RsmE family RNA methyltransferase similar to 16S rRNA (uracil(1498)-N(3))-methyltransferase RsmE that specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA
16S rRNA U1498 N3-methylase RsmE [Translation, ribosomal structure and biogenesis]; 16S rRNA U1498 N3-methylase RsmE is part of the Pathway/BioSystem: 16S rRNA modification
:
Pssm-ID: 440995 [Multi-domain] Cd Length: 245 Bit Score: 333.66 E-value: 7.68e-117
16S rRNA U1498 N3-methylase RsmE [Translation, ribosomal structure and biogenesis]; 16S rRNA U1498 N3-methylase RsmE is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440995 [Multi-domain] Cd Length: 245 Bit Score: 333.66 E-value: 7.68e-117
RNA methyltransferase, RsmE family; Members of this protein family, previously called ...
6-239
8.57e-74
RNA methyltransferase, RsmE family; Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272873 [Multi-domain] Cd Length: 240 Bit Score: 224.19 E-value: 8.57e-74
RNA methyltransferase domain; RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Pssm-ID: 461315 Cd Length: 165 Bit Score: 211.65 E-value: 6.13e-70
SPOUT superfamily RNA methyltransferase RsmE-like; 16S rRNA m3U1498 methyltransferase RsmE modifies nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation. RsmE is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349957 Cd Length: 159 Bit Score: 204.32 E-value: 4.45e-67
16S rRNA U1498 N3-methylase RsmE [Translation, ribosomal structure and biogenesis]; 16S rRNA U1498 N3-methylase RsmE is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440995 [Multi-domain] Cd Length: 245 Bit Score: 333.66 E-value: 7.68e-117
RNA methyltransferase, RsmE family; Members of this protein family, previously called ...
6-239
8.57e-74
RNA methyltransferase, RsmE family; Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 272873 [Multi-domain] Cd Length: 240 Bit Score: 224.19 E-value: 8.57e-74
RNA methyltransferase domain; RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Pssm-ID: 461315 Cd Length: 165 Bit Score: 211.65 E-value: 6.13e-70
SPOUT superfamily RNA methyltransferase RsmE-like; 16S rRNA m3U1498 methyltransferase RsmE modifies nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation. RsmE is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349957 Cd Length: 159 Bit Score: 204.32 E-value: 4.45e-67
RNA methyltransferase PUA domain; RNA methyltransferases modify nucleotides during ribosomal RNA maturation in a site-specific manner. The Escherichia coli member is specific for U1498 methylation.
Pssm-ID: 466411 [Multi-domain] Cd Length: 48 Bit Score: 60.22 E-value: 1.61e-12
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ...
145-214
2.31e-03
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 37.24 E-value: 2.31e-03
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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specific hits meet or exceed a domain-specific e-value threshold
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and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
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