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Conserved domains on  [gi|495163149|ref|WP_007887948|]
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pyrroloquinoline quinone biosynthesis peptide chaperone PqqD [Cronobacter sakazakii]

Protein Classification

pyrroloquinoline quinone biosynthesis protein PqqD( domain architecture ID 10011743)

pyrroloquinoline quinone biosynthesis protein PqqD is involved in the biosynthesis of pyrroloquinoline quinone (PQQ)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
5-88 1.68e-42

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


:

Pssm-ID: 179362  Cd Length: 88  Bit Score: 133.54  E-value: 1.68e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495163149  5 RHHIPQFRRGYRLQWEEAQNTHVILYPEGMAKLNESAAAILQLVDGQQTAGAIIDTLEARFPEAGPLTDDVLGFLGLAYQ 84
Cdd:PRK02079  2 RNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARA 81


                ....
gi 495163149 85 QKWV 88
Cdd:PRK02079 82 KHWI 85
 
Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
5-88 1.68e-42

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


Pssm-ID: 179362  Cd Length: 88  Bit Score: 133.54  E-value: 1.68e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495163149  5 RHHIPQFRRGYRLQWEEAQNTHVILYPEGMAKLNESAAAILQLVDGQQTAGAIIDTLEARFPEAGPLTDDVLGFLGLAYQ 84
Cdd:PRK02079  2 RNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARA 81


                ....
gi 495163149 85 QKWV 88
Cdd:PRK02079 82 KHWI 85
PQQ_PqqD TIGR03859
coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the ...
 9-88 1.38e-34

coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274818  Cd Length: 81  Bit Score: 113.17  E-value: 1.38e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495163149   9 PQFRRGYRLQWEEAQNTHVILYPEGMAKLNESAAAILQLVDGQQTAGAIIDTLEARFPEAGPLTDDVLGFLGLAYQQKWV 88
Cdd:TIGR03859  1 PALRRGYRLQWERAQDCWVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFLAVARAKHWL 80
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 27-88 9.00e-12

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 54.79  E-value: 9.00e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495163149  27 VILYPEG--MAKLNESAAAILQLVDGQQTAGAIIDTLEARFP-EAGPLTDDVLGFLGLAYQQKWV 88
Cdd:pfam05402  1 VLLDPETgkYISLNETGAFIWELLDGRTTVEEIVAALAEEYDvDEEEAEADVEAFLEQLREAGLI 65
 
Name Accession Description Interval E-value
PRK02079 PRK02079
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;
5-88 1.68e-42

pyrroloquinoline quinone biosynthesis peptide chaperone PqqD;


Pssm-ID: 179362  Cd Length: 88  Bit Score: 133.54  E-value: 1.68e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495163149  5 RHHIPQFRRGYRLQWEEAQNTHVILYPEGMAKLNESAAAILQLVDGQQTAGAIIDTLEARFPEAGPLTDDVLGFLGLAYQ 84
Cdd:PRK02079  2 RNQVPTLRPGYRFQWEPAQNCHVLLYPEGMIKLNESAGEILGLIDGKRTVAAIIAELQQQFPDVPGLDEDVLEFLEVARA 81


                ....
gi 495163149 85 QKWV 88
Cdd:PRK02079 82 KHWI 85
PQQ_PqqD TIGR03859
coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the ...
 9-88 1.38e-34

coenzyme PQQ biosynthesis protein PqqD; This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]


Pssm-ID: 274818  Cd Length: 81  Bit Score: 113.17  E-value: 1.38e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495163149   9 PQFRRGYRLQWEEAQNTHVILYPEGMAKLNESAAAILQLVDGQQTAGAIIDTLEARFPEAGPLTDDVLGFLGLAYQQKWV 88
Cdd:TIGR03859  1 PALRRGYRLQWERAQDCWVLLYPEGMVKLNDSAGEILELCDGKRSLAEIIQELAQRFPAAEEIEDDVIAFLAVARAKHWL 80
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 27-88 9.00e-12

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 54.79  E-value: 9.00e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495163149  27 VILYPEG--MAKLNESAAAILQLVDGQQTAGAIIDTLEARFP-EAGPLTDDVLGFLGLAYQQKWV 88
Cdd:pfam05402  1 VLLDPETgkYISLNETGAFIWELLDGRTTVEEIVAALAEEYDvDEEEAEADVEAFLEQLREAGLI 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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