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Conserved domains on  [gi|495150171|ref|WP_007874977|]
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MULTISPECIES: flagellar biosynthetic protein FliO [Brucella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliO super family cl42107
Flagellar biogenesis protein FliO [Cell motility];
12-83 6.56e-07

Flagellar biogenesis protein FliO [Cell motility];


The actual alignment was detected with superfamily member COG3190:

Pssm-ID: 442423  Cd Length: 122  Bit Score: 48.05  E-value: 6.56e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495150171  12 SAANIVGFILIFAIILGGIFVVLSIIRRFGGgtfatngRTGRQPRLSVMDAAAVDSRRKLVLIRRDDVEHLL 83
Cdd:COG3190   14 SGGSLLQVLLALLLVLALILGLAWLLRRLGG-------RGGGGGALRVVASLSLGPRERLVLVEVGGRQLLL 78
 
Name Accession Description Interval E-value
FliO COG3190
Flagellar biogenesis protein FliO [Cell motility];
12-83 6.56e-07

Flagellar biogenesis protein FliO [Cell motility];


Pssm-ID: 442423  Cd Length: 122  Bit Score: 48.05  E-value: 6.56e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495150171  12 SAANIVGFILIFAIILGGIFVVLSIIRRFGGgtfatngRTGRQPRLSVMDAAAVDSRRKLVLIRRDDVEHLL 83
Cdd:COG3190   14 SGGSLLQVLLALLLVLALILGLAWLLRRLGG-------RGGGGGALRVVASLSLGPRERLVLVEVGGRQLLL 78
 
Name Accession Description Interval E-value
FliO COG3190
Flagellar biogenesis protein FliO [Cell motility];
12-83 6.56e-07

Flagellar biogenesis protein FliO [Cell motility];


Pssm-ID: 442423  Cd Length: 122  Bit Score: 48.05  E-value: 6.56e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495150171  12 SAANIVGFILIFAIILGGIFVVLSIIRRFGGgtfatngRTGRQPRLSVMDAAAVDSRRKLVLIRRDDVEHLL 83
Cdd:COG3190   14 SGGSLLQVLLALLLVLALILGLAWLLRRLGG-------RGGGGGALRVVASLSLGPRERLVLVEVGGRQLLL 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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