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Conserved domains on  [gi|495140663|ref|WP_007865470|]
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fimbrial protein [Cronobacter sakazakii]

Protein Classification

fimbrial protein( domain architecture ID 10007530)

fimbrial protein similar to Escherichia coli fimbrial adapter PapF, which is required for the correct presentation of the PapG adhesin at the distal end of the tip fibrillum

Gene Ontology:  GO:0009289|GO:0007155
PubMed:  1670938|22411982|2890081

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-176 2.72e-32

Pilin (type 1 fimbrial protein) [Cell motility];


:

Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 113.60  E-value: 2.72e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCALALglISGYASAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCP 80
Cdd:COG3539    1 MKKLLLALLLALA--LSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  81 AAIT-KVAAHFEALDstgfDPVTGNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTALMRYIGGYYATAA 159
Cdd:COG3539   79 AGTSnSVKVTFTGTA----DSANPGLLANTGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATGA 154

                        170
                 ....*....|....*...
gi 495140663 160 T-EAGDVTAKVNYTLSYP 176
Cdd:COG3539  155 TvTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-176 2.72e-32

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 113.60  E-value: 2.72e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCALALglISGYASAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCP 80
Cdd:COG3539    1 MKKLLLALLLALA--LSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  81 AAIT-KVAAHFEALDstgfDPVTGNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTALMRYIGGYYATAA 159
Cdd:COG3539   79 AGTSnSVKVTFTGTA----DSANPGLLANTGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATGA 154

                        170
                 ....*....|....*...
gi 495140663 160 T-EAGDVTAKVNYTLSYP 176
Cdd:COG3539  155 TvTAGSFNATATFTIDYQ 172
lpfA PRK15289
fimbrial protein; Provisional
 10-175 4.59e-17

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 74.61  E-value: 4.59e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  10 ALALGLISGYAsAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCPAAITKVAAH 89
Cdd:PRK15289  11 TLASLMLAGHA-LAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQAAVR 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  90 FEALDSTGFD-------PVT----GNLTNAAATGGAKNVEVRLYN-TDSSVIAVGETGAAFDVQSDQTALMRYIGGYYAT 157
Cdd:PRK15289  90 FDGTEAPGGDgdlkvgtPLTagnpGDFTGTGQAIAATGVGIRIFNqSDNSQVKLYNDSAYTAIDAEGKAEMKFIARYVAT 169

                        170
                 ....*....|....*....
gi 495140663 158 AAT-EAGDVTAKVNYTLSY 175
Cdd:PRK15289 170 NATvTAGTANADSQFTVEY 188
FimA pfam16970
Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins ...
 52-176 2.03e-14

Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.


Pssm-ID: 339870  Cd Length: 145  Bit Score: 66.67  E-value: 2.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   52 LPTISTQTLAKAGDEAGSTTFTIKAVSCPAAI---TKVAAHFEALDSTGFdpVTGNLTNAAATGGAKNVEVRLYNTDS-- 126
Cdd:pfam16970   1 LPTISNKALADPGETAGGTPFDIKLTECPQALdgaGHVGAFFEPGGSTDF--TSGNLFAIAADNAAGDEQIPLLKADGtq 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495140663  127 -----SVIAVGETGAAFDVQ----------SDQTALMRYIGGYYATAATE--AGDVTAKVNYTLSYP 176
Cdd:pfam16970  79 anldgSAIFLGKDFAAQAAHtflvsetaggDGYGATLRYLACYIASGAGSivAGNLKSQVGFSIAYE 145
 
Name Accession Description Interval E-value
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-176 2.72e-32

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 113.60  E-value: 2.72e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCALALglISGYASAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCP 80
Cdd:COG3539    1 MKKLLLALLLALA--LSAAAAAAADGTVNFTGTVVAPTCTINTGSKDQTVDLGTVSTSDLNGVGSTSGPKPFSIKLTNCD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  81 AAIT-KVAAHFEALDstgfDPVTGNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTALMRYIGGYYATAA 159
Cdd:COG3539   79 AGTSnSVKVTFTGTA----DSANPGLLANTGSGGASGVGIQLLDSDGTPIPLGTPSSAVTLTSNGSATLPFYARYVATGA 154

                        170
                 ....*....|....*...
gi 495140663 160 T-EAGDVTAKVNYTLSYP 176
Cdd:COG3539  155 TvTAGSFNATATFTIDYQ 172
lpfA PRK15289
fimbrial protein; Provisional
 10-175 4.59e-17

fimbrial protein; Provisional


Pssm-ID: 185189  Cd Length: 190  Bit Score: 74.61  E-value: 4.59e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  10 ALALGLISGYAsAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCPAAITKVAAH 89
Cdd:PRK15289  11 TLASLMLAGHA-LAEDGVVHFVGEIVDTTCEVTSDTADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQAAVR 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  90 FEALDSTGFD-------PVT----GNLTNAAATGGAKNVEVRLYN-TDSSVIAVGETGAAFDVQSDQTALMRYIGGYYAT 157
Cdd:PRK15289  90 FDGTEAPGGDgdlkvgtPLTagnpGDFTGTGQAIAATGVGIRIFNqSDNSQVKLYNDSAYTAIDAEGKAEMKFIARYVAT 169

                        170
                 ....*....|....*....
gi 495140663 158 AAT-EAGDVTAKVNYTLSY 175
Cdd:PRK15289 170 NATvTAGTANADSQFTVEY 188
FimA pfam16970
Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins ...
 52-176 2.03e-14

Type-1 fimbrial protein, A; FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.


Pssm-ID: 339870  Cd Length: 145  Bit Score: 66.67  E-value: 2.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   52 LPTISTQTLAKAGDEAGSTTFTIKAVSCPAAI---TKVAAHFEALDSTGFdpVTGNLTNAAATGGAKNVEVRLYNTDS-- 126
Cdd:pfam16970   1 LPTISNKALADPGETAGGTPFDIKLTECPQALdgaGHVGAFFEPGGSTDF--TSGNLFAIAADNAAGDEQIPLLKADGtq 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495140663  127 -----SVIAVGETGAAFDVQ----------SDQTALMRYIGGYYATAATE--AGDVTAKVNYTLSYP 176
Cdd:pfam16970  79 anldgSAIFLGKDFAAQAAHtflvsetaggDGYGATLRYLACYIASGAGSivAGNLKSQVGFSIAYE 145
PRK09934 PRK09934
fimbriae assembly protein;
1-171 3.46e-13

fimbriae assembly protein;


Pssm-ID: 182153 [Multi-domain]  Cd Length: 171  Bit Score: 64.14  E-value: 3.46e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCALALGLISGYAsAASQGTVTFN--GKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVS 78
Cdd:PRK09934   1 MRRVFFACFCGLLWSPLSWA-ADPLGEINIElhGNVVDFTCTVNTADSDKTVDLGTWPTKQLLNAGDTTQPVPFSLKLEG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  79 CP---AAITkvaahfealdSTGFDPVTGNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTALMRYIGGYY 155
Cdd:PRK09934  80 CPpgsASIT----------FTGTPASDTNLLALDDPAMAQTVAIEIRDSDRSRLALGQASPTVEVDANGNATLNFYANYI 149

                        170       180
                 ....*....|....*....|.
gi 495140663 156 ATA-----ATEAGDVTAKVNY 171
Cdd:PRK09934 150 ALAdgvqpGVAKADATFMINY 170
PRK15209 PRK15209
long polar fimbrial protein LpfA; Provisional
 1-175 3.08e-12

long polar fimbrial protein LpfA; Provisional


Pssm-ID: 185131 [Multi-domain]  Cd Length: 174  Bit Score: 61.53  E-value: 3.08e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCALALGLISGYASAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCP 80
Cdd:PRK15209   1 MKKVVFALSALALTSTSVFAAESGDGTVKFTGEIVDAPCVVSTDSQNQEVVLGQVKKSVFKAIGDKSSAKPFQIKLEDCD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  81 -AAITKVAAHFEALDSTGFDPVTGNLTNAaatGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTALMrYIGGYYAT-A 158
Cdd:PRK15209  81 iTTNKKVNVSFNGVGDADDSTLVSVSTEA---GAATGVGIGIYDNANTLVELNTGKSTTTLAAGQTVLY-FTANYVSTkD 156

                        170
                 ....*....|....*..
gi 495140663 159 ATEAGDVTAKVNYTLSY 175
Cdd:PRK15209 157 TVTTGYGNAEVDFNLSY 173
PRK15187 PRK15187
fimbrial protein BcfA; Provisional
 21-175 2.58e-10

fimbrial protein BcfA; Provisional


Pssm-ID: 185109  Cd Length: 180  Bit Score: 56.37  E-value: 2.58e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  21 SAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTT-FTIKAVSCPAAITKVAAHFEALDSTGFD 99
Cdd:PRK15187  27 TTVTGGTVNFVGQVVDAACSVSADSVDQTVTLGQVRASKLTEAGMVANQKEdFTIKLEDCDTQTSQNAAVIFNGQQDANQ 106

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495140663 100 PvtGNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTALMRYIgGYYATAATEAGDVTAKVNYTLSY 175
Cdd:PRK15187 107 P--GSLANTAGAGSATNVALQLYGPDGQALNIGESSSTVTLNDGENVIPLSV-DYIATGTATAGNVTATATFSMVY 179
PRK15296 PRK15296
fimbrial protein SthA;
22-175 1.42e-09

fimbrial protein SthA;


Pssm-ID: 185196  Cd Length: 181  Bit Score: 54.33  E-value: 1.42e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  22 AASQGTVTFNGKLIAETCEIDTN-DVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCPAAITKV--AAHFEALDST-G 97
Cdd:PRK15296  20 VFAQNTITFNGKIYDQACTVQVNgSTDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAGTGVptQAMFRFHGATdD 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  98 FDPVTGNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSD-QTALMRYIGGYYA--TAATEAGDVTAKVNYTLS 174
Cdd:PRK15296 100 SNPTYFKNADEGSETGAAGVGISIQNASHSDVTDNTDDAAVNLPTDgSTADFTYYAAMANdgSATVTGGDVSTQVTYTVS 179


                 .
gi 495140663 175 Y 175
Cdd:PRK15296 180 Y 180
PRK15293 PRK15293
fimbrial protein SthD;
11-176 8.09e-09

fimbrial protein SthD;


Pssm-ID: 185193  Cd Length: 185  Bit Score: 52.37  E-value: 8.09e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  11 LALGLISGYASAASQGTVTFN--GKLIAETCEIDTNDvdkTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCPAAITKVAA 88
Cdd:PRK15293  18 LALWSPSISAAYNTADAVDINvtGLIYADPCTVTVPD---TLSLGQYARADIAVAGGNTATIPFTIKMTNCPATTTKAAI 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  89 HFEALDSTGFDPVTGNLTNAAATgGAKNVEVRLYNTDSSVIAVGETGAAF--DVQSDQTALMRYIGG--YYATAATEAGD 164
Cdd:PRK15293  95 SFNGVPYPDPNYASAIYANSAAN-PAQDLGLQLFNLDGKSLVNLANNVTYtvDINSNTHEANLPVAArmYTPYGKVTAGD 173

                        170
                 ....*....|..
gi 495140663 165 VTAKVNYTLSYP 176
Cdd:PRK15293 174 FTSVVTITIAWQ 185
Fimbrial pfam00419
Fimbrial protein;
28-176 2.70e-07

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 47.82  E-value: 2.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   28 VTFNGKL--IAETCEIDTNDVDkTVTLPTISTQTLAKAGDEAGSTTFTIKaVSCPAAITKVAAhFEALDSTGFDPVTGNL 105
Cdd:pfam00419   1 INFTGTVtrVPATCKITAGTPI-EVDFGQIPVNELNAGGEGSRQKPFSIT-LECSSGSSAVKV-TVGLFGTADASSPNLL 77

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495140663  106 TNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQTA--LMRYIGGYYATAA--TEAGDVTAKVNYTLSYP 176
Cdd:pfam00419  78 LTGNGAGAATGVGIRLYDANGGALPPNNGTSSIPVSATAAVatGITFTASLVATTGgtPTAGDFNATATIVVDYQ 152
PRK15194 PRK15194
type 1 fimbrial protein subunit FimA;
3-175 6.95e-07

type 1 fimbrial protein subunit FimA;


Pssm-ID: 237920  Cd Length: 185  Bit Score: 47.26  E-value: 6.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   3 KLRFAYCALA-LGLISGYASAA-------SQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTI 74
Cdd:PRK15194   2 KLRFISSAIAsLLFVAGAAYAAdptpvsvDGGTIHFEGELVNAACSVNTDSADQTVTLGQYRTAIFTAVGNTTALIPFTI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  75 KAVSCPAAITKVAAHFEALDSTGFDPVTGNLTNAAATGGAKNVEVR-LYNTDSSVIAVGETGAAFDVQSDQTALMRYIGG 153
Cdd:PRK15194  82 QLNDCDPVVAATAAVAFSGQADATNDNLLAVASSTNTTTATGVGIEiLDNTSSILKPDGATFSANQNLIEGTNTLHFSAR 161

                        170       180
                 ....*....|....*....|...
gi 495140663 154 YYATAA-TEAGDVTAKVNYTLSY 175
Cdd:PRK15194 162 YKATGTsASAGQANADATFIMKY 184
PRK15307 PRK15307
major fimbrial protein StkA; Provisional
 7-175 3.81e-06

major fimbrial protein StkA; Provisional


Pssm-ID: 185207  Cd Length: 201  Bit Score: 45.03  E-value: 3.81e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   7 AYCALALGLISGYASAASQGTVTFNGKLIAETCEIDTND------VDKTVTLPTISTQTLAKAGDE---AGSTTFTIKAV 77
Cdd:PRK15307  10 AAVAMTLSASSAMAADPDTGTITFHGLVTNNTCNISLDNkidqdgNDFDITLPTVFVKDFATALGVnstLGEKQFTLNLS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  78 SCPAAITKVA-AHFEALDSTGFDPVTGNLTNAAATGGAKNVEVRLYN---TDSSVIAVGETG--AAFDVQSDQTALMRYI 151
Cdd:PRK15307  90 ECDNATLKDAsAQFNSWGGSSATSGGLLVPPANLQGSATNVNLVLANngnTATDLIKIDQPNntQKATISTDGTGDLFYR 169

                        170       180       190
                 ....*....|....*....|....*....|.
gi 495140663 152 GGYYA-------TAATEAGDVTAKVNYTLSY 175
Cdd:PRK15307 170 VAYTQgqkwnadTSPVTSGTVQAQVAFTMIY 200
PRK15262 PRK15262
putative fimbrial protein StaF; Provisional
 1-127 8.67e-06

putative fimbrial protein StaF; Provisional


Pssm-ID: 237933  Cd Length: 197  Bit Score: 43.91  E-value: 8.67e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCaLALGLISGYASAA--SQGTVTFNGKLIAETCEIDTNDvDKTVTLPTIS----TQTLAKAGDEAGSTTFTI 74
Cdd:PRK15262   2 QRKLMKKII-LFLGLLFALTSPPayAGQDVDLTANIKNSTCQSGISN-NGNVDLGTVGvgyfADNVTAETYYPGGKEFTI 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495140663  75 KAVSCPAAITKV---AAHFEALDSTGFDPvTGN---LTNAAATGGAKNVEVRLYNTDSS 127
Cdd:PRK15262  80 TVVDCALQGTGSvlnQLHFDFRPQSGVMA-TGSqqiFANEAVAGGAKNVGVVIFSIQDP 137
PRK15210 PRK15210
fimbrial protein;
26-175 1.14e-05

fimbrial protein;


Pssm-ID: 185132  Cd Length: 194  Bit Score: 43.92  E-value: 1.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  26 GTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCP------------AAITKVAAHFEAL 93
Cdd:PRK15210  35 GKILFTGTITNSPCDIAPGDDAITVPFGQISYRKLNTADATTESKPFTIHLQNCAfdpnipdtagsaGKMSKVTVSFSGT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  94 DSTGFDPVTgnltnaaATGGAKNVEVRLYNTDSSVIAVGET----GAAFDVQSDQTALMRYIGGYYATAATEAGDVTAKV 169
Cdd:PRK15210 115 ANTSKKAYT-------TSGSAQHVGVQLLKSDNTSIIEPNTpmpdGDAQQLQAGNNELNFFARLIALDNGVTPGDFNASV 187


                 ....*.
gi 495140663 170 NYTLSY 175
Cdd:PRK15210 188 TYTLKY 193
PRK09733 PRK09733
fimbrial-like protein;
10-175 3.39e-04

fimbrial-like protein;


Pssm-ID: 182053  Cd Length: 181  Bit Score: 39.55  E-value: 3.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  10 ALALGLISGYASA-ASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTIStQTLAKAGDEAGSTTFTIKAVSC-----PAAI 83
Cdd:PRK09733   9 AGVAMILSNNVFAdEGHGIVKFKGEVISAPCSIKPGDEDLTVNLGEVA-DTVLKSDQKSLAEPFTIHLQDCmlsqgGTTY 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  84 TKVAAHFEALDSTGFDPVTGNLTNAAATGGAKNVEVRLYNTDSSVIAVGE-TGAAFDVQSDQTALMRYIGGYYATAATEA 162
Cdd:PRK09733  88 SKAKVTFTTANTMTGQSDLLKNTKETEIGGATGVGVRILDSQSGEVTLGTpVVITFNNTNSYQELNFKARMESPSKDATP 167

                        170
                 ....*....|...
gi 495140663 163 GDVTAKVNYTLSY 175
Cdd:PRK09733 168 GNVYAQADYKIAY 180
PRK15191 PRK15191
fimbrial protein BcfF; Provisional
 15-175 9.71e-04

fimbrial protein BcfF; Provisional


Pssm-ID: 185113 [Multi-domain]  Cd Length: 172  Bit Score: 38.16  E-value: 9.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  15 LISGYASAASQGTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVSCPAAITKVAAHFE-AL 93
Cdd:PRK15191  12 LLAASGVQAHDGRVYVSGTITDNTCSLSPGSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASGVTVSFSgAA 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  94 DSTGFDPvtgnLTNAAATGGAKNVEVRLYNTDSSVIAVGETGAAFDVQSDQ-TALMRYIGGYYATAATEA-GDVTAKVNY 171
Cdd:PRK15191  92 DSRNTDL----LALTAGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQaSAHLQFYARYLADGGAVTpGDANASATF 167


                 ....
gi 495140663 172 TLSY 175
Cdd:PRK15191 168 ILAY 171
PRK15190 PRK15190
fimbrial protein BcfE; Provisional
 1-175 2.35e-03

fimbrial protein BcfE; Provisional


Pssm-ID: 185112  Cd Length: 181  Bit Score: 36.98  E-value: 2.35e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   1 MRKLRFAYCALALGLISGYASAASQ--GTVTFNGKLIAETCEIDTNDVDKTVTLPTISTQTLAKAGDEAGSTTFTIKAVS 78
Cdd:PRK15190   1 MNRSHCALFAMGLMLCPQINASADDlaYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  79 CPAAITKVAAHFEAlDSTGFDPVTGNLTNAAATGG---AKNVEVRLYNTDSSVIAVGETGA-AFDVQSDQTALMRYIGGY 154
Cdd:PRK15190  81 CSRGIAGAKIWFTG-EPDPDNPALLAITDTGMGSGnmlASGVGVEILNDDQDTISINNADSvVYPLKAGRNTLSFYIRYK 159

                        170       180
                 ....*....|....*....|.
gi 495140663 155 YATAATEAGDVTAKVNYTLSY 175
Cdd:PRK15190 160 STRPTVTSGNATAVMYFDMQY 180
PRK15300 PRK15300
fimbrial protein StiA; Provisional
 3-175 4.36e-03

fimbrial protein StiA; Provisional


Pssm-ID: 185200  Cd Length: 179  Bit Score: 36.23  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663   3 KLRFAYCALALGLIS----GYASAASQGTVTFNGKLIAETCEIDTNDVDktVTLPTISTQTLAKAGDEAGSTTFTIKAVS 78
Cdd:PRK15300   2 KLSLKTLTVALAAITlspaALADTAKDGTVHITGLIKQNACTVKTDSVE--VTLQEEFASLFTAAGQTAGDTDFTIELEN 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495140663  79 CPAAI-TKVAAHFEA-LDSTgfdpvtgNLTNAAATGGAKNVEVRLYNTDSSVIAVGETGA-----AFDVQSDQTAL-MRY 150
Cdd:PRK15300  80 CDANVySSVQARFEGtLDGT-------DATILKNEDDAENIGVQILDKTSTPMTFNDLQAwsaavALPTAEGVTELsMPF 152

                        170       180
                 ....*....|....*....|....*.
gi 495140663 151 IGGYYATAA-TEAGDVTAKVNYTLSY 175
Cdd:PRK15300 153 TARYIATAVpVKSGTVDATATFYLQY 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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