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Conserved domains on  [gi|495069802|ref|WP_007794627|]
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lipoprotein YedD [Cronobacter malonaticus]

Protein Classification

lipoprotein( domain architecture ID 10013507)

uncharacterized lipoprotein similar to Escherichia coli lipoprotein YedD

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK10397 PRK10397
lipoprotein; Provisional
1-137 7.92e-95

lipoprotein; Provisional


:

Pssm-ID: 182428  Cd Length: 137  Bit Score: 269.30  E-value: 7.92e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069802   1 MKKIALGLMMLGLSGCVQVENYNEVVKTPPPAGIAGYWQSKGPQSELVSPEAIASLVVTPAGDTLDCRQWQRVIALPGKL 80
Cdd:PRK10397   1 MKKLAIAGALMALAGCAEVENYNDVVKTPAPAGLAGYWQTKGPQRALVSPEAIASLIVTKEGDTLDCRQWQRVIAVPGKL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 495069802  81 MRRDDTLYNVTNKLEVYKLSREGDTLEYAGMTLERVDRPTTECADFLAKNPLETPLP 137
Cdd:PRK10397  81 TLRSDDLTNVTVKRELYELERDGNTLEYDGMTLQRVDRPTAECAAALDKAPLPTPLP 137
 
Name Accession Description Interval E-value
PRK10397 PRK10397
lipoprotein; Provisional
1-137 7.92e-95

lipoprotein; Provisional


Pssm-ID: 182428  Cd Length: 137  Bit Score: 269.30  E-value: 7.92e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069802   1 MKKIALGLMMLGLSGCVQVENYNEVVKTPPPAGIAGYWQSKGPQSELVSPEAIASLVVTPAGDTLDCRQWQRVIALPGKL 80
Cdd:PRK10397   1 MKKLAIAGALMALAGCAEVENYNDVVKTPAPAGLAGYWQTKGPQRALVSPEAIASLIVTKEGDTLDCRQWQRVIAVPGKL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 495069802  81 MRRDDTLYNVTNKLEVYKLSREGDTLEYAGMTLERVDRPTTECADFLAKNPLETPLP 137
Cdd:PRK10397  81 TLRSDDLTNVTVKRELYELERDGNTLEYDGMTLQRVDRPTAECAAALDKAPLPTPLP 137
YedD pfam13987
YedD-like protein; This family of proteins related to the YedD protein is functionally ...
25-129 1.25e-66

YedD-like protein; This family of proteins related to the YedD protein is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. These proteins are lipoproteins.


Pssm-ID: 433628  Cd Length: 106  Bit Score: 197.05  E-value: 1.25e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069802   25 VVKTPPPAGIAGYWQSKGPQSELVSPEAIASLVVTPAGDTLDCRQWQRVIALPGKLMRRDDTLYNVTNKLEVYKLSREGD 104
Cdd:pfam13987   1 VVKTPAPAGLAGYWQTKGPQSKLVSPEAIASLIVTKEGDTLDCRQWQRVIAVPGKLTRLDDDLYNVTVKLEIYPVEREGN 80
                          90       100
                  ....*....|....*....|....*
gi 495069802  105 TLEYAGMTLERVDRPTTECADFLAK 129
Cdd:pfam13987  81 TLEYDGMTLRRVDRPTVECEDALDK 105
 
Name Accession Description Interval E-value
PRK10397 PRK10397
lipoprotein; Provisional
1-137 7.92e-95

lipoprotein; Provisional


Pssm-ID: 182428  Cd Length: 137  Bit Score: 269.30  E-value: 7.92e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069802   1 MKKIALGLMMLGLSGCVQVENYNEVVKTPPPAGIAGYWQSKGPQSELVSPEAIASLVVTPAGDTLDCRQWQRVIALPGKL 80
Cdd:PRK10397   1 MKKLAIAGALMALAGCAEVENYNDVVKTPAPAGLAGYWQTKGPQRALVSPEAIASLIVTKEGDTLDCRQWQRVIAVPGKL 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 495069802  81 MRRDDTLYNVTNKLEVYKLSREGDTLEYAGMTLERVDRPTTECADFLAKNPLETPLP 137
Cdd:PRK10397  81 TLRSDDLTNVTVKRELYELERDGNTLEYDGMTLQRVDRPTAECAAALDKAPLPTPLP 137
YedD pfam13987
YedD-like protein; This family of proteins related to the YedD protein is functionally ...
25-129 1.25e-66

YedD-like protein; This family of proteins related to the YedD protein is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. These proteins are lipoproteins.


Pssm-ID: 433628  Cd Length: 106  Bit Score: 197.05  E-value: 1.25e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495069802   25 VVKTPPPAGIAGYWQSKGPQSELVSPEAIASLVVTPAGDTLDCRQWQRVIALPGKLMRRDDTLYNVTNKLEVYKLSREGD 104
Cdd:pfam13987   1 VVKTPAPAGLAGYWQTKGPQSKLVSPEAIASLIVTKEGDTLDCRQWQRVIAVPGKLTRLDDDLYNVTVKLEIYPVEREGN 80
                          90       100
                  ....*....|....*....|....*
gi 495069802  105 TLEYAGMTLERVDRPTTECADFLAK 129
Cdd:pfam13987  81 TLEYDGMTLRRVDRPTVECEDALDK 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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