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Conserved domains on  [gi|495113484|ref|WP_007838304|]
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MULTISPECIES: Fis family transcriptional regulator [Variovorax]

Protein Classification

similar to DNA-binding protein Fis( domain architecture ID 10006774)

protein similar to DNA-binding protein Fis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fis COG2901
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
1-77 5.58e-40

DNA-binding protein Fis (factor for inversion stimulation) [Transcription];


:

Pssm-ID: 442146 [Multi-domain]  Cd Length: 83  Bit Score: 126.08  E-value: 5.58e-40
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495113484  1 MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKLL 77
Cdd:COG2901   7 ASSPPLRDCVRQALENYFADLDGEPPSDLYDMVLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGLL 83
 
Name Accession Description Interval E-value
Fis COG2901
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
1-77 5.58e-40

DNA-binding protein Fis (factor for inversion stimulation) [Transcription];


Pssm-ID: 442146 [Multi-domain]  Cd Length: 83  Bit Score: 126.08  E-value: 5.58e-40
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495113484  1 MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKLL 77
Cdd:COG2901   7 ASSPPLRDCVRQALENYFADLDGEPPSDLYDMVLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGLL 83
PRK01905 PRK01905
Fis family transcriptional regulator;
1-77 7.21e-36

Fis family transcriptional regulator;


Pssm-ID: 179348 [Multi-domain]  Cd Length: 77  Bit Score: 115.67  E-value: 7.21e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495113484  1 MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKLL 77
Cdd:PRK01905  1 MSKHNIEQCIRDSLDQYFRDLDGSNPHDVYDMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQHGLL 77
HTH_8 pfam02954
Bacterial regulatory protein, Fis family;
34-71 6.62e-09

Bacterial regulatory protein, Fis family;


Pssm-ID: 427077 [Multi-domain]  Cd Length: 40  Bit Score: 46.62  E-value: 6.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 495113484  34 VRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKL 71
Cdd:pfam02954  1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKL 38
 
Name Accession Description Interval E-value
Fis COG2901
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
1-77 5.58e-40

DNA-binding protein Fis (factor for inversion stimulation) [Transcription];


Pssm-ID: 442146 [Multi-domain]  Cd Length: 83  Bit Score: 126.08  E-value: 5.58e-40
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495113484  1 MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKLL 77
Cdd:COG2901   7 ASSPPLRDCVRQALENYFADLDGEPPSDLYDMVLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGLL 83
PRK01905 PRK01905
Fis family transcriptional regulator;
1-77 7.21e-36

Fis family transcriptional regulator;


Pssm-ID: 179348 [Multi-domain]  Cd Length: 77  Bit Score: 115.67  E-value: 7.21e-36
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495113484  1 MSKKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKLL 77
Cdd:PRK01905  1 MSKHNIEQCIRDSLDQYFRDLDGSNPHDVYDMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQHGLL 77
fis PRK00430
DNA-binding transcriptional regulator Fis;
3-77 3.36e-23

DNA-binding transcriptional regulator Fis;


Pssm-ID: 179020 [Multi-domain]  Cd Length: 95  Bit Score: 84.35  E-value: 3.36e-23
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495113484  3 KKHIEDCVRTSLDSYFRDLRGTEPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKLL 77
Cdd:PRK00430 21 QKPLRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGMN 95
HTH_8 pfam02954
Bacterial regulatory protein, Fis family;
34-71 6.62e-09

Bacterial regulatory protein, Fis family;


Pssm-ID: 427077 [Multi-domain]  Cd Length: 40  Bit Score: 46.62  E-value: 6.62e-09
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 495113484  34 VRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKL 71
Cdd:pfam02954  1 LEEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKL 38
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 37-74 7.55e-07

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 44.57  E-value: 7.55e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 495113484  37 VEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEH 74
Cdd:COG2204  380 VERELIERALEETGGNVSRAAELLGISRRTLYRKLKKY 417
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 25-76 6.79e-05

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 38.98  E-value: 6.79e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 495113484  25 EPDGMYEMLVRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVEHKL 76
Cdd:COG3829  396 AEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGI 447
FhlA COG3604
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ...
 34-71 6.62e-04

FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 442823 [Multi-domain]  Cd Length: 338  Bit Score: 35.98  E-value: 6.62e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 495113484  34 VRVVEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKL 71
Cdd:COG3604  295 LEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRM 332
glnG PRK10923
nitrogen regulation protein NR(I); Provisional
 37-73 7.06e-03

nitrogen regulation protein NR(I); Provisional


Pssm-ID: 182842 [Multi-domain]  Cd Length: 469  Bit Score: 33.31  E-value: 7.06e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 495113484  37 VEKPLLDVVMTRAEGNQSKAAQWLGLNRNTLRKKLVE 73
Cdd:PRK10923 429 LERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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