLqnypw 82
Cdd:PRK09494  10 PAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFA---LPMA----- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  83 LWHVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVFKS 161
Cdd:PRK09494  82 FNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRyVIGPLALRRMLPPLGNQWIISIKD 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 495067403 162 TSLAYTITLMEVMGYGQ-LLYGRTYDVMVFGAAGVIYLIVNGLLTLLMRLIERR 214
Cdd:PRK09494 162 TSLFIVIGVAELTRQGQeIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERR 215
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 4-112 8.16e-16

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 70.25  E-value: 8.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403    4 YLPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqnypwl 83
Cdd:TIGR01726   1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLI--------- 71

                          90       100
                  ....*....|....*....|....*....
gi 495067403   84 wHVLSEPWLCALVALSLNSAAYTTQLFYG 112
Cdd:TIGR01726  72 -GIRLSPLTAAVIALTLFYGAYLAEIFRG 99
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 15-206 8.93e-15

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 69.61  E-value: 8.93e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  15 SLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqnypWLWHVLSEPWLCA 94
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVL-------LGWGILPGLGLPA 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  95 LVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTL-AILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEV 173
Cdd:cd06261   77 LILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFrRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEA 156

                        170       180       190
                 ....*....|....*....|....*....|....
gi 495067403 174 MGYGQLLYG-RTYDVMVFGAAGVIYLIVNGLLTL 206
Cdd:cd06261  157 PGPGTGLLLiFAILFPGDLGVAAAVALILLLLSL 190
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
8-214 6.94e-12

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 62.50  E-value: 6.94e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   8 LLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPG-QFPSLQNYPWLWHV 86
Cdd:PRK15135   9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQiALNSVTEALGVGQI 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  87 LSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTL-AILLPYAFKRALSSYSNEVVLVFKSTSLA 165
Cdd:PRK15135  89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFrRIMFPAMMRYALPGIGNNWQVILKATALV 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 495067403 166 YTITLMEVMGYGQLLYGRTYDVMVFG-AAGVIYLIVNGLLTLLMRLIERR 214
Cdd:PRK15135 169 SLLGLEDVVKATQLAGKSTWEPFYFAiVCGVIYLVFTTVSNGVLLWLERR 218
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
5-214 5.61e-10

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 57.15  E-value: 5.61e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   5 LPELLKGLHTSLTLTAASIAVALVLSVIFTIILTLKTPVLVWIVRGYITLFTGTPLLVQIFLIYYGPGQFpsLQNYPWLW 84
Cdd:PRK15107  13 LPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGF--LQNVLGLS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  85 HVLSEPWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSCGALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVFKSTS 163
Cdd:PRK15107  91 PKTDIRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKlIILPQAFRAMVPLLLTQGIVLFQDTS 170

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 495067403 164 LAYTITLMEVMGYGQLLYGRT-YDVMVFGAAGVIYLIVNGLLTLLMRLIERR 214
Cdd:PRK15107 171 LVYVLSLADFFRTASTIGERDgTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 46-214 2.32e-05

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 43.44  E-value: 2.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403   46 WIVRGYITLFTGTPLLVQIFLIYYGPGQFpslqnypWLWHvlsePWLCALVALSLNSAAYTTQLFYGAIRAIPEGQWQSC 125
Cdd:pfam00528  18 RLLRPLIDLLQALPSFVLAILLVVIAILS-------ILGH----GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAA 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495067403  126 GALGMSRKDTLA-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMEVMGY----GQLLYGRTYDVMVFGAAGVIYLIV 200
Cdd:pfam00528  87 RALGASRWQIFRkIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLllieAILGYDYPEIQGPVLAAALILLLL 166

                         170
                  ....*....|....
gi 495067403  201 NGLLTLLMRLIERR 214
Cdd:pfam00528 167 NLLVDILQRLLDPR 180
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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