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Conserved domains on  [gi|495231461|ref|WP_007956232|]
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nucleoside triphosphate pyrophosphohydrolase [Pelosinus fermentans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
YabN COG3956
Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like ...
228-483 1.64e-151

Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain [General function prediction only];


:

Pssm-ID: 443156 [Multi-domain]  Cd Length: 268  Bit Score: 432.23  E-value: 1.64e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 228 KRFSLDPILDVMAKLRSNEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFT 307
Cdd:COG3956    7 PLYAFERLLEIMARLRDPDGCPWDREQTHESLRPYTIEEAYEVADAIERGDLDELKEELGDLLLQVVFHAQIAEEEGAFD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 308 MQQVIDGIAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGH---ERPSVLDGIPKGLPSLMRAYKLQAKAAKVGFD 384
Cdd:COG3956   87 FDDVIDGISEKLIRRHPHVFGDVEVEDAEEVLANWEKIKAQEKAEkgeGRKSVLDGVPRSLPALMRAYKLQKKAARVGFD 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 385 WDRIEPVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLK 464
Cdd:COG3956  167 WPDVEGVLDKVEEELAELKEALASGDQEAIEEELGDLLFALVNLARHLGIDPEEALRRANRKFERRFRYIEAAAAEQGKS 246
                        250
                 ....*....|....*....
gi 495231461 465 WENMSLKQLDFLWEEAKSN 483
Cdd:COG3956  247 LEDLSLEEMDALWQEAKKA 265
YabN_N_like cd11723
N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and ...
4-222 1.95e-106

N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and similar domains; This family includes the S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent tetrapyrrole methylase (TP-methylase) domain of Bacillus subtilis YabN, and similar domains. YabN is a fusion of an N-terminal TP-methylase and a C-terminal MazG-type nucleotide pyrophosphohydrolase domain. MazG-like NTP-PPases have been implicated in house-cleaning functions such as degrading abnormal (d)NTPs. TP-methylases use S-AdoMet in the methylation of diverse substrates. Most TP-methylase family members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis, other members like diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) act on other substrates. The specific function of YabN's TP-methylase domain is not known.


:

Pssm-ID: 381177  Cd Length: 218  Bit Score: 315.58  E-value: 1.95e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   4 ITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVTAMMERGIAFTSYDYVYEEKTSFKEVYETIAhECLRQAALGK 83
Cdd:cd11723    1 ITIVGLGPGDPDLLTLGALEALKSADKVYLRTARHPVVEELKEEGIEFESFDDLYEEAEDFEEVYEAIA-ERLLEAAEHG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  84 KVVYAVPGSPLVAEKTVMLIRQLAgEQGIAVRILPGMSFLEVLYTRLAIDPIEGITVLDAADLAAIPPELMTALVVTQVY 163
Cdd:cd11723   80 DVVYAVPGHPLVAERTVQLLLERA-EEGIEVEIIPGVSFLDAALAALGIDPIEGLQILDALDLDAEDLDPRLPLLITQVY 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495231461 164 NHYVASEAKLVLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRVQEIDHLTSVYVPR 222
Cdd:cd11723  159 NRLVASDVKLTLMEVYPDEHEVTVVRAAGLGDEKVEEVPLYELDRQEDIDHLTSLYVPP 217
 
Name Accession Description Interval E-value
YabN COG3956
Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like ...
228-483 1.64e-151

Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain [General function prediction only];


Pssm-ID: 443156 [Multi-domain]  Cd Length: 268  Bit Score: 432.23  E-value: 1.64e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 228 KRFSLDPILDVMAKLRSNEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFT 307
Cdd:COG3956    7 PLYAFERLLEIMARLRDPDGCPWDREQTHESLRPYTIEEAYEVADAIERGDLDELKEELGDLLLQVVFHAQIAEEEGAFD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 308 MQQVIDGIAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGH---ERPSVLDGIPKGLPSLMRAYKLQAKAAKVGFD 384
Cdd:COG3956   87 FDDVIDGISEKLIRRHPHVFGDVEVEDAEEVLANWEKIKAQEKAEkgeGRKSVLDGVPRSLPALMRAYKLQKKAARVGFD 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 385 WDRIEPVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLK 464
Cdd:COG3956  167 WPDVEGVLDKVEEELAELKEALASGDQEAIEEELGDLLFALVNLARHLGIDPEEALRRANRKFERRFRYIEAAAAEQGKS 246
                        250
                 ....*....|....*....
gi 495231461 465 WENMSLKQLDFLWEEAKSN 483
Cdd:COG3956  247 LEDLSLEEMDALWQEAKKA 265
mazG PRK09562
nucleoside triphosphate pyrophosphohydrolase; Reviewed
231-481 1.68e-131

nucleoside triphosphate pyrophosphohydrolase; Reviewed


Pssm-ID: 236569 [Multi-domain]  Cd Length: 262  Bit Score: 381.05  E-value: 1.68e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 231 SLDPILDVMAKLRS-NEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQ 309
Cdd:PRK09562   8 AIDRLLEIMARLRDpEGGCPWDKEQTFASLAPYTIEEAYEVVDAIERGDLDDLREELGDLLLQVVFHAQMAEEQGAFDFA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 310 QVIDGIAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGheRPSVLDGIPKGLPSLMRAYKLQAKAAKVGFDWDRIE 389
Cdd:PRK09562  88 DVVEAISDKLIRRHPHVFGDVEAESSEEVLANWEQIKAEERA--ESSVLDGIPRGLPALMRAYKIQKKAARVGFDWESLE 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 390 PVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLKWENMS 469
Cdd:PRK09562 166 PVLDKVEEEIDELKEALAQGDQAKIEEEFGDLLFALVNLARHLGIDPEAALRKANAKFERRFRAVEQLAAAQGKTLEDAS 245
                        250
                 ....*....|..
gi 495231461 470 LKQLDFLWEEAK 481
Cdd:PRK09562 246 LEEMDALWQEAK 257
YabN_N_like cd11723
N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and ...
4-222 1.95e-106

N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and similar domains; This family includes the S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent tetrapyrrole methylase (TP-methylase) domain of Bacillus subtilis YabN, and similar domains. YabN is a fusion of an N-terminal TP-methylase and a C-terminal MazG-type nucleotide pyrophosphohydrolase domain. MazG-like NTP-PPases have been implicated in house-cleaning functions such as degrading abnormal (d)NTPs. TP-methylases use S-AdoMet in the methylation of diverse substrates. Most TP-methylase family members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis, other members like diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) act on other substrates. The specific function of YabN's TP-methylase domain is not known.


Pssm-ID: 381177  Cd Length: 218  Bit Score: 315.58  E-value: 1.95e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   4 ITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVTAMMERGIAFTSYDYVYEEKTSFKEVYETIAhECLRQAALGK 83
Cdd:cd11723    1 ITIVGLGPGDPDLLTLGALEALKSADKVYLRTARHPVVEELKEEGIEFESFDDLYEEAEDFEEVYEAIA-ERLLEAAEHG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  84 KVVYAVPGSPLVAEKTVMLIRQLAgEQGIAVRILPGMSFLEVLYTRLAIDPIEGITVLDAADLAAIPPELMTALVVTQVY 163
Cdd:cd11723   80 DVVYAVPGHPLVAERTVQLLLERA-EEGIEVEIIPGVSFLDAALAALGIDPIEGLQILDALDLDAEDLDPRLPLLITQVY 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495231461 164 NHYVASEAKLVLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRVQEIDHLTSVYVPR 222
Cdd:cd11723  159 NRLVASDVKLTLMEVYPDEHEVTVVRAAGLGDEKVEEVPLYELDRQEDIDHLTSLYVPP 217
mazG TIGR00444
MazG family protein; This family of prokaryotic proteins has no known function. It includes ...
238-481 2.11e-98

MazG family protein; This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli. [Unknown function, General]


Pssm-ID: 273082 [Multi-domain]  Cd Length: 248  Bit Score: 296.35  E-value: 2.11e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  238 VMAKLRS-NEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQQVIDGIA 316
Cdd:TIGR00444   1 IIAQLRDpENGCPWDKKQTFQSLIPYTLEETYEVLEAIAREDFDDLREELGDLLLQVVFYAQMAQEEGYFDFDDVCAGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  317 EKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHG-HERPSVLDGIPKGLPSLMRAYKLQAKAAKVGFDWDRIEPVWDKI 395
Cdd:TIGR00444  81 EKLVRRHPHVFADVKAEDESEVLARWEQIKAEEKAqKAQTSALDDVPRTLPALMRAAKIQKRCAKVGFDWEDVSPVWDKV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  396 YEELEELKDACAQ---GQAiNMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLKWENMSLKQ 472
Cdd:TIGR00444 161 YEELDEVMYEARQavvEQN-KLEEEMGDLLFATVNLARHLKTDAEIALQKANEKFERRFREVERIVAARGLELTGVDLEE 239

                  ....*....
gi 495231461  473 LDFLWEEAK 481
Cdd:TIGR00444 240 MEELWQQVK 248
NTP-PPase_MazG_Cterm cd11529
Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG ...
366-481 3.80e-59

Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs'; MazG is a NTP-PPase that hydrolyzes all canonical NTPs into their corresponding nucleoside monophosphates and pyrophosphate. The prototype of this family is MazG proteins from Escherichia coli (EcMazG) that represents the most abundant form consisting two sequence-related domains in tandem, this family corresponding to the C-terminal MazG-like domain. EcMazG functions as a regulator of cellular response to starvation by lowering the cellular concentration of guanosine 3',5'-bispyrophosphate (ppGpp). EcMazG exists as a dimer. Each monomer contains two tandem MazG-like domains with similarly folded globular structures. However, only the C-terminal domain has well-ordered active sites and exhibits an NTPase activity responsible for the regulation of bacterial cell survival under nutritional stress. Divalent ions, such as Mg2+ or Mn2+, are required for activity, along with structural features such as EEXX(E/D) motifs and key basic catalytic residues. It has been shown that the C-terminus NTPase activity is responsible for regulation of bacterial cell survival under nutritional stress.


Pssm-ID: 212136  Cd Length: 116  Bit Score: 190.37  E-value: 3.80e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 366 PSLMRAYKLQAKAAKVGFDWDRIEPVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNN 445
Cdd:cd11529    1 PALMRAQKLQKRAAKVGFDWPDAEGVLDKVEEELAELKEALASGDKEEIEEELGDLLFSLVNLARFLGVDPEEALRRANR 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 495231461 446 KFRRRFLYIEKVMKEKKLKWENMSLKQLDFLWEEAK 481
Cdd:cd11529   81 KFERRFRYMEELAAEQGKDLEDLSLEELDALWEEAK 116
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
4-207 6.96e-30

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 115.90  E-value: 6.96e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461    4 ITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVtamMERGIAFTSYDYVYEEKTSFKEVYETIAHECLRQAALGK 83
Cdd:pfam00590   2 LYLVGVGPGDPDLLTLRALRALKEADVVLGDDSRALEI---LLDLLPEDLYFPMTEDKEPLEEAYEEIAEALAAALRAGK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   84 KVVYAVPGSPLVAEkTVMLIRQLAGEQGIAVRILPGMSFLEVLYTRLAIDPIEGITVLDAADLAAIPPE--------LMT 155
Cdd:pfam00590  79 DVARLVSGDPLVYG-TGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPGLARIelrllealLAN 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 495231461  156 ALVVTQVYNHYVASEAKLVLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMD 207
Cdd:pfam00590 158 GDTVVLLYGPRRLAELAELLLELYPDTTPVAVVERAGTPDEKVVRGTLGELA 209
MazG pfam03819
MazG nucleotide pyrophosphohydrolase domain; This domain is about 100 amino acid residues in ...
254-327 1.89e-27

MazG nucleotide pyrophosphohydrolase domain; This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in some proteins as well as associated with pfam00590. This domain is clearly related to pfam01503 another pyrophosphohydrolase involved in histidine biosynthesis. This family may be structurally related to the NUDIX domain pfam00293 (Bateman A pers. obs.).


Pssm-ID: 427525  Cd Length: 74  Bit Score: 104.60  E-value: 1.89e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495231461  254 QTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQQVIDGIAEKMIRRHPHVF 327
Cdd:pfam03819   1 QTHETLLPYLIEEVYEVAEAIEKEDLDNLEEELGDVLLQVLFHANIAEEEGGFDLEDVFQRILEKLIRRHPHVF 74
CobJ COG1010
Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of ...
1-229 1.79e-10

Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440634  Cd Length: 250  Bit Score: 61.24  E-value: 1.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   1 MGEITIVGLGPGSFGLITVETLELLKTAEKLllrtakhptvtammergIAFTSY-DYVyEEKTSFKEVYETI-------A 72
Cdd:COG1010    3 RGKLYVVGLGPGSAELMTPRARAALAEADVV-----------------VGYGTYlDLI-PPLLPGKEVHASGmreeverA 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  73 HECLRQAALGKKV---------VYAVPGspLVAEktvmLIRQLAGEQGIAVRILPgmsflevlytrlaidpieGITVLDA 143
Cdd:COG1010   65 REALELAAEGKTVavvssgdpgVYGMAG--LVLE----VLEEGGAWRDVEVEVVP------------------GITAAQA 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 144 A----------DLAAI-------PPELM--------TALVVTQVYN-------HYVAsEAKLVLMEYYPDDYEVIVVKNL 191
Cdd:COG1010  121 AaarlgaplghDFCVIslsdlltPWEVIekrlraaaEADFVIALYNprsrkrpWQLE-RALEILLEHRPPDTPVGIVRNA 199
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 495231461 192 GLPDEQLLTVPLFEMDrVQEIDHLTSVYVPRRSTAVKR 229
Cdd:COG1010  200 GRPDESVTVTTLGELD-PEEVDMLTTVIIGNSQTRVIG 236
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
4-223 5.53e-06

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 47.17  E-value: 5.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   4 ITIVGLGPGSFGLITVETLELLKTAEKLL-----LRTAKHPTvtammeRGIAFTSYDYVYEEKtsfkevyetiahECLRQ 78
Cdd:PRK05787   2 IYIVGIGPGDPEYLTLKALEAIRKADVVVgskrvLELFPELI------DGEAFVLTAGLRDLL------------EWLEL 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  79 AALGKKVVYAVPGSPLVAE-KTVMLIRQLAGEQgiaVRILPGMSFLEVLYTRLAIdPIEGITVLDA-------ADLAAIP 150
Cdd:PRK05787  64 AAKGKNVVVLSTGDPLFSGlGKLLKVRRAVAED---VEVIPGISSVQYAAARLGI-DMNDVVFTTShgrgpnfEELEDLL 139
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495231461 151 PELMTALVVTQVYNHyVASEAKLvLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRVQEIDhLTSVYVPRR 223
Cdd:PRK05787 140 KNGRKVIMLPDPRFG-PKEIAAE-LLERGKLERRIVVGENLSYPDERIHKLTLSEIEPLEFSD-MSVVVILDE 209
 
Name Accession Description Interval E-value
YabN COG3956
Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like ...
228-483 1.64e-151

Uncharacterized conserved protein YabN, contains tetrapyrrole methylase and MazG-like pyrophosphatase domain [General function prediction only];


Pssm-ID: 443156 [Multi-domain]  Cd Length: 268  Bit Score: 432.23  E-value: 1.64e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 228 KRFSLDPILDVMAKLRSNEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFT 307
Cdd:COG3956    7 PLYAFERLLEIMARLRDPDGCPWDREQTHESLRPYTIEEAYEVADAIERGDLDELKEELGDLLLQVVFHAQIAEEEGAFD 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 308 MQQVIDGIAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGH---ERPSVLDGIPKGLPSLMRAYKLQAKAAKVGFD 384
Cdd:COG3956   87 FDDVIDGISEKLIRRHPHVFGDVEVEDAEEVLANWEKIKAQEKAEkgeGRKSVLDGVPRSLPALMRAYKLQKKAARVGFD 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 385 WDRIEPVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLK 464
Cdd:COG3956  167 WPDVEGVLDKVEEELAELKEALASGDQEAIEEELGDLLFALVNLARHLGIDPEEALRRANRKFERRFRYIEAAAAEQGKS 246
                        250
                 ....*....|....*....
gi 495231461 465 WENMSLKQLDFLWEEAKSN 483
Cdd:COG3956  247 LEDLSLEEMDALWQEAKKA 265
mazG PRK09562
nucleoside triphosphate pyrophosphohydrolase; Reviewed
231-481 1.68e-131

nucleoside triphosphate pyrophosphohydrolase; Reviewed


Pssm-ID: 236569 [Multi-domain]  Cd Length: 262  Bit Score: 381.05  E-value: 1.68e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 231 SLDPILDVMAKLRS-NEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQ 309
Cdd:PRK09562   8 AIDRLLEIMARLRDpEGGCPWDKEQTFASLAPYTIEEAYEVVDAIERGDLDDLREELGDLLLQVVFHAQMAEEQGAFDFA 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 310 QVIDGIAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGheRPSVLDGIPKGLPSLMRAYKLQAKAAKVGFDWDRIE 389
Cdd:PRK09562  88 DVVEAISDKLIRRHPHVFGDVEAESSEEVLANWEQIKAEERA--ESSVLDGIPRGLPALMRAYKIQKKAARVGFDWESLE 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 390 PVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLKWENMS 469
Cdd:PRK09562 166 PVLDKVEEEIDELKEALAQGDQAKIEEEFGDLLFALVNLARHLGIDPEAALRKANAKFERRFRAVEQLAAAQGKTLEDAS 245
                        250
                 ....*....|..
gi 495231461 470 LKQLDFLWEEAK 481
Cdd:PRK09562 246 LEEMDALWQEAK 257
YabN_N_like cd11723
N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and ...
4-222 1.95e-106

N-terminal S-AdoMet-dependent tetrapyrrole methylase domain of Bacillus subtilis YabN and similar domains; This family includes the S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent tetrapyrrole methylase (TP-methylase) domain of Bacillus subtilis YabN, and similar domains. YabN is a fusion of an N-terminal TP-methylase and a C-terminal MazG-type nucleotide pyrophosphohydrolase domain. MazG-like NTP-PPases have been implicated in house-cleaning functions such as degrading abnormal (d)NTPs. TP-methylases use S-AdoMet in the methylation of diverse substrates. Most TP-methylase family members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis, other members like diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) act on other substrates. The specific function of YabN's TP-methylase domain is not known.


Pssm-ID: 381177  Cd Length: 218  Bit Score: 315.58  E-value: 1.95e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   4 ITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVTAMMERGIAFTSYDYVYEEKTSFKEVYETIAhECLRQAALGK 83
Cdd:cd11723    1 ITIVGLGPGDPDLLTLGALEALKSADKVYLRTARHPVVEELKEEGIEFESFDDLYEEAEDFEEVYEAIA-ERLLEAAEHG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  84 KVVYAVPGSPLVAEKTVMLIRQLAgEQGIAVRILPGMSFLEVLYTRLAIDPIEGITVLDAADLAAIPPELMTALVVTQVY 163
Cdd:cd11723   80 DVVYAVPGHPLVAERTVQLLLERA-EEGIEVEIIPGVSFLDAALAALGIDPIEGLQILDALDLDAEDLDPRLPLLITQVY 158
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495231461 164 NHYVASEAKLVLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRVQEIDHLTSVYVPR 222
Cdd:cd11723  159 NRLVASDVKLTLMEVYPDEHEVTVVRAAGLGDEKVEEVPLYELDRQEDIDHLTSLYVPP 217
mazG TIGR00444
MazG family protein; This family of prokaryotic proteins has no known function. It includes ...
238-481 2.11e-98

MazG family protein; This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli. [Unknown function, General]


Pssm-ID: 273082 [Multi-domain]  Cd Length: 248  Bit Score: 296.35  E-value: 2.11e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  238 VMAKLRS-NEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQQVIDGIA 316
Cdd:TIGR00444   1 IIAQLRDpENGCPWDKKQTFQSLIPYTLEETYEVLEAIAREDFDDLREELGDLLLQVVFYAQMAQEEGYFDFDDVCAGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  317 EKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHG-HERPSVLDGIPKGLPSLMRAYKLQAKAAKVGFDWDRIEPVWDKI 395
Cdd:TIGR00444  81 EKLVRRHPHVFADVKAEDESEVLARWEQIKAEEKAqKAQTSALDDVPRTLPALMRAAKIQKRCAKVGFDWEDVSPVWDKV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  396 YEELEELKDACAQ---GQAiNMEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRRFLYIEKVMKEKKLKWENMSLKQ 472
Cdd:TIGR00444 161 YEELDEVMYEARQavvEQN-KLEEEMGDLLFATVNLARHLKTDAEIALQKANEKFERRFREVERIVAARGLELTGVDLEE 239

                  ....*....
gi 495231461  473 LDFLWEEAK 481
Cdd:TIGR00444 240 MEELWQQVK 248
NTP-PPase_MazG_Cterm cd11529
Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG ...
366-481 3.80e-59

Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) C-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs'; MazG is a NTP-PPase that hydrolyzes all canonical NTPs into their corresponding nucleoside monophosphates and pyrophosphate. The prototype of this family is MazG proteins from Escherichia coli (EcMazG) that represents the most abundant form consisting two sequence-related domains in tandem, this family corresponding to the C-terminal MazG-like domain. EcMazG functions as a regulator of cellular response to starvation by lowering the cellular concentration of guanosine 3',5'-bispyrophosphate (ppGpp). EcMazG exists as a dimer. Each monomer contains two tandem MazG-like domains with similarly folded globular structures. However, only the C-terminal domain has well-ordered active sites and exhibits an NTPase activity responsible for the regulation of bacterial cell survival under nutritional stress. Divalent ions, such as Mg2+ or Mn2+, are required for activity, along with structural features such as EEXX(E/D) motifs and key basic catalytic residues. It has been shown that the C-terminus NTPase activity is responsible for regulation of bacterial cell survival under nutritional stress.


Pssm-ID: 212136  Cd Length: 116  Bit Score: 190.37  E-value: 3.80e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 366 PSLMRAYKLQAKAAKVGFDWDRIEPVWDKIYEELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEVALNTTNN 445
Cdd:cd11529    1 PALMRAQKLQKRAAKVGFDWPDAEGVLDKVEEELAELKEALASGDKEEIEEELGDLLFSLVNLARFLGVDPEEALRRANR 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 495231461 446 KFRRRFLYIEKVMKEKKLKWENMSLKQLDFLWEEAK 481
Cdd:cd11529   81 KFERRFRYMEELAAEQGKDLEDLSLEELDALWEEAK 116
PRK12334 PRK12334
nucleoside triphosphate pyrophosphohydrolase; Reviewed
238-450 2.20e-58

nucleoside triphosphate pyrophosphohydrolase; Reviewed


Pssm-ID: 237065 [Multi-domain]  Cd Length: 277  Bit Score: 194.12  E-value: 2.20e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 238 VMAKLRSNegCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEA--KVFTMQQVIDGI 315
Cdd:PRK12334  70 VMDRLRSP--GPWESEQTHRSLARYLLEETYELLDAIESGDRDELREELGDVLLQVLFHARIAEEApeDPFDIDDVAATL 147
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 316 AEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGheRPSVLDGIPKGLPSLMRAYKLQAKAAKVGFDWDRIEPVWDki 395
Cdd:PRK12334 148 VAKLVRRHPHVFADGEAISLEEQLAQWEARKAAEKA--RTSVLDGVPLGQPALALAAKVLSRARKAGLPVPLAPAEDS-- 223
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 495231461 396 yeeleelkdacaqgqainmEAELGDVIFSIVNLARFLKIDGEVALNTTNNKFRRR 450
Cdd:PRK12334 224 -------------------EDELGALLLALVAVAVAAGVDAEAALRAAVRDFRDR 259
NTP-PPase_MazG_Nterm cd11528
Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG ...
233-346 1.19e-57

Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) N-terminal tandem-domain of MazG proteins from Escherichia coli and bacterial homologs; MazG is a NTP-PPase that hydrolyzes all canonical NTPs into their corresponding nucleoside monophosphates and pyrophosphate. The prototype of this family is MazG proteins from Escherichia coli (EcMazG) that represents the most abundant form consisting two sequence-related domains in tandem, this family corresponding to the N-terminal MazG-like domain. EcMazG functions as a regulator of cellular response to starvation by lowering the cellular concentration of guanosine 3',5'-bispyrophosphate (ppGpp). EcMazG exists as a dimer; each monomer contains two tandem MazG-like domains with similarly folded globular structures. However, only the C-terminal domain has well-ordered active site and exhibits an NTPase activity responsible for the regulation of bacterial cell survival under nutritional stress. Divalent ions, such as Mg2+ or Mn2+, are required for activity; however, this domain does not exhibit an NTPase activity despite containing structural features such as the EEXX(E/D) motif and key basic catalytic residues responsible for nucleotide pyrophosphohydrolysis activity. It is suggested that the N-terminal domain of EcMazG might have a house-cleaning function by hydrolyzing noncanonical NTPs whose incorporation into the nascent DNA leads to increased mutagenesis and DNA damage.


Pssm-ID: 212135  Cd Length: 114  Bit Score: 186.18  E-value: 1.19e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 233 DPILDVMAKLRSNEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQQVI 312
Cdd:cd11528    1 ERLVEIVARLRGPGGCPWDREQTHESLRPYLLEEAYELVEAIEEGDPDNLREELGDVLLQVLFHAQIAEEEGAFDLDDVI 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 495231461 313 DGIAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIK 346
Cdd:cd11528   81 DGLTEKLIRRHPHVFGDEKAETAEEVLRNWEKIK 114
PRK12333 PRK12333
nucleoside triphosphate pyrophosphohydrolase; Reviewed
235-440 1.69e-54

nucleoside triphosphate pyrophosphohydrolase; Reviewed


Pssm-ID: 237064 [Multi-domain]  Cd Length: 204  Bit Score: 181.54  E-value: 1.69e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 235 ILDVMAKLRSNEGCVWDIEQTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQQVIDG 314
Cdd:PRK12333   4 LLEVMRRLRGPDGCPWDREQTHESLRPYLLEEAAEAVDALSEGDPQELAEELGDVLLQVAFHSVIAEEEGRFTYPDVERG 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 315 IAEKMIRRHPHVFGDTSVRDAGEVVLNWDAIKKQEHGHERPSVLDGIPKGLPSLMRAYKLQAKAAKVGFDWDRIEpvwdk 394
Cdd:PRK12333  84 IVEKLIRRHPHVFGDVQVSGPEEVVANWQAIKAAERGGGPRSAAERVPASLGALARAAELQKKLGREAGSREGVI----- 158
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 495231461 395 iyeeleelkdacaqgQAINmEAELGDVIFSIVNLARFLKIDGEVAL 440
Cdd:PRK12333 159 ---------------AALE-EGGVAEALWAVVAWARAEGIDPEIAL 188
TP_methylase pfam00590
Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of ...
4-207 6.96e-30

Tetrapyrrole (Corrin/Porphyrin) Methylases; This family uses S-AdoMet in the methylation of diverse substrates. This family includes a related group of bacterial proteins of unknown function. This family includes the methylase Dipthine synthase.


Pssm-ID: 425769 [Multi-domain]  Cd Length: 209  Bit Score: 115.90  E-value: 6.96e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461    4 ITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVtamMERGIAFTSYDYVYEEKTSFKEVYETIAHECLRQAALGK 83
Cdd:pfam00590   2 LYLVGVGPGDPDLLTLRALRALKEADVVLGDDSRALEI---LLDLLPEDLYFPMTEDKEPLEEAYEEIAEALAAALRAGK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   84 KVVYAVPGSPLVAEkTVMLIRQLAGEQGIAVRILPGMSFLEVLYTRLAIDPIEGITVLDAADLAAIPPE--------LMT 155
Cdd:pfam00590  79 DVARLVSGDPLVYG-TGSYLVEALRAAGIDVEVVPGVSSAQAAAARLGIPLTEGGEVLSVLFLPGLARIelrllealLAN 157
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 495231461  156 ALVVTQVYNHYVASEAKLVLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMD 207
Cdd:pfam00590 158 GDTVVLLYGPRRLAELAELLLELYPDTTPVAVVERAGTPDEKVVRGTLGELA 209
MazG pfam03819
MazG nucleotide pyrophosphohydrolase domain; This domain is about 100 amino acid residues in ...
254-327 1.89e-27

MazG nucleotide pyrophosphohydrolase domain; This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in some proteins as well as associated with pfam00590. This domain is clearly related to pfam01503 another pyrophosphohydrolase involved in histidine biosynthesis. This family may be structurally related to the NUDIX domain pfam00293 (Bateman A pers. obs.).


Pssm-ID: 427525  Cd Length: 74  Bit Score: 104.60  E-value: 1.89e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495231461  254 QTHSSLRRYIVEEVYEVLEAIDLQQGELLCEELGDLLLQIVFHARIAEEAKVFTMQQVIDGIAEKMIRRHPHVF 327
Cdd:pfam03819   1 QTHETLLPYLIEEVYEVAEAIEKEDLDNLEEELGDVLLQVLFHANIAEEEGGFDLEDVFQRILEKLIRRHPHVF 74
TP_methylase cd09815
S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet ...
7-221 1.49e-23

S-AdoMet-dependent tetrapyrrole methylases; This superfamily uses S-AdoMet (S-adenosyl-L-methionine or SAM) in the methylation of diverse substrates. Most members catalyze various methylation steps in cobalamin (vitamin B12) biosynthesis. There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. The enzymes involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Most of the enzymes are shared by both pathways and a few enzymes are pathway-specific. Diphthine synthase and ribosomal RNA small subunit methyltransferase I (RsmI) are two superfamily members that are not involved in cobalamin biosynthesis. Diphthine synthase participates in the posttranslational modification of a specific histidine residue in elongation factor 2 (EF-2) of eukaryotes and archaea to diphthamide. RsmI catalyzes the 2-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. Other superfamily members not involved in cobalamin biosynthesis include the N-terminal tetrapyrrole methylase domain of Bacillus subtilis YabN whose specific function is unknown, and Omphalotus olearius omphalotin methyltransferase which catalyzes the automethylation of its own C-terminus; this C terminus is subsequently released and macrocyclized to give Omphalotin A, a potent nematicide.


Pssm-ID: 381167 [Multi-domain]  Cd Length: 219  Bit Score: 98.62  E-value: 1.49e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   7 VGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVTAMMERGIAFTSYDYvyeeKTSFKEVYETIAHECLRQAALGKKVV 86
Cdd:cd09815    1 VGVGPGDPDLLTLRALEILRAADVVVAEDKDSKLLSLVLRAILKDGKRIY----DLHDPNVEEEMAELLLEEARQGKDVA 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  87 YAVPGSPLVAEkTVMLIRQLAGEQGIAVRILPGMSFLEVLYTRLAIDPIEGITVLDAADLAAIPPELMTA--------LV 158
Cdd:cd09815   77 FLSPGDPGVAG-TGAELVERAEREGVEVKVIPGVSAADAAAAALGIDLGESFLFVTASDLLENPRLLVLKalakerrhLV 155
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495231461 159 VTQVYnHYVASEAKLVLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMD--RVQEIDHLTSVYVP 221
Cdd:cd09815  156 LFLDG-HRFLKALERLLKELGEDDTPVVLVANAGSEGEVIRTGTVKELRaeRTERGKPLTTILVG 219
OphMA_like cd19916
tetrapyrrole methylase family protein similar to Omphalotus olearius omphalotin ...
2-221 2.41e-20

tetrapyrrole methylase family protein similar to Omphalotus olearius omphalotin methyltransferase (OphMA) and Dendrothele bispora dbOphMA; OphMA, is the precursor protein of the fungal cyclic peptide Omphalotin A. Omphalotin A is a potent nematicide, having 9 out of 12 of its residues methylated at the backbone amide. Omphalotin A derives from the C-terminus of OphMA (also known as OphA). OphMA catalyzes the automethylation of its own C-terminus using S-adenosyl methionine (SAM); this C terminus is subsequently released and macrocyclized by the protease OphP to give Omphalotin A.


Pssm-ID: 381179  Cd Length: 237  Bit Score: 89.85  E-value: 2.41e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   2 GEITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVTAMMERGIAFTSYDYVYEEKTSFKEVYETIAHECLRQAAL 81
Cdd:cd19916    1 GSLVVVGTGIKGIGHLTLEAESAIEQADKVFYLVADPLTEEWLRELNPNAEDLYDLYGEGKPRLDTYREMAERILEAVRA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  82 GKKVVYAVPGSPLV-AEKTVMLIRQLAGEqGIAVRILPGMSFLEVLYTRLAIDP-IEGITVLDAADLAAIPPELMT--AL 157
Cdd:cd19916   81 GKPVCAAFYGHPGVfVSPSHLAIRIARRE-GYRARMLPGISAEDCLFADLGIDPgRPGCQSYEATDFLLRRRPLDPsaHL 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495231461 158 VVTQV-------YNHYVASEAKL-----VLMEYYPDDYEVIVVKNLGLP--DEQLLTVPLFEMDRvQEIDHLTSVYVP 221
Cdd:cd19916  160 ILWQVgvvgdltFTRFGYDNRGLellveYLLKFYPPDHEVILYEAATYPgcEPRIERIPLSDLAE-AELTGISTLYIP 236
CobJ COG1010
Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of ...
1-229 1.79e-10

Precorrin-3B methylase [Coenzyme transport and metabolism]; Precorrin-3B methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 440634  Cd Length: 250  Bit Score: 61.24  E-value: 1.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   1 MGEITIVGLGPGSFGLITVETLELLKTAEKLllrtakhptvtammergIAFTSY-DYVyEEKTSFKEVYETI-------A 72
Cdd:COG1010    3 RGKLYVVGLGPGSAELMTPRARAALAEADVV-----------------VGYGTYlDLI-PPLLPGKEVHASGmreeverA 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  73 HECLRQAALGKKV---------VYAVPGspLVAEktvmLIRQLAGEQGIAVRILPgmsflevlytrlaidpieGITVLDA 143
Cdd:COG1010   65 REALELAAEGKTVavvssgdpgVYGMAG--LVLE----VLEEGGAWRDVEVEVVP------------------GITAAQA 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 144 A----------DLAAI-------PPELM--------TALVVTQVYN-------HYVAsEAKLVLMEYYPDDYEVIVVKNL 191
Cdd:COG1010  121 AaarlgaplghDFCVIslsdlltPWEVIekrlraaaEADFVIALYNprsrkrpWQLE-RALEILLEHRPPDTPVGIVRNA 199
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 495231461 192 GLPDEQLLTVPLFEMDrVQEIDHLTSVYVPRRSTAVKR 229
Cdd:COG1010  200 GRPDESVTVTTLGELD-PEEVDMLTTVIIGNSQTRVIG 236
Precorrin_3B_C17_MT cd11646
Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17) ...
4-229 2.13e-09

Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH); Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.


Pssm-ID: 381173 [Multi-domain]  Cd Length: 238  Bit Score: 57.81  E-value: 2.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   4 ITIVGLGPGSFGLITVETLELLKTAEKLllrtakhptvtammergIAFTSY-DYVyEEKTSFKEVYET-------IAHEC 75
Cdd:cd11646    1 LYVVGIGPGSADLMTPRAREALEEADVI-----------------VGYKTYlDLI-EDLLPGKEVISSgmgeeveRAREA 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  76 LRQAALGKKV---------VYAVPGsplvaektvmLIRQLAGEQG--IAVRILPGmsflevlytrlaidpiegITVLDAA 144
Cdd:cd11646   63 LELALEGKRValvssgdpgIYGMAG----------LVLELLDERWddIEVEVVPG------------------ITAALAA 114
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461 145 ----------DLAAI-------PPEL---------MTALVVTqVYN-------HYVAsEAKLVLMEYYPDDYEVIVVKNL 191
Cdd:cd11646  115 aallgaplghDFAVIslsdlltPWEViekrlraaaEADFVIA-LYNprskkrpWQLE-KALEILLEHRPPDTPVGIVRNA 192
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 495231461 192 GLPDEQLLTVPLFEMDrVQEIDHLTSVYVPRRSTAVKR 229
Cdd:cd11646  193 GREGEEVTITTLGELD-PEDVDMFTTVIIGNSQTYIIG 229
CobL COG2241
Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part ...
1-223 2.64e-08

Precorrin-6B methylase 1 [Coenzyme transport and metabolism]; Precorrin-6B methylase 1 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441842 [Multi-domain]  Cd Length: 207  Bit Score: 54.00  E-value: 2.64e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   1 MGEITIVGLGPGSFGLITVETLELLKTAEKLL-----LRTAKHPTvtammERGIAFTSydyvyeektSFKEVYETIahec 75
Cdd:COG2241    1 MPWLTVVGIGPGGPDGLTPAAREAIAEADVVVggkrhLELFPDLG-----AERIVWPS---------PLSELLEEL---- 62
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  76 lRQAALGKKVVYAVPGSPLVAEKTVMLIRQLAGEQgiaVRILPGMSFLEVLYTRLAIdPIEGITV--LDAADLAAIPPEL 153
Cdd:COG2241   63 -LALLRGRRVVVLASGDPLFYGIGATLARHLPAEE---VRVIPGISSLQLAAARLGW-PWQDAAVvsLHGRPLERLLPAL 137
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495231461 154 MTA---LVVTQVYN--HYVASEaklvLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRvQEIDHLTSVYVPRR 223
Cdd:COG2241  138 APGrrvLVLTDDGNtpAAIARL----LLERGFGDSRLTVLENLGGPDERITRGTAEELAD-ADFSDLNVVAIECR 207
Precorrin-6Y-MT cd11644
Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also ...
7-220 3.77e-07

Precorrin-6Y methyltransferase (also named CbiE); CbiE (precorrin-6Y methyltransferase, also known as cobalt-precorrin-7 C(5)-methyltransferase, also known as cobalt-precorrin-6Y C(5)-methyltransferase) catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. It participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. CbiE functions in the anaerobic pathway, it is a subunit of precorrin-6Y C5,15-methyltransferase, a bifunctional enzyme: cobalt-precorrin-7 C(5)-methyltransferase (CbiE)/cobalt-precorrin-6B C(15)-methyltransferase (decarboxylating) (CbiT), that catalyzes two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. CbiE and CbiT can be found fused (CbiET, also called CobL), or on separate protein chains (CbiE and CbiT). In the aerobic pathway, a single enzyme called CobL catalyzes the methylations at C-5 and C-15, and the decarboxylation of the C-12 acetate side chain of precorrin-6B.


Pssm-ID: 381171 [Multi-domain]  Cd Length: 198  Bit Score: 50.57  E-value: 3.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   7 VGLGPGSFGLITVETLELLKTAEKL-----LLRTAKHPTvtammERGIAFTSYDyvyeektsFKEVYETIAHEclrqaal 81
Cdd:cd11644    1 IGIGPGGPEYLTPEAREAIEEADVVigakrLLELFPDLG-----AEKIPLPSED--------IAELLEEIAEA------- 60
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  82 GKKVVYAVPGSPL---VAEKtvmLIRQLAGEQgiaVRILPGMSFLEVLYTRLAIdPIEGITVLDA--ADLAAIPPELMTA 156
Cdd:cd11644   61 GKRVVVLASGDPGfygIGKT---LLRRLGGEE---VEVIPGISSVQLAAARLGL-PWEDARLVSLhgRDLENLRRALRRG 133
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495231461 157 ---LVVTQvYNHYVASEAKLvLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRvQEIDHLTSVYV 220
Cdd:cd11644  134 rkvFVLTD-GKNTPAEIARL-LLERGLGDSRVTVGENLGYPDERITEGTAEELAE-EEFSDLNVVLI 197
PRK05787 PRK05787
cobalt-precorrin-7 (C(5))-methyltransferase;
4-223 5.53e-06

cobalt-precorrin-7 (C(5))-methyltransferase;


Pssm-ID: 235609 [Multi-domain]  Cd Length: 210  Bit Score: 47.17  E-value: 5.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   4 ITIVGLGPGSFGLITVETLELLKTAEKLL-----LRTAKHPTvtammeRGIAFTSYDYVYEEKtsfkevyetiahECLRQ 78
Cdd:PRK05787   2 IYIVGIGPGDPEYLTLKALEAIRKADVVVgskrvLELFPELI------DGEAFVLTAGLRDLL------------EWLEL 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  79 AALGKKVVYAVPGSPLVAE-KTVMLIRQLAGEQgiaVRILPGMSFLEVLYTRLAIdPIEGITVLDA-------ADLAAIP 150
Cdd:PRK05787  64 AAKGKNVVVLSTGDPLFSGlGKLLKVRRAVAED---VEVIPGISSVQYAAARLGI-DMNDVVFTTShgrgpnfEELEDLL 139
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495231461 151 PELMTALVVTQVYNHyVASEAKLvLMEYYPDDYEVIVVKNLGLPDEQLLTVPLFEMDRVQEIDhLTSVYVPRR 223
Cdd:PRK05787 140 KNGRKVIMLPDPRFG-PKEIAAE-LLERGKLERRIVVGENLSYPDERIHKLTLSEIEPLEFSD-MSVVVILDE 209
CobF COG2243
Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of ...
1-200 2.62e-05

Precorrin-2 methylase [Coenzyme transport and metabolism]; Precorrin-2 methylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441844 [Multi-domain]  Cd Length: 229  Bit Score: 45.47  E-value: 2.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   1 MGEITIVGLGPGSFGLITVETLELLKTAEKLLL-RTAKHPTVTAmmeRGIA---FTSYDYV---------YEEKTSFkev 67
Cdd:COG2243    2 MGKLYGVGVGPGDPELLTLKAVRALREADVIAYpAKGAGKASLA---REIVapyLPPARIVelvfpmttdYEALVAA--- 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  68 YETIAHECLRQAALGKKVVYAVPGSPLVAEKTVMLIRQLAgEQGIAVRILPG-MSFLeVLYTRLAIdPI----EGITVLD 142
Cdd:COG2243   76 WDEAAARIAEELEAGRDVAFLTEGDPSLYSTFMYLLERLR-ERGFEVEVIPGiTSFS-AAAAALGI-PLaegdEPLTVLP 152
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495231461 143 AADLAAIPPELM---TALVVTQVYNHYvaseAKLV-LMEYYPDDYEVIVVKNLGLPDEQLLT 200
Cdd:COG2243  153 GTLLEEELERALddfDTVVIMKVGRNF----PKVReALEEAGLLDRAWYVERAGMPDERIVP 210
PLN02625 PLN02625
uroporphyrin-III C-methyltransferase
1-121 3.10e-05

uroporphyrin-III C-methyltransferase


Pssm-ID: 178232 [Multi-domain]  Cd Length: 263  Bit Score: 45.39  E-value: 3.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   1 MGEITIVGLGPGSFGLITVETLELLKTAEKLLLRTAKHPTVTAMMERGIAFtsydyVYEEKT--SFKEVYETIAHECLRQ 78
Cdd:PLN02625  14 PGNVFLVGTGPGDPDLLTLKALRLLQTADVVLYDRLVSPDILDLVPPGAEL-----LYVGKRggYHSRTQEEIHELLLSF 88
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 495231461  79 AALGKKVVYAVPGSPLVAEKT---VMLIRQlageQGIAVRILPGMS 121
Cdd:PLN02625  89 AEAGKTVVRLKGGDPLVFGRGgeeMDALRK----NGIPVTVVPGIT 130
MazG pfam03819
MazG nucleotide pyrophosphohydrolase domain; This domain is about 100 amino acid residues in ...
397-450 1.21e-04

MazG nucleotide pyrophosphohydrolase domain; This domain is about 100 amino acid residues in length. It is found in the MazG protein from E. coli. It contains four conserved negatively charged residues that probably form an active site or metal binding site. This domain is found in isolation in some proteins as well as associated with pfam00590. This domain is clearly related to pfam01503 another pyrophosphohydrolase involved in histidine biosynthesis. This family may be structurally related to the NUDIX domain pfam00293 (Bateman A pers. obs.).


Pssm-ID: 427525  Cd Length: 74  Bit Score: 40.27  E-value: 1.21e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 495231461  397 EELEELKDACAQGQAINMEAELGDVIFSIVNLARFLKIDGEV----ALNTTNNKFRRR 450
Cdd:pfam03819  12 EEVYEVAEAIEKEDLDNLEEELGDVLLQVLFHANIAEEEGGFdledVFQRILEKLIRR 69
Precorrin_2_C20_MT cd11645
Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase ...
7-221 4.44e-04

Precorrin-2 C20-methyltransferase, also named CobI or CbiL; Precorrin-2 C20-methyltransferase (also known as S-adenosyl-L-methionine--precorrin-2 methyltransferase) participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways in bacteria. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. Precorrin-2 C20-methyltransferase catalyzes methylation at the C-20 position of a cyclic tetrapyrrole ring of precorrin-2 using S-adenosylmethionine as a methyl group source to produce precorrin-3A. In the anaerobic pathway, cobalt is inserted into precorrin-2 by CbiK to generate cobalt-precorrin-2, which is the substrate for CbiL, a C20 methyltransferase. In Clostridium difficile, CbiK and CbiL are fused into a bifunctional enzyme. In the aerobic pathway, the precorrin-2 C20-methyltransferase is named CobI. This family includes CbiL and CobI precorrin-2 C20-methyltransferases, both as stand-alone enzymes and when CbiL forms part of a bifunctional enzyme.


Pssm-ID: 381172 [Multi-domain]  Cd Length: 223  Bit Score: 41.72  E-value: 4.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461   7 VGLGPGSFGLITVETLELLKTAEKLLL-RTAKHPTVTAMMERGIAFTSYDYVYE-------EKTSFKEVYETIAHECLRQ 78
Cdd:cd11645    1 VGVGPGDPELLTLKAVRILKEADVIFVpVSKGGEGSAALIIAAALLIPDKEIIPlefpmtkDREELEEAWDEAAEEIAEE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495231461  79 AALGKKVVYAVPGSPLV-AekTVMLIRQLAGEQGIAVRILPG-MSFLEVLyTRLAIdPI----EGITVLDA-ADLAAIPP 151
Cdd:cd11645   81 LKEGKDVAFLTLGDPSLyS--TFSYLLERLRAPGVEVEIIPGiTSFSAAA-ARLGI-PLaegdESLAILPAtYDEEELEK 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 495231461 152 ELMTA--LVVTQVYNHYvaseAKLV-LMEYYPDDYEVIVVKNLGLPDEQLltVPLFEMDRVQEIDHLTSVYVP 221
Cdd:cd11645  157 ALENFdtVVLMKVGRNL----EEIKeLLEELGLLDKAVYVERCGMEGERI--YTDLEELKEEKLPYFSLIIVK 223
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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