NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|495069392|ref|WP_007794217|]
View 

MULTISPECIES: DUF1330 domain-containing protein [Cronobacter]

Protein Classification

DUF1330 domain-containing protein( domain architecture ID 10009329)

DUF1330 domain-containing protein similar to Agrobacterium Tumefaciens protein Atu0297

CATH:  3.30.70.100
SCOP:  4003602

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5470 COG5470
Uncharacterized conserved protein, DUF1330 family [Function unknown];
3-96 2.30e-26

Uncharacterized conserved protein, DUF1330 family [Function unknown];


:

Pssm-ID: 444221  Cd Length: 95  Bit Score: 92.97  E-value: 2.30e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069392  3 KGYLVAHVTITDPAAYAEYAEAAAQAMQPFNPKIVAWSGQYENLEGEA-HGKHLVLEFDSFDDAKRFYESPAYQAAKAMR 81
Cdd:COG5470   1 PAYWIARVDVTDPEAYAEYAAAAAPALAKHGGRFLVRGGAPEVLEGEWpPDRVVVIEFPSMEAARAWYNSPEYQAAKALR 80

                        90
                ....*....|....*
gi 495069392 82 LKAATGTLVLVEGPE 96
Cdd:COG5470  81 QAAAEGDLIIVEGVD 95
 
Name Accession Description Interval E-value
COG5470 COG5470
Uncharacterized conserved protein, DUF1330 family [Function unknown];
3-96 2.30e-26

Uncharacterized conserved protein, DUF1330 family [Function unknown];


Pssm-ID: 444221  Cd Length: 95  Bit Score: 92.97  E-value: 2.30e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069392  3 KGYLVAHVTITDPAAYAEYAEAAAQAMQPFNPKIVAWSGQYENLEGEA-HGKHLVLEFDSFDDAKRFYESPAYQAAKAMR 81
Cdd:COG5470   1 PAYWIARVDVTDPEAYAEYAAAAAPALAKHGGRFLVRGGAPEVLEGEWpPDRVVVIEFPSMEAARAWYNSPEYQAAKALR 80

                        90
                ....*....|....*
gi 495069392 82 LKAATGTLVLVEGPE 96
Cdd:COG5470  81 QAAAEGDLIIVEGVD 95
DUF1330 pfam07045
Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial ...
 3-95 7.91e-25

Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.


Pssm-ID: 429262  Cd Length: 94  Bit Score: 89.17  E-value: 7.91e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069392   3 KGYLVAHVTITDPAAYAEYAEAAAQAMQPFNPKIVAWSGQYENLEGEAHGKHLVL-EFDSFDDAKRFYESPAYQAAKAMR 81
Cdd:pfam07045  1 KAYWIAHVDVTDPEAYEEYAALAGPALAKHGGRFLARGGKPEVLEGDWAPTRTVViEFPSMEAARAWYNSPEYQAARALR 80

                         90
                 ....*....|....
gi 495069392  82 LKAATGTLVLVEGP 95
Cdd:pfam07045 81 QAAAERDLVIVEGV 94
 
Name Accession Description Interval E-value
COG5470 COG5470
Uncharacterized conserved protein, DUF1330 family [Function unknown];
3-96 2.30e-26

Uncharacterized conserved protein, DUF1330 family [Function unknown];


Pssm-ID: 444221  Cd Length: 95  Bit Score: 92.97  E-value: 2.30e-26
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069392  3 KGYLVAHVTITDPAAYAEYAEAAAQAMQPFNPKIVAWSGQYENLEGEA-HGKHLVLEFDSFDDAKRFYESPAYQAAKAMR 81
Cdd:COG5470   1 PAYWIARVDVTDPEAYAEYAAAAAPALAKHGGRFLVRGGAPEVLEGEWpPDRVVVIEFPSMEAARAWYNSPEYQAAKALR 80

                        90
                ....*....|....*
gi 495069392 82 LKAATGTLVLVEGPE 96
Cdd:COG5470  81 QAAAEGDLIIVEGVD 95
DUF1330 pfam07045
Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial ...
 3-95 7.91e-25

Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.


Pssm-ID: 429262  Cd Length: 94  Bit Score: 89.17  E-value: 7.91e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069392   3 KGYLVAHVTITDPAAYAEYAEAAAQAMQPFNPKIVAWSGQYENLEGEAHGKHLVL-EFDSFDDAKRFYESPAYQAAKAMR 81
Cdd:pfam07045  1 KAYWIAHVDVTDPEAYEEYAALAGPALAKHGGRFLARGGKPEVLEGDWAPTRTVViEFPSMEAARAWYNSPEYQAARALR 80

                         90
                 ....*....|....
gi 495069392  82 LKAATGTLVLVEGP 95
Cdd:pfam07045 81 QAAAERDLVIVEGV 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH