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Conserved domains on  [gi|495189241|ref|WP_007914031|]
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ABC transporter permease [Ktedonobacter racemifer]

Protein Classification

ABC transporter permease( domain architecture ID 10003065)

ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of substrates including gylcine betaine, choline, and carnitine

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
5-199 2.71e-59

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 184.87  E-value: 2.71e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241   5 LPYMAQLTFQHLYLSFLGTLAGGLVGFLLATWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALY 84
Cdd:COG1174   13 RDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  85 SILPVLQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRG 164
Cdd:COG1174   93 ALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDG 172
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 495189241 165 LQTIDMPAIVTGAIPAALLAVLLEVGLSLVERRLS 199
Cdd:COG1174  173 LQLNNTALILAGAILVALLALLVDLLLALLERLLT 207
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
5-199 2.71e-59

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 184.87  E-value: 2.71e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241   5 LPYMAQLTFQHLYLSFLGTLAGGLVGFLLATWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALY 84
Cdd:COG1174   13 RDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  85 SILPVLQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRG 164
Cdd:COG1174   93 ALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDG 172
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 495189241 165 LQTIDMPAIVTGAIPAALLAVLLEVGLSLVERRLS 199
Cdd:COG1174  173 LQLNNTALILAGAILVALLALLVDLLLALLERLLT 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
26-200 1.17e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 1.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241   26 GGLVGFLLATWVRRRPRcaSVFIGLAEVIQTIPG-----IALLAFLLLAFGLGDTTLIVGLALYSILPVLQNTYEGLVGV 100
Cdd:pfam00528   1 GIPLGIIAALRRGRRLD--RLLRPLIDLLQALPSfvlaiLLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  101 DPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSG-GLGVVIYRGLQTIDMPAIVTGAIP 179
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWpGLGLLLIEAILGYDYPEIQGPVLA 158
                         170       180
                  ....*....|....*....|.
gi 495189241  180 AALLAVLLEVGLSLVERRLSK 200
Cdd:pfam00528 159 AALILLLLNLLVDILQRLLDP 179
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
28-188 1.94e-09

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 56.25  E-value: 1.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  28 LVGFLLATWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALYSILPVLQNTYEGLVGVDPVYLDI 107
Cdd:PRK10952 162 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241 108 GKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRGLQTIDMPAIVTGAIPAALLAVLL 187
Cdd:PRK10952 242 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 321

                 .
gi 495189241 188 E 188
Cdd:PRK10952 322 D 322
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
15-187 2.77e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 48.81  E-value: 2.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  15 HLYLSFLGTLAGGLVGFLLATW-VRRRPRCASVFIGLAEVIQTIP---------GIALLAFLLLAFGLGDTTLIVGLALY 84
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIIlARKRGKLDRLLRRIIDLLLSLPslvlglllvLLFGVLLGWGILPGLGLPALILALLL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  85 SILPVLQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRG 164
Cdd:cd06261   84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163
                        170       180
                 ....*....|....*....|...
gi 495189241 165 LQTIDMPAIVTGAIPAALLAVLL 187
Cdd:cd06261  164 LLIFAILFPGDLGVAAAVALILL 186
 
Name Accession Description Interval E-value
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
5-199 2.71e-59

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 184.87  E-value: 2.71e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241   5 LPYMAQLTFQHLYLSFLGTLAGGLVGFLLATWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALY 84
Cdd:COG1174   13 RDGILALLLEHLLLVLLALLIALLIAVPLGILITRRRRLAGLVLGVANILQTIPSLALLALLIPLLGIGPAPAIIALVLY 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  85 SILPVLQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRG 164
Cdd:COG1174   93 ALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGAGGLGDLIFDG 172
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 495189241 165 LQTIDMPAIVTGAIPAALLAVLLEVGLSLVERRLS 199
Cdd:COG1174  173 LQLNNTALILAGAILVALLALLVDLLLALLERLLT 207
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
16-200 6.72e-23

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 92.13  E-value: 6.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  16 LYLSFLGTLAGGLVGFLLATWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALYSILPVLQNTYE 95
Cdd:COG0600   67 LLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNTAA 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  96 GLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSG-GLGVVIYRGLQTIDMPAIV 174
Cdd:COG0600  147 GVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAWIGLVVAELLGASsGLGYLILDARQLLDTDLVF 226
                        170       180
                 ....*....|....*....|....*.
gi 495189241 175 TGAIPAALLAVLLEVGLSLVERRLSK 200
Cdd:COG0600  227 AAILVIGLLGLLLDLLLRLLERRLLR 252
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
26-200 1.17e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 55.38  E-value: 1.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241   26 GGLVGFLLATWVRRRPRcaSVFIGLAEVIQTIPG-----IALLAFLLLAFGLGDTTLIVGLALYSILPVLQNTYEGLVGV 100
Cdd:pfam00528   1 GIPLGIIAALRRGRRLD--RLLRPLIDLLQALPSfvlaiLLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  101 DPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSG-GLGVVIYRGLQTIDMPAIVTGAIP 179
Cdd:pfam00528  79 PSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWpGLGLLLIEAILGYDYPEIQGPVLA 158
                         170       180
                  ....*....|....*....|.
gi 495189241  180 AALLAVLLEVGLSLVERRLSK 200
Cdd:pfam00528 159 AALILLLLNLLVDILQRLLDP 179
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
28-188 1.94e-09

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 56.25  E-value: 1.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  28 LVGFLLATWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALYSILPVLQNTYEGLVGVDPVYLDI 107
Cdd:PRK10952 162 VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEA 241
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241 108 GKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRGLQTIDMPAIVTGAIPAALLAVLL 187
Cdd:PRK10952 242 SRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIIL 321

                 .
gi 495189241 188 E 188
Cdd:PRK10952 322 D 322
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
15-187 2.77e-07

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 48.81  E-value: 2.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  15 HLYLSFLGTLAGGLVGFLLATW-VRRRPRCASVFIGLAEVIQTIP---------GIALLAFLLLAFGLGDTTLIVGLALY 84
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIIlARKRGKLDRLLRRIIDLLLSLPslvlglllvLLFGVLLGWGILPGLGLPALILALLL 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  85 SILPVLQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYRG 164
Cdd:cd06261   84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163
                        170       180
                 ....*....|....*....|...
gi 495189241 165 LQTIDMPAIVTGAIPAALLAVLL 187
Cdd:cd06261  164 LLIFAILFPGDLGVAAAVALILL 186
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
13-196 4.77e-07

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 48.78  E-value: 4.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  13 FQHLYLS----FLGTLAGGLVGF---LLATWVRRRPRCASVFIglaEVIQTIPGIALLAFLLLAFGLGDTTLIVGLALYS 85
Cdd:PRK11365  59 WQHLAISswraLIGFSIGGSLGLilgLISGLSRWGERLLDTSI---QMLRNVPHLALIPLVILWFGIDESAKIFLVALGT 135
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  86 ILPVLQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVAL----VTAIGIATIGVFIGSGGLGVVI 161
Cdd:PRK11365 136 LFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALglmwLTLIVAETISANSGIGYLAMNA 215
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 495189241 162 YRGLQTidmPAIVTGAIPAALLAVLLEVGLSLVER 196
Cdd:PRK11365 216 REFLQT---DVVVVAIILYALLGKLADVSAQLLER 247
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
16-200 2.57e-06

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 47.08  E-value: 2.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  16 LYLSFLGTLAGGLVGFLLATWVRRRP-RCASVFIGLAEVIQTIPGI------ALLAFLLLAFGLGDTTLIVGLAlYSI-- 86
Cdd:COG1178  344 LLLALLAALLAVLLALLLAYLVRRRRgRLARLLDRLAMLPYAVPGIvlglglLLLFNRPLPLLLYGTLAILVLA-YVVrf 422
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  87 LPV-LQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGG---LGVVIY 162
Cdd:COG1178  423 LPFaLRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGfetLAVLIY 502
                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 495189241 163 RGLQTIDMPAivtGAIPAALLAVLLEVGLSLVERRLSK 200
Cdd:COG1178  503 QLASSGRYGE---AAALALLLVLVSLLPVLLLERLLGR 537
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
109-163 1.82e-03

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 37.79  E-value: 1.82e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 495189241 109 KGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGGLGVVIYR 163
Cdd:PRK10782 124 RAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQIGYQ 178
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
16-173 4.25e-03

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 37.01  E-value: 4.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  16 LYLSFLGTLAGGLVGFLLA-TWVRRRPRCASVFIGLAEVIQTIPGIALLAFLLLAFGLGD-----TTLIVGLALYSILPV 89
Cdd:COG1177   67 LLIALLSTLLATVLGTPAAlALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGlsgglWGLILAHVVFTLPFV 146
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495189241  90 LQNTYEGLVGVDPVYLDIGKGMGMTPGEIFRQIELPLAFPVILAGLRVALVTAIGIATIGVFIGSGG---LGVVIYRGLQ 166
Cdd:COG1177  147 VLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGvttLPVYIYSMIR 226

                 ....*..
gi 495189241 167 TIDMPAI 173
Cdd:COG1177  227 RGISPEI 233
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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