|
Name |
Accession |
Description |
Interval |
E-value |
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
3-369 |
3.03e-102 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 305.58 E-value: 3.03e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVF 82
Cdd:COG2812 9 FDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCRAIAAGSHPDVIEID 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 PvikkkagkdtvcddfiadwrnfvlqnpyfnlnhwlkemgaenQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:COG2812 89 A------------------------------------------EASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHML 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ---TKYGLQ--PEDADDIAHRSE 237
Cdd:COG2812 127 TTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRCQRFDFRRLPPEEIAEHLAkiaEREGIEiePEALALIARAAD 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 238 GNFLKALEtihLSEENKLF-----FELFINLMRLSYQRKIREMKQWSDAVASMGRErQKNFLAYCQRMIRENFIYNFHQR 312
Cdd:COG2812 207 GSMRDALS---LLDQAIAFglldrRELLLDLLEALLAGDVAALLALAEELAKRGRD-LKRFLDDLLSLLRDLLLLKLGPD 282
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 495111615 313 DLVYMNPEEQNFSTRFAPFVNERNVMGIMDELSEAQLHIGQNVNPKMVFFDFSLKMI 369
Cdd:COG2812 283 AELLVNEDERERLQELARRLSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLA 339
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
9-368 |
7.49e-59 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 192.50 E-value: 7.49e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 9 QEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPtCVKFNKLIHPDLHFVFPVIKKK 88
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELNPEEKSD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 89 A-GKDTVcddfiadwRnfvlqnpyfnlnhwlkemgaenqqaqifvkesdEIVRKLSLKSSQGGYKIMIIWLPEKMNVECS 167
Cdd:COG0470 80 QiGIDQI--------R---------------------------------ELGEFLSLTPLEGGRKVVIIDEADAMNEAAA 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 168 NKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKyGLQPEDADDIAHRSEGNFLKALETI 247
Cdd:COG0470 119 NALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRPPSEEEALAWLREE-GVDEDALEAILRLAGGDPRAAINLL 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 248 HLSEENKLFFELFINLmrLSYQRKIREMKQWSDAVASmgrerqkNFLAYCQRMIRENFIYNFHQRDLVymnpeeqnfstr 327
Cdd:COG0470 198 QALAGRKELLEDLAAL--LSRDRALELLDALLKAEAL-------ELLDWLLKWLLDNLPLEYAGEDLA------------ 256
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 495111615 328 fapfvnernvmGIMDELSEAQLHIGQNVNPKMVFFDFSLKM 368
Cdd:COG0470 257 -----------RAYEALSEADRRLGRYANDRLLLEALLAKL 286
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
13-243 |
3.20e-54 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 177.05 E-value: 3.20e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 13 KQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVFPVikkkagkd 92
Cdd:TIGR00678 1 YQQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPE-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 93 tvcddfiadwrnfvlqnpyfnlnhwlkemgaenqQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSNKLLK 172
Cdd:TIGR00678 73 ----------------------------------GQSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLK 118
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 495111615 173 LLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKyGLQPEDADDIAHRSEGNFLKA 243
Cdd:TIGR00678 119 TLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALLQWLIRQ-GISEEAAELLLALAGGSPGRA 188
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
8-206 |
6.43e-46 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 154.68 E-value: 6.43e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 8 GQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVFPvikk 87
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEP---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 88 kagkdtvcddfiadwrnfvlqnpyfnlnhwlkemgaenQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECS 167
Cdd:pfam13177 77 --------------------------------------EGQSIKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAA 118
|
170 180 190
....*....|....*....|....*....|....*....
gi 495111615 168 NKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNI 206
Cdd:pfam13177 119 NSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRF 157
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
3-369 |
2.60e-29 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 116.13 E-value: 2.60e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHfvf 82
Cdd:TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI--- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdtvcddfiadwrnfvlqnpyfnlnhwlkEM-GAENqqaqIFVKESDEIVRKLSLKSSQGGYKIMIIwlpek 161
Cdd:TIGR02397 90 -------------------------------------EIdAASN----NGVDDIREILDNVKYAPSSGKYKVYII----- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 mnVECS-------NKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ---TKYGLQPEDA-- 229
Cdd:TIGR02397 124 --DEVHmlsksafNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKkilDKEGIKIEDEal 201
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 230 DDIAHRSEGNF---LKALETIHLSEENKLFFELFINLMRLSYQRKIREMkqwsdaVASMGRERQKNFLAYCQRMIRENF- 305
Cdd:TIGR02397 202 ELIARAADGSLrdaLSLLDQLISFGNGKITYEDVNELLGLVDDEKLIEL------LEAILNKDTAEALKILDEILESGVd 275
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 306 IYNFHQ------RDLV----------YMNPEEQNFSTRFAPFVNERNVMGIMDELSEAQLHIGQNVNPKMVFFDFSLKMI 369
Cdd:TIGR02397 276 PEKFLEdlieilRDLLlikktpsnllAVLESEQEFLKELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
5-244 |
4.87e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 112.81 E-value: 4.87e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 5 DVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKfnklIHPDlHfvfPV 84
Cdd:PRK07471 20 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA----IDPD-H---PV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 85 IKKKAGKdtvcddfiADWRNFVLQNPYfnlnhwlKEMGAEnQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNV 164
Cdd:PRK07471 92 ARRIAAG--------AHGGLLTLERSW-------NEKGKR-LRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 165 ECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDA-DDIAHRSEGNFLKA 243
Cdd:PRK07471 156 NAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLPDDPrAALAALAEGSVGRA 235
|
.
gi 495111615 244 L 244
Cdd:PRK07471 236 L 236
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
9-357 |
7.13e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 111.72 E-value: 7.13e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 9 QEEAKQRLIAEvkeGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVFPVIKKK 88
Cdd:PRK05707 8 QQSLWQQLAGR---GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 89 AgkdtvcddfiadwrnfvlqnpyfnlnhwlkemgaenqqaqIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSN 168
Cdd:PRK05707 85 T----------------------------------------IKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAAN 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 169 KLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYG-LQPEDADDIAHRSEGNFLKALEti 247
Cdd:PRK05707 125 ALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPeSDERERIELLTLAGGSPLRALQ-- 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 248 hLSEENKLFF--ELFINLMRLSYQRKiremkqwsdAVASMGRERQKN--------FLAYCQRMIR------ENFIYNFHQ 311
Cdd:PRK05707 203 -LHEQGVREQraRVLDGVKKLLKQQQ---------SASQLAESWLKVpllllfdwFCDWAHDILRyqltqdEEGLGLADM 272
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 495111615 312 RDLVymnpeeQNFSTRFAPfvneRNVMGIMDELSEA-QLHIGQ-NVNP 357
Cdd:PRK05707 273 RKVL------QYLAQKSPQ----AKVLALQDWLLEQrQKVLGKaNLNR 310
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
9-204 |
8.13e-26 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 106.38 E-value: 8.13e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 9 QEEAKQRLIAevKEGRIPHAQLICGPEGTGKLPLAIAYARYICCEN-RGEQDACGICPTCVKFNKLIHPDLHFVFPVIKK 87
Cdd:PRK06964 6 QTDDWNRLQA--LRARLPHALLLHGQAGIGKLDFAQHLAQGLLCETpQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 88 KAGKDTVCDDFIADwrnfvlqnpyfnlnhwlKEMGAENQQAqifvkESDEI----VRKLS----LKSSQGGYKIMIIWLP 159
Cdd:PRK06964 84 AEAPGAADEAKEAD-----------------ADEGGKKTKA-----PSKEIkieqVRALLdfcgVGTHRGGARVVVLYPA 141
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 495111615 160 EKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRF 204
Cdd:PRK06964 142 EALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQF 186
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
10-310 |
1.15e-24 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 102.64 E-value: 1.15e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 10 EEAKQRLIAEVKEgRIPHAQLICGPEGTGKLPLAIAYARYICCEN-RGEQDACGICPTCVKFNKLIHPDLHFVFPVIKKK 88
Cdd:PRK08699 6 HQEQWRQIAEHWE-RRPNAWLFAGKKGIGKTAFARFAAQALLCETpAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 89 agkdtvcddfiadwrnfvlqnpyfnlnhwlkEMGaeNQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSN 168
Cdd:PRK08699 85 -------------------------------ENG--RKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAAN 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 169 KLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNI--------------HGIKEPEI-------SKVLQTKYGLQPE 227
Cdd:PRK08699 132 SLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLpapsheealaylreRGVAEPEErlafhsgAPLFDEEPELRAL 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 228 DADDIAHRSEGNFLKALETIHLSEENKLFFELFI--------NLMRLSYQRKIREMKQWSDAVASM-GRERQKNFLAyCQ 298
Cdd:PRK08699 212 RIKLLDILAEPRLLKILDYAALFDKEKLPLAVFVgwmqkwlvDLGLCLQHMKPVYYPAYEDRLLQTaSGFRPRNVFA-AE 290
|
330
....*....|..
gi 495111615 299 RMIRENFIYNFH 310
Cdd:PRK08699 291 DMLKQLAPYGFH 302
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
6-248 |
2.20e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 99.73 E-value: 2.20e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 6 VIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYIccenrgeqdacgicptcvkfnkLIHPDlhfvfpvi 85
Cdd:PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI----------------------LSHPD-------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 86 kKKAGKDTVCD-DFI-ADWRNfVLQNPYFNLNHWLKEMGAENQQAQ--IFVKESDEIVRKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK09112 75 -PAEAPETLADpDPAsPVWRQ-IAQGAHPNLLHITRPFDEKTGKFKtaITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDADDIA---HRSEG 238
Cdd:PRK09112 153 MNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEallQRSKG 232
|
250
....*....|
gi 495111615 239 NFLKALETIH 248
Cdd:PRK09112 233 SVRKALLLLN 242
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
3-219 |
2.80e-23 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 101.07 E-value: 2.80e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCEnrGEQDA-CGICPTCVKFNKLIHPDlhfv 81
Cdd:PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS--GEDPKpCGECESCLAVRRGAHPD---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 82 fpVIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifVKESDEivrKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK14963 87 --VLEIDAASNNSVED----------------------------------VRDLRE---KVLLAPLRGGRKVYILDEAHM 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ 219
Cdd:PRK14963 128 MSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLR 185
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
3-238 |
3.12e-23 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 100.67 E-value: 3.12e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVf 82
Cdd:PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkDTVCDDFIADWRNfvlqnpyfnlnhwlkemgaenqqaqifVKESdeivrkLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14953 94 ---------DAASNRGIDDIRA---------------------------LRDA------VSYTPIKGKYKVYIIDEAHML 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVL-----QTKYGLQPEDADDIAHRSE 237
Cdd:PRK14953 132 TKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLkricnEEKIEYEEKALDLLAQASE 211
|
.
gi 495111615 238 G 238
Cdd:PRK14953 212 G 212
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
3-239 |
5.24e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 99.22 E-value: 5.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGR---------IPHAQLICGPEGTGKLPLAIAYARYICCENRGEQdACGICPTCVKFNKL 73
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAARAARadvaaagsgMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEP-GCGECRACRTVLAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 74 IHPDLHFVFPvikkkagkdtvcddfiadwrnfvlqnpyfnlnhwlkemgaenQQAQIFVKESDEIVRKLSLKSSQGGYKI 153
Cdd:PRK07940 83 THPDVRVVAP------------------------------------------EGLSIGVDEVRELVTIAARRPSTGRWRI 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 154 MIIWLPEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDADDIA 233
Cdd:PRK07940 121 VVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVDPETARRAA 200
|
....*.
gi 495111615 234 HRSEGN 239
Cdd:PRK07940 201 RASQGH 206
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
9-361 |
2.64e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 96.15 E-value: 2.64e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 9 QEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVFP---VI 85
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPdgqSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 86 KkkagKDTVcddfiadwrnfvlqnpyfnlnHWLKEmgaEnqqaqiFVK---ESDEivrklslkssqggyKIMIIWLPEKM 162
Cdd:PRK08058 91 K----KDQI---------------------RYLKE---E------FSKsgvESNK--------------KVYIIEHADKM 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQtKYGLQPEDADDIAHRSeGNFLK 242
Cdd:PRK08058 123 TASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ-EEGISESLATLLAGLT-NSVEE 200
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 243 ALEtihLSEENKLF--FELFINLMRLSYQRKIREMKQWSDAVASMGRERQKnflaycQRMIRENFIYNFhqRDLVYMN-- 318
Cdd:PRK08058 201 ALA---LSEDDWFAqaRALVIKLYEALHEKDLQSFVFVQEKWMPLFKEKDQ------QQLGLDLLLLIY--RDLLYLQlg 269
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 495111615 319 -------PEEQNFSTRFAPFVNERNVMGIMDELSEAQLHIGQNVNPKMVF 361
Cdd:PRK08058 270 eedrlvfREQKEMLQQLALSYSQQQIVAALELILEAKRRLNSNVNFQLVM 319
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
3-244 |
3.04e-21 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 95.26 E-value: 3.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCE-NRGEQDACGICPTCVKFNKLIHPDlhfv 81
Cdd:PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTtNDPKGRPCGTCEMCRAIAEGSAVD---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 82 fpVIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifvkeSDEIVRKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK14950 91 --VIEMDAASHTSVDD-------------------------------------AREIIERVQFRPALARYKVYIIDEVHM 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ---TKYG--LQPEDADDIAHRS 236
Cdd:PRK14950 132 LSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRkiaAAEGinLEPGALEAIARAA 211
|
....*...
gi 495111615 237 EGNFLKAL 244
Cdd:PRK14950 212 TGSMRDAE 219
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
14-251 |
1.38e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 91.02 E-value: 1.38e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 14 QRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRgEQDACGICPTCVKFNKLIHPDLHFVFPvikKKAGKDT 93
Cdd:PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY-QSEACGFCHSCELMQSGNHPDLHVIKP---EKEGKSI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 94 VCDdfiadwrnfvlqnpyfnlnhwlkEMGAENQQAQifvkesdeivrklslKSSQ-GGYKIMIIWLPEKMNVECSNKLLK 172
Cdd:PRK06090 89 TVE-----------------------QIRQCNRLAQ---------------ESSQlNGYRLFVIEPADAMNESASNALLK 130
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495111615 173 LLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDADDIAHRSEgnfLKALETIHLSE 251
Cdd:PRK06090 131 TLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGITVPAYALKLNMGSP---LKTLAMMKEGG 206
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
2-247 |
3.93e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 91.37 E-value: 3.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 2 LFKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDlhfv 81
Cdd:PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMD---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 82 fpVIKKKAgkdtvcddfiadwrnfvlqnpyfnlnhwlkemgAENQQaqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK14962 88 --VIELDA---------------------------------ASNRG----IDEIRKIRDAVGYRPMEGKYKVYIIDEVHM 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQT-----KYGLQPEDADDIAHRS 236
Cdd:PRK14962 129 LTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEvaeaeGIEIDREALSFIAKRA 208
|
250
....*....|.
gi 495111615 237 EGNFLKALETI 247
Cdd:PRK14962 209 SGGLRDALTML 219
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
3-244 |
1.68e-19 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 89.83 E-value: 1.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRG-EQDACGICPTCVKFNKLIHPDLHFV 81
Cdd:PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTaDGEACNECESCVAFNEQRSYNIHEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 82 fpvikkkagkDTVCDDFIADWRNFVLQNPYfnlnhwlkemgaenqQAQIfvkesdeivrklslkssqGGYKIMIIWLPEK 161
Cdd:PRK14971 96 ----------DAASNNSVDDIRNLIEQVRI---------------PPQI------------------GKYKIYIIDEVHM 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ---TKYGL--QPEDADDIAHRS 236
Cdd:PRK14971 133 LSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQyvaSKEGItaEPEALNVIAQKA 212
|
....*...
gi 495111615 237 EGNFLKAL 244
Cdd:PRK14971 213 DGGMRDAL 220
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
14-207 |
8.19e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 86.33 E-value: 8.19e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 14 QRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVFPVIKKKAGKDT 93
Cdd:PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 94 VcddfiadwrnfvlqnpyfnlnhwlKEMgaeNQQAQIFVKesdeivrklslkssQGGYKIMIIWLPEKMNVECSNKLLKL 173
Cdd:PRK06871 92 V------------------------REI---NEKVSQHAQ--------------QGGNKVVYIQGAERLTEAAANALLKT 130
|
170 180 190
....*....|....*....|....*....|....
gi 495111615 174 LEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIH 207
Cdd:PRK06871 131 LEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
3-238 |
3.97e-18 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 85.69 E-value: 3.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDlhfvf 82
Cdd:PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pVIkkkagkdtvcddfiadwrnfvlqnpyfnlnhwlkEM-GAENQQaqifVKESDEIVRKLSLKSSQGGYKIMIIwlPEk 161
Cdd:PRK05563 90 -VI----------------------------------EIdAASNNG----VDEIRDIRDKVKYAPSEAKYKVYII--DE- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 mnV-----ECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLqtKYGLQPE--DADD--- 231
Cdd:PRK05563 128 --VhmlstGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERL--KYILDKEgiEYEDeal 203
|
....*....
gi 495111615 232 --IAHRSEG 238
Cdd:PRK05563 204 rlIARAAEG 212
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
14-200 |
8.06e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 83.58 E-value: 8.06e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 14 QRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVFPvikkKAGKDT 93
Cdd:PRK07993 12 EQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP----EKGKSS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 94 VCDDFIADwrnfvlqnpyfnlnhwlkemgaenqqaqifvkesdeIVRKLSLKSSQGGYKImiIWLP--EKMNVECSNKLL 171
Cdd:PRK07993 88 LGVDAVRE------------------------------------VTEKLYEHARLGGAKV--VWLPdaALLTDAAANALL 129
|
170 180
....*....|....*....|....*....
gi 495111615 172 KLLEEPPAMTVFLLVSEEPDAILQTIQSR 200
Cdd:PRK07993 130 KTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
1-252 |
8.11e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 83.03 E-value: 8.11e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 1 MLFKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCEnrgeqdacGICPTCVKfNKLI---HPD 77
Cdd:PRK07399 1 NLFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ--------GSPSKNIR-RRLEegnHPD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 78 LHFVFPvikkkagkdtvcddfiadwrNFVLQNPYFNLNHWLKEMGAENQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIW 157
Cdd:PRK07399 72 LLWVEP--------------------TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIE 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 158 LPEKMNVECSNKLLKLLEEP-PAmtVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQtKYG----LQPEDAD-- 230
Cdd:PRK07399 132 DAETMNEAAANALLKTLEEPgNG--TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLK-RLGdeeiLNINFPEll 208
|
250 260
....*....|....*....|...
gi 495111615 231 DIAHRSEGNFLKALETIH-LSEE 252
Cdd:PRK07399 209 ALAQGSPGAAIANIEQLQsIPPE 231
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
3-274 |
1.64e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 84.10 E-value: 1.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENrgEQDACGICPTCVK-FNKLIhpdlhfv 81
Cdd:PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSH--KTDLLEPCQECIEnVNNSL------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 82 fpvikkkagkdtvcdDFIadwrnfvlqnpyfnlnhwlkEMGAENQQAqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK07133 88 ---------------DII--------------------EMDAASNNG---VDEIRELIENVKNLPTQSKYKIYIIDEVHM 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEIskVLQTKYGLQPEDAD-------DIAH 234
Cdd:PRK07133 130 LSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEI--VSRLEFILEKENISyeknalkLIAK 207
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 495111615 235 RSEGNFLKALE-----------TIHLSEENKLF----FELFINLMRLSYQRKIRE 274
Cdd:PRK07133 208 LSSGSLRDALSiaeqvsifgnnKITLKNVEELFglvsNENLINLLNLLYSKDIKE 262
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
1-368 |
4.56e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 80.85 E-value: 4.56e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 1 MLFKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYIccenrgeqdacgicptcvkfnklihpdlhf 80
Cdd:PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI------------------------------ 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 81 vfpvIKKKAGKDTVcdDFIadwrNFVLQNpyfnlnhwlkemgaenqQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPE 160
Cdd:PRK05564 51 ----LGKSQQREYV--DII----EFKPIN-----------------KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 161 KMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKY-GLQPEDADDIAHRSE-- 237
Cdd:PRK05564 104 KMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYnDIKEEEKKSAIAFSDgi 183
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 238 -GNFLKALETIHLSEENKLFFELFINLmrlsYQRKIREMKQWSDAVASMgRERQKNFLAYCQRMIRENFIYNFHQRDLVY 316
Cdd:PRK05564 184 pGKVEKFIEDDSLKNIRNMSLEILKDI----KKSNINILLKYENFLIKY-KENWEEILTCILSYIRDSLLYKETGNEELI 258
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 495111615 317 MN----PEEQNFSTRFApfVNERNVMgiMDELSEAQLHIGQNVNPKMVFFDFSLKM 368
Cdd:PRK05564 259 INidkiEDIKHISEKFS--YKKLNKM--IEIINDTRDNLSSNVNPTLVFDSMLIKM 310
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
3-247 |
1.33e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 81.33 E-value: 1.33e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDlhfvf 82
Cdd:PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD----- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pVIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifVKESDEIVRKLSLKSSqggYKIMIIWLPEKM 162
Cdd:PRK14965 90 -VFEIDGASNTGVDD----------------------------------IRELRENVKYLPSRSR---YKIFIIDEVHML 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVL-----QTKYGLQPEDADDIAHRSE 237
Cdd:PRK14965 132 STNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLryiadQEGISISDAALALVARKGD 211
|
250
....*....|
gi 495111615 238 GNFLKALETI 247
Cdd:PRK14965 212 GSMRDSLSTL 221
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
3-239 |
7.53e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 78.95 E-value: 7.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLhfvf 82
Cdd:PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdtvcddfiadwrnfvlqnpyfnlnhwLKEMGAENQQaqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14959 91 -----------------------------------VEIDGASNRG----IDDAKRLKEAIGYAPMEGRYKVFIIDEAHML 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDADD-----IAHRSE 237
Cdd:PRK14959 132 TREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPaavrlIARRAA 211
|
..
gi 495111615 238 GN 239
Cdd:PRK14959 212 GS 213
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
3-218 |
2.10e-15 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 77.83 E-value: 2.10e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLhfvf 82
Cdd:PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwLKEMgAENQQaqifvkesdeivrklsLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK08691 91 --LEIDAASNTGIDN--------------------IREV-LENAQ----------------YAPTAGKYKVYIIDEVHML 131
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVL 218
Cdd:PRK08691 132 SKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHL 187
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
3-204 |
5.35e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 76.14 E-value: 5.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDlhfvf 82
Cdd:PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSD----- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pVIKKKAGKDTVCDDfIADWRNFVLQNPyfnlnhwlkeMGaenqqaqifvkesdeivrklslkssqGGYKIMIIWLPEKM 162
Cdd:PRK14956 92 -VLEIDAASNRGIEN-IRELRDNVKFAP----------MG--------------------------GKYKVYIIDEVHML 133
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRF 204
Cdd:PRK14956 134 TDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDF 175
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
9-204 |
6.05e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 75.00 E-value: 6.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 9 QEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICceNRGEQDACGicptcVKFNKLI----HPDLHFVfpv 84
Cdd:PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVL--ASGPDPAAA-----QRTRQLIaagtHPDLQLV--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 85 ikkkagkdtvcdDFIADwrnfvlqnpyfnlnhwlkeMGAENQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNV 164
Cdd:PRK08769 79 ------------SFIPN-------------------RTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR 127
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 495111615 165 ECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRF 204
Cdd:PRK08769 128 AACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRL 167
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
3-238 |
1.81e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 74.69 E-value: 1.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDlhfvf 82
Cdd:PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pVIKKKAGKDTVCDDFiadwRNFVLQNPYfnlnhwlkemgaenqqaqifvkesdeivrklslKSSQGGYKIMIIWLPEKM 162
Cdd:PRK08451 88 -IIEMDAASNRGIDDI----RELIEQTKY---------------------------------KPSMARFKIFIIDEVHML 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQT-------KYglQPEDADDIAHR 235
Cdd:PRK08451 130 TKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTilekegvSY--EPEALEILARS 207
|
...
gi 495111615 236 SEG 238
Cdd:PRK08451 208 GNG 210
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
3-204 |
2.17e-14 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 74.53 E-value: 2.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKfnklIHPDLHFVF 82
Cdd:PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA----LAPNGPGSI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 PVIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifvkeSDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14952 88 DVVELDAASHGGVDD-------------------------------------TRELRDRAFYAPAQSRYRIFIVDEAHMV 130
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRF 204
Cdd:PRK14952 131 TTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHY 172
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
3-238 |
3.36e-14 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 73.65 E-value: 3.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGE-QDACGICPTCvkfnklihpdlhfv 81
Cdd:PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEdQEPCNQCASC-------------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 82 fpvikKKAGKDTVCDDFIADwrnfvlqnpyfnlnhwlkemGAENQQaqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK06305 82 -----KEISSGTSLDVLEID--------------------GASHRG----IEDIRQINETVLFTPSKSRYKIYIIDEVHM 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDADD-----IAHRS 236
Cdd:PRK06305 133 LTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSReallpIARAA 212
|
..
gi 495111615 237 EG 238
Cdd:PRK06305 213 QG 214
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-244 |
4.73e-14 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 73.54 E-value: 4.73e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKlihpdlhfvf 82
Cdd:PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE---------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkaGKdtvcddFIAdwrnfvlqnpyfnlnhwLKEMGAENQQAqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14960 84 -------GR------FID-----------------LIEIDAASRTK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHML 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDAD-----DIAHRSE 237
Cdd:PRK14960 131 STHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADqdaiwQIAESAQ 210
|
....*..
gi 495111615 238 GNFLKAL 244
Cdd:PRK14960 211 GSLRDAL 217
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
3-205 |
1.26e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 72.11 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCvkfnklihpdlhfvf 82
Cdd:PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC--------------- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikKKAGKDTVCDDFIADwrnfvlqnpyfnlnhwlkemGAENQQAQIFVKESDEIVrklsLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK06647 80 ----KSIDNDNSLDVIEID--------------------GASNTSVQDVRQIKEEIM----FPPASSRYRVYIIDEVHML 131
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFN 205
Cdd:PRK06647 132 SNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFN 174
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
3-244 |
1.68e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 71.65 E-value: 1.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKlihpdlhfvf 82
Cdd:PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINN---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdtvcDDFIAdwrnfvlqnpyfnlnhwLKEMGAENQQAqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14957 85 -------------NSFID-----------------LIEIDAASRTG---VEETKEILDNIQYMPSQGRYKVYLIDEVHML 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEIS---KVLQTKYGLQPEDA--DDIAHRSE 237
Cdd:PRK14957 132 SKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKdqlKIILAKENINSDEQslEYIAYHAK 211
|
....*..
gi 495111615 238 GNFLKAL 244
Cdd:PRK14957 212 GSLRDAL 218
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-239 |
9.49e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 69.12 E-value: 9.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQD----ACGICPTCVKFNKLIHPDl 78
Cdd:PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENttikTCEQCTNCISFNNHNHPD- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 79 hfvfpVIKKKAGKDTVCDDFiadwrnfvlqnpyfnlnhwlkemgaenqqaqifvkesDEIVRKLSLKSSQGGYKIMIIWL 158
Cdd:PRK06645 99 -----IIEIDAASKTSVDDI-------------------------------------RRIIESAEYKPLQGKHKIFIIDE 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 159 PEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQPEDADD-----IA 233
Cdd:PRK06645 137 VHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIealriIA 216
|
....*.
gi 495111615 234 HRSEGN 239
Cdd:PRK06645 217 YKSEGS 222
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
3-316 |
1.01e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 69.49 E-value: 1.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVf 82
Cdd:PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkDTVCDDFIADWRNFVlqNPYFNLNHWLKemgaenqqaqifvkesdeivrklslkssqggYKIMIIWLPEKM 162
Cdd:PRK05896 94 ---------DAASNNGVDEIRNII--DNINYLPTTFK-------------------------------YKVYIIDEAHML 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ---TKYGLQPEDA--DDIAHRSE 237
Cdd:PRK05896 132 STSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKsiaKKEKIKIEDNaiDKIADLAD 211
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 238 GNFLKALE-----------TIHLSEENKLF----FELFINLMRLSYQRKIREMKQWSDAVASMGrerqKNFLAYCQRMIr 302
Cdd:PRK05896 212 GSLRDGLSildqlstfknsEIDIEDINKTFglvdNNKKINLIELIQKNDIEELRNLINELESKG----INFEAFCRDLI- 286
|
330
....*....|....
gi 495111615 303 eNFIYNFhqrdLVY 316
Cdd:PRK05896 287 -NLLIDL----LVY 295
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
3-219 |
1.42e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 65.54 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFnklihpdlhfvf 82
Cdd:PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI------------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdtvcddfiaDWRNFVLqnpyfnlnhwLKEM-GAENQQaqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEK 161
Cdd:PRK14969 83 ------------------DSGRFVD----------LIEVdAASNTQ----VDAMRELLDNAQYAPTRGRFKVYIIDEVHM 130
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 495111615 162 MNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ 219
Cdd:PRK14969 131 LSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQ 188
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
3-253 |
1.76e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 64.83 E-value: 1.76e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKlihpdlhfvf 82
Cdd:PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK---------- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdTVCDDFIadwrnfvlqnpyfnlnhwlkEMGAENQQAqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14961 85 ----------GLCLDLI--------------------EIDAASRTK---VEEMREILDNIYYSPSKSRFKVYLIDEVHML 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLqtKYGLQPEDAD-------DIAHR 235
Cdd:PRK14961 132 SRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFL--KYILIKESIDtdeyalkLIAYH 209
|
250 260
....*....|....*....|..
gi 495111615 236 SEGNFLKAL----ETIHLSEEN 253
Cdd:PRK14961 210 AHGSMRDALnlleHAINLGKGN 231
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
3-275 |
2.45e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 64.51 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEqdacgicptcvkfnklihPDLHFVF 82
Cdd:PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD------------------PNEDFSF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 PVIKKKAGKDTVCDDFiadwRNFVLQnpyfnlnhwlkemgaenqqaqifvkesdeiVRklsLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14970 78 NIFELDAASNNSVDDI----RNLIDQ------------------------------VR---IPPQTGKYKIYIIDEVHML 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ---TKYGLQPED--ADDIAHRSE 237
Cdd:PRK14970 121 SSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAgiaVKEGIKFEDdaLHIIAQKAD 200
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 495111615 238 GNFLKALE-------------TIHLSEE--NKLFFELFINLMRLSYQRKIREM 275
Cdd:PRK14970 201 GALRDALSifdrvvtfcgkniTRQAVTEnlNILDYDTYINVTDLILENKIPEL 253
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
21-205 |
2.82e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 63.50 E-value: 2.82e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 21 KEGRIPHAQLICGpeGTGKLPLAIAYARYICCENRGEQDACGICPTCvkfnKLIH----PDLHFVFP---VIKKKAGKDT 93
Cdd:PRK07276 19 EQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSC----RLIEqgefSDVTVIEPqgqVIKTDTIREL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 94 VcddfiadwRNFvlqnpyfnlnhwlKEMGAENQQaQIFvkesdeivrklslkssqggykimIIWLPEKMNVECSNKLLKL 173
Cdd:PRK07276 93 V--------KNF-------------SQSGYEGKQ-QVF-----------------------IIKDADKMHVNAANSLLKV 127
|
170 180 190
....*....|....*....|....*....|...
gi 495111615 174 LEEP-PAMTVFLLVSEEpDAILQTIQSRTQRFN 205
Cdd:PRK07276 128 IEEPqSEIYIFLLTNDE-NKVLPTIKSRTQIFH 159
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
3-244 |
3.34e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 64.42 E-value: 3.34e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDlhfvf 82
Cdd:PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD----- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pVIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifVKESDEIVRKLSLKSSqggYKIMIIWLPEKM 162
Cdd:PRK14964 87 -VIEIDAASNTSVDD----------------------------------IKVILENSCYLPISSK---FKVYIIDEVHML 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVL-----QTKYGLQPEDADDIAHRSE 237
Cdd:PRK14964 129 SNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLvdiakKENIEHDEESLKLIAENSS 208
|
....*..
gi 495111615 238 GNFLKAL 244
Cdd:PRK14964 209 GSMRNAL 215
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
3-219 |
1.09e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 62.60 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQ--------DACGICPTCVKFNkli 74
Cdd:PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDadylqevtEPCGECESCRDFD--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 75 hpdlhfvfpvikkkAGKDTVCDDFIADWRNFVLQnpyfnlnhwlkemgaenqqaqifVKESDEIVRklsLKSSQGGYKIM 154
Cdd:PRK14955 92 --------------AGTSLNISEFDAASNNSVDD-----------------------IRLLRENVR---YGPQKGRYRVY 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495111615 155 IIWLPEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ 219
Cdd:PRK14955 132 IIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQ 196
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
3-204 |
2.09e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 62.29 E-value: 2.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENrGEQ---DACGICPTC---VKFNKLihp 76
Cdd:PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKptpEPCGKCELCraiAAGNAL--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 77 DlhfvfpVIKKKAGKDTvcddfiadwrnfvlqnpyfnlnhwlkemGAENqqaqifvkesdeiVRKLSLKSS----QGGYK 152
Cdd:PRK14948 91 D------VIEIDAASNT----------------------------GVDN-------------IRELIERAQfapvQARWK 123
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 495111615 153 IMIIwlpekmnVEC-------SNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRF 204
Cdd:PRK14948 124 VYVI-------DEChmlstaaFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRF 175
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
3-219 |
4.43e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 61.11 E-value: 4.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCEN--------RGEQDACGICPTCVKFNkli 74
Cdd:PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRmiddpvylQEVTEPCGECESCRDFD--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 75 hpdlhfvfpvikkkAGKDTVCDDFIADWRNFVLQnpyfnlnhwlkemgaenqqaqifVKESDEIVRklsLKSSQGGYKIM 154
Cdd:PRK14954 92 --------------AGTSLNISEFDAASNNSVDD-----------------------IRQLRENVR---YGPQKGRYRVY 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495111615 155 IIWLPEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ 219
Cdd:PRK14954 132 IIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQ 196
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
26-254 |
1.50e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 57.92 E-value: 1.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 26 PHAQLICGPEGTGKLPLAIAYARYICCENrgeqdACGICPTCVKFNKLIHpdlhfvfpvikkkagkdtvcddfiadwrnf 105
Cdd:PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTK-----ANGFCKTCESCLKILN------------------------------ 51
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 106 vlqNPYFNLNHwlkemgaENQQAQIFVKESD-EIVRKLSLKS-SQGGYKIMIIWLPEKMNVECSNKLLKLLEEPPAMTVF 183
Cdd:PRK05818 52 ---GKYNDFYL-------IFDQKNPIKKEDAlSIINKLNRPSvESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYG 121
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495111615 184 LLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGLQP------EDADDIAHRSEGNFLKALETIHLSEENK 254
Cdd:PRK05818 122 IFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYillsfySVDEQLQAYNNGSFSKLKNIIETLINKK 198
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
137-218 |
3.29e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 57.42 E-value: 3.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 137 EIVRKLSLKS-SQGGYKIMIIWLPEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNihgIKEPEIS 215
Cdd:PRK07132 76 SAINKLYFSSfVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFN---VKEPDQQ 152
|
...
gi 495111615 216 KVL 218
Cdd:PRK07132 153 KIL 155
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
3-244 |
7.32e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 57.58 E-value: 7.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQ-----DACGICPTCVKFNklihpd 77
Cdd:PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEggitaQPCGQCRACTEID------ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 78 lhfvfpvikkkAGKDTvcdDFIadwrnfvlqnpyfnlnhwlkEMGAENQQAqifVKESDEIVRKLSLKSSQGGYKIMIIW 157
Cdd:PRK12323 89 -----------AGRFV---DYI--------------------EMDAASNRG---VDEMAQLLDKAVYAPTAGRFKVYMID 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 158 LPEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQTKYGlqpedADDIAHrsE 237
Cdd:PRK12323 132 EVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILG-----EEGIAH--E 204
|
....*..
gi 495111615 238 GNFLKAL 244
Cdd:PRK12323 205 VNALRLL 211
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
11-216 |
3.51e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 54.42 E-value: 3.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 11 EAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDacgicptcVKFNKLIHPDLHFVFPvikkkAG 90
Cdd:PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAA--------YKISQKIHPDIHEFSP-----QG 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 91 KDtvcddfiadwRNFVLQNPyfnlnhwlkemgaenqqaqifvkesDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSNKL 170
Cdd:PRK05917 71 KG----------RLHSIETP-------------------------RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAF 115
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 495111615 171 LKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISK 216
Cdd:PRK05917 116 LKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEEKTLVSK 161
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
3-201 |
6.52e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.61 E-value: 6.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVkfnklihpDLhfvf 82
Cdd:PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV--------AL---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdtvcddfiadwrnfvlqnpyfnlnhwlkemgAENQQAQIFVKESDeivrklslKSSQGG------------ 150
Cdd:PRK07764 82 ----------------------------------------APGGPGSLDVTEID--------AASHGGvddarelreraf 113
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 151 -------YKIMIIwlPEKMNV--ECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRT 201
Cdd:PRK07764 114 fapaesrYKIFII--DEAHMVtpQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRT 171
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
3-230 |
7.86e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 53.97 E-value: 7.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNKLIHPDLHFVF 82
Cdd:PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 PVIKKKagkdtvcddfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK14958 95 AASRTK-------------------------------------------VEDTRELLDNIPYAPTKGRFKVYLIDEVHML 131
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFniHGIKEPEISKVLQTKYGLQPEDAD 230
Cdd:PRK14958 132 SGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQF--HLAQLPPLQIAAHCQHLLKEENVE 197
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
3-206 |
4.60e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 51.77 E-value: 4.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCVKFNklihpDLHFVf 82
Cdd:PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREID-----EGRFV- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 83 pvikkkagkdtvcdDFIadwrnfvlqnpyfnlnhwlkEMGAENQQAqifVKESDEIVRKLSLKSSQGGYKIMIIWLPEKM 162
Cdd:PRK07003 89 --------------DYV--------------------EMDAASNRG---VDEMAALLERAVYAPVDARFKVYMIDEVHML 131
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 495111615 163 NVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNI 206
Cdd:PRK07003 132 TNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
3-48 |
7.11e-07 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 50.26 E-value: 7.11e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAqLICGPEGTGKLPLAIAYAR 48
Cdd:PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHL-LFAGPPGTGKTTAALALAR 60
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
24-219 |
9.99e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 50.88 E-value: 9.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 24 RIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTCV-----KFNKLIHPDlhfvfpvikkkAGKDTVCDDf 98
Cdd:PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVeiaqgRFVDLIEVD-----------AASRTKVDD- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 99 iadwrnfvlqnpyfnlnhwlkemgaenqqaqifvkeSDEIVRKLSLKSSQGGYKIMIIwlPE-KMNVECS-NKLLKLLEE 176
Cdd:PRK14949 104 ------------------------------------TRELLDNVQYRPSRGRFKVYLI--DEvHMLSRSSfNALLKTLEE 145
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 495111615 177 PPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQ 219
Cdd:PRK14949 146 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLN 188
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
119-206 |
1.30e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 49.07 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 119 KEMGAENQQAQIFVKESDEIVRKLSLKSSQGGYKIMIIWLPEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQ 198
Cdd:PRK06581 58 RETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIR 137
|
....*...
gi 495111615 199 SRTQRFNI 206
Cdd:PRK06581 138 SRCFKINV 145
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
2-253 |
2.52e-06 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 48.83 E-value: 2.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 2 LFKDVIGQEEAKQRLIAEVKEGRIPHAqLICGPEGTGKLPLAIAYARYICCENRGEQDAcgICPTCVKFN---KLIHPDL 78
Cdd:PRK12402 13 LLEDILGQDEVVERLSRAVDSPNLPHL-LVQGPPGSGKTAAVRALARELYGDPWENNFT--EFNVADFFDqgkKYLVEDP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 79 HFVFPVIKKKAGKDTVCDDFiadwrnfvlqnpyfnlNHWLKEMGaenqqaqifvkesdeivrklSLKSSQGGYKIMIIWL 158
Cdd:PRK12402 90 RFAHFLGTDKRIRSSKIDNF----------------KHVLKEYA--------------------SYRPLSADYKTILLDN 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 159 PEKMNVECSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFNIHGIKEPEISKVLQT---KYGLQ--PEDADDIA 233
Cdd:PRK12402 134 AEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESiaeAEGVDydDDGLELIA 213
|
250 260
....*....|....*....|
gi 495111615 234 HRSEGNFLKALETIHLSEEN 253
Cdd:PRK12402 214 YYAGGDLRKAILTLQTAALA 233
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
3-47 |
6.30e-06 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 46.07 E-value: 6.30e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 495111615 3 FKDVIGQEEAKQRLiAEVKE------------GRIPHAQLICGPEGTGKLPLAIAYA 47
Cdd:cd19501 3 FKDVAGCEEAKEEL-KEVVEflknpekftklgAKIPKGVLLVGPPGTGKTLLAKAVA 58
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
118-205 |
8.91e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 46.18 E-value: 8.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 118 LKEMGAE--NQQAQIFVKE------SDEIVRKLSLKSSQggYKIMIIwLPEKMNVECSNKLLKLLEEPPAMTVFLLVSEE 189
Cdd:PRK08485 17 KEELINEfgKKNLRFFIKEefkiedAKEVIAEAYIAESE--EKIIVI-AAPSYGIEAQNALLKILEEPPKNICFIIVAKS 93
|
90
....*....|....*.
gi 495111615 190 PDAILQTIQSRTQRFN 205
Cdd:PRK08485 94 KNLLLPTIRSRLIIEK 109
|
|
| HflB |
COG0465 |
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]; |
3-47 |
3.77e-05 |
|
ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440233 [Multi-domain] Cd Length: 583 Bit Score: 45.41 E-value: 3.77e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 495111615 3 FKDVIGQEEAKQRLiAEVKE------------GRIPHAQLICGPEGTGKLPLAIAYA 47
Cdd:COG0465 141 FDDVAGVDEAKEEL-QEIVDflkdpekftrlgAKIPKGVLLVGPPGTGKTLLAKAVA 196
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-205 |
1.34e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 43.74 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQ-----DACGICPTCVKFNKLIHPD 77
Cdd:PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDggptiDLCGVGEHCQAIMEGRHVD 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495111615 78 lhfvfpVIKKKAGKDTVCDDfiadwrnfvlqnpyfnlnhwlkemgaenqqaqifVKESDEIVRklsLKSSQGGYKIMII- 156
Cdd:PRK09111 103 ------VLEMDAASHTGVDD----------------------------------IREIIESVR---YRPVSARYKVYIId 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 495111615 157 ---WLPEKmnveCSNKLLKLLEEPPAMTVFLLVSEEPDAILQTIQSRTQRFN 205
Cdd:PRK09111 140 evhMLSTA----AFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFD 187
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
3-50 |
1.37e-04 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 43.76 E-value: 1.37e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 495111615 3 FKDVIGQEEAKQRL---IAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYI 50
Cdd:PRK04195 13 LSDVVGNEKAKEQLrewIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
3-67 |
1.43e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 1.43e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495111615 3 FKDVIGQEEAKQRLIAEVKEGRIPHAQLICGPEGTGKLPLAIAYARYICCENRGEQDACGICPTC 67
Cdd:PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
7-48 |
1.46e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 40.34 E-value: 1.46e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 495111615 7 IGQEEAKQR--LIAE-VKEGRIP-HAQLICGPEGTGKLPLAIAYAR 48
Cdd:COG1224 41 VGQVEAREAagIVVKmIKEGKMAgKGILIVGPPGTGKTALAVAIAR 86
|
|
| TIP49 |
pfam06068 |
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and ... |
6-48 |
2.72e-03 |
|
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 399217 [Multi-domain] Cd Length: 347 Bit Score: 39.21 E-value: 2.72e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 495111615 6 VIGQEEAKQR--LIAE-VKEGRIP-HAQLICGPEGTGKLPLAIAYAR 48
Cdd:pfam06068 26 LVGQEKAREAagVIVEmIKEGKIAgRAVLIAGPPGTGKTALAIAISK 72
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
2-47 |
5.17e-03 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 38.88 E-value: 5.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 495111615 2 LFKDVIGQEEAKQRLiAEV----KEGR--------IPHAQLICGPEGTGKLPLAIAYA 47
Cdd:CHL00176 181 TFRDIAGIEEAKEEF-EEVvsflKKPErftavgakIPKGVLLVGPPGTGKTLLAKAIA 237
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
3-48 |
8.10e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 37.56 E-value: 8.10e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 495111615 3 FKDVIGQEEAKQ---RLIAEVKEGRIPHAQ--------LICGPEGTGKLPLAIAYAR 48
Cdd:COG1223 1 LDDVVGQEEAKKklkLIIKELRRRENLRKFglwpprkiLFYGPPGTGKTMLAEALAG 57
|
|
|