|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
14-879 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 770.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 14 MHRKEKVYFKLRTLTQKIDISKykvlEKIGFETTLLSEKLNISRNNVSTELNSLVAEGRVIKILGKPVRYLDRIWLEANA 93
Cdd:COG1221 1 MKRKEKILNYLKELTKNLSLEK----KSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFLDKEAFEEQF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 94 KIMIKDPIIKNDTDFRKliigtsllcnakeeafscnkneihhlieNHVKPKDDIFANIVGSKDDLKNQVKQARAAILYPP 173
Cdd:COG1221 77 GTKLKSEYSFVELLAEK----------------------------ENNEEEEDPFDNLIGANGSLKNAIEQAKAAILYPP 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 174 KGLHTLLIGPTGIGKTTFAEIMYRYAIEIGRFSFNAPYVIFNCADYAENLQLLVSHLFGNVKGAFTGADIEKKGLVDQAN 253
Cdd:COG1221 129 KGLHTLILGPTGVGKSFFAELMYEYAIEIGVLPEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGADKDKEGLIEKAD 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 254 GGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGESENTRKADILIIAATTEDPKKVILGTLLRRIPVIIMLPSLAERSLK 333
Cdd:COG1221 209 GGILFLDEVHRLPPEGQEMLFTFMDKGIYRRLGETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLE 288
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 334 GRMTLICQFFREESVKIKIPVTVSKEVLKVLLIYKCPGNIGQLKNDIQLMCANAFVEYVTEQQSDVHIKLSQLSQRLKEG 413
Cdd:COG1221 289 ERLELIKHFFKEEAKRLNKPIKVSKEVLKALLLYDCPGNIGQLKSDIQLACAKAFLNYITNKKEEIEITLSDLPENVKKG 368
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 414 VFTIDNKRQEIAKVFNLNDfESITFNGAKEDLHASLKnvllyDDYKTEEDFYDVILRSAQKFLEKGLSVNEIRERMNQQI 493
Cdd:COG1221 369 LLKLKENREELDKLSEYLE-EYLIISPDTEKKLISEE-----DEYELPYNFYEIIEDKYEELKSEGLSEEEINKIISKDI 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 494 qNRFHDSFSASQDHNLLLEKEVLAKIVTPEIVNIIEESLAESKeaMGLSFDSKVIYSLALHMETLVERLRLGQISIHPNI 573
Cdd:COG1221 443 -ESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEEAEKK--LLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQL 519
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 574 KKIYEEHQQEFAIAERIKNKLEEKLPIHIPDDEVAFTAMLL--YSLHIKKSEENIEVLVITHGYATATNMVQVAQTLLGY 651
Cdd:COG1221 520 NEIKKKYYEEFILAAEAIKIIEEELKILIPDEEEGFILLLLieLKEEKSLSENVIVVVVIAHGGAAASSSMAVVNLLLLE 599
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 652 ECIHAIDMPLEEKVEVILNKATERVKKINKGRGVLLLVDMGSLTTFSEIISERTGIPTRVVKMVSTPMVIEAARKAMLPN 731
Cdd:COG1221 600 VAVAAIDDPPLEVVDVLIEEKTIVVIINKGKGGLLLLLDDGGSLFGIIIIEEEGIIIVTVVIVSTTTVLEAAARKKLLEL 679
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 732 ISLDMLVESVKAMSPLIGGRIKVDNSPVEFGYSPIIYQERAIAMLEEILTFLNVGKASRLLNEVLEKVADTCNGVIDESI 811
Cdd:COG1221 680 DLDEIIVLEELLKNPLESKKIKISTSKKKKIIVTTIAITTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKI 759
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495235341 812 RIKFLFHCSCMIERIIRNEPLPYTNFLHIKESKESLFKTIKDTFIIVEEAFGIEIPNTELAYVVEMMD 879
Cdd:COG1221 760 IEEKKEVIIIVIISIIPLIIPPIILLLALKLIILIEILVLLEILIDKEKIENIIKELLSLLNIIIVLL 827
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
36-878 |
1.67e-143 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 448.41 E-value: 1.67e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 36 YKVLEKIGFETTLLSEKLNISRNNVSTELNSLVAEGRVIKILGKPVRYLDRIwleanakIMIKDPIIKNDTDFRKLIIGT 115
Cdd:COG3933 1 KELSKKTESKVTNLNEAIAKARDLKELIKSKLLKESTGLLKLLALLLLLKRL-------SELLLELKKLKKEKKTLKKER 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 116 SLLCNAKEEafscnkneihhLIENHVKPKDDIFANIVGSKDDLKNQVKQARAAILYPPKGLHTLLIGPTGIGKTTFAEIM 195
Cdd:COG3933 74 SLLEKKKNK-----------LNLKEEKKEKLDFKALIGLSLSLLSAAAAAKAAKPPPPLGLLTLLLGGTGGGKSAFAGYM 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 196 YRYAIEIGRFsfNAPYVIFNCADYAENLQLLVSHLFGNVKGAFTGADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFS 275
Cdd:COG3933 143 YAFAAKIAEL--AAPFVFFNFANAAYNPNLLLLLLFGLGGGAGGGAGADGGGLGGAAGAGGGLLDLLDELPLEGEEQEEL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 276 LMDRGSYRRLGESENTRKADILIIAATTEDPKKVILGTLLRRIPVIIMLPSLAERSLKGRMTLICQFFREESVKIKIPVT 355
Cdd:COG3933 221 FFLLGKGLFRGEGGESRSRRVRIIRATTETEESLLLTTLTRRIRIIIILPRLPILERRERERLLLLLFEFEEEEIRIIKI 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 356 VSKEVLKVLLIYKCPGNIGQLKNDIQLMCANAFVEYVTEQQSDvHIKLSQLSQRLKEGVFTIDNKRQEIAKVFNLNDFES 435
Cdd:COG3933 301 LIVLLLALLLLLLYVNNLGQLGLLKLLIKAAAAAALAKAIKEA-TIILRLLSKLLKLLLLLLLNERLLLLELKILIEPLD 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 436 ITFNgakedlhaSLKNVLLYDDYKTEEDFYDVILRSAQKFLEKGLSVNEIRerMNQQIQNRFHDSFSaSQDHNLLLEKEV 515
Cdd:COG3933 380 IFFD--------SSASSDESDESEEDENLYEIIEIKKKLLLELGIDEEEIN--IIIEIDIDVHLLKF-IYDDNKNFNKEE 448
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 516 LAKIVTPEIVNIIEESLAESKEAMGLSFDSKVIYSLALHMETLVERLRLGQISIHPNIKKIYEEHQQEFAIAERIKNKLE 595
Cdd:COG3933 449 LAKIVDEDIINVVEEILELAEKKLGRKFSENFIYALSLHLSSFIERIKEGKEIINPNLNEIKKKYPKEFKVAKEIKELIE 528
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 596 EKLPIHIPDDEVAFTAMLLYSLHIKKSEENIEVLVITHGYATATNMVQVAQTLLGYECIHAIDMPLEEKVEVILNKATER 675
Cdd:COG3933 529 QELDIEIPEDEVGFLTLFLVSLNENNESGKVGVIVLAHGYSTASSMAEVANRLLGTNIFEAIDMPLDMSPEDILEKLKEY 608
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 676 VKKINKGRGVLLLVDMGSLTTFSEIISERTGIPTRVVKMVSTPMVIEAARKAMLpNISLDMLVESVKAMSP--------- 746
Cdd:COG3933 609 VKKIDTGKGVLLLVDMGSLTTFGEIIEEETGIPVKTIDMVSTPLVLEAGRKALL-GMSLEEIYESLKNFNPyekiisknk 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 --------------------------------------------------------------------------------
Cdd:COG3933 688 peknkkkaiittcftgegtavkikdllekslpedednieiipldyleleefkekideifkeyeilaivgtidpeipdipf 767
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 747 -----------------LIGGRIKVDNspVEFGYSPIIYQErAIAMLEEILTFLNVGKASRLLNEVLEKVADTCNGVIDE 809
Cdd:COG3933 768 isledlisgegieklqkLLGGELDAEE--IEEINNEIIKNF-SLESLIESLTILNPEKIINELEDFISRLENLLGIKLDN 844
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 810 SIRIKFLFHCSCMIERIIRN-EPLPYTNFLHIKESKESLFKTIKDTFIIVEEAFGIEIPNTELAYVVEMM 878
Cdd:COG3933 845 DVKIGLILHIACMIERLVTGeEILTYPNKEEFIQENESEYAVIKEAFSPIEEKYNIKIPDSEIAYIYDIL 914
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
151-321 |
5.21e-53 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 182.22 E-value: 5.21e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 151 IVGSKDDLKNQVKQARAAILYPpkgLHTLLIGPTGIGKTTFAEIMYRYAIEIgrfsfNAPYVIFNCADYAENLqlLVSHL 230
Cdd:pfam00158 1 IIGESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLSPRA-----DGPFVAVNCAAIPEEL--LESEL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 231 FGNVKGAFTGADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGESEnTRKADILIIAATTEDPKKVI 310
Cdd:pfam00158 71 FGHEKGAFTGADSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTK-PIKVDVRIIAATNRDLEEAV 149
|
170
....*....|....*.
gi 495235341 311 L-GT----LLRRIPVI 321
Cdd:pfam00158 150 AeGRfredLYYRLNVI 165
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
148-387 |
3.12e-36 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 145.81 E-value: 3.12e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 148 FANIVGSKDDLKNQVKQARAAIlypPKGLHTLLIGPTGIGKTTFAEimyryAIEIGRFSFNAPYVIFNCADYAENLqlLV 227
Cdd:COG3284 320 LAALAGGDPAMRRALRRARRLA---DRDIPVLILGETGTGKELFAR-----AIHAASPRADGPFVAVNCAAIPEEL--IE 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 228 SHLFGNVKGAFTGADIE-KKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGESEnTRKADILIIAATTED- 305
Cdd:COG3284 390 SELFGYEPGAFTGARRKgRPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTK-PIPVDVRLIAATHRDl 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 306 PKKVILGT----LLRRIPVI-IMLPSLAERSlkGRMTLICQFFREESvKIKIPVTVSKEVLKVLLIYKCPGNIGQLKNDI 380
Cdd:COG3284 469 RELVAAGRfredLYYRLNGLtLTLPPLRERE--DLPALIEHLLRELA-AGRGPLRLSPEALALLAAYPWPGNVRELRNVL 545
|
....*..
gi 495235341 381 QLMCANA 387
Cdd:COG3284 546 RTALALA 552
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
179-395 |
7.38e-33 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 132.39 E-value: 7.38e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYAieiGRFsfNAPYVIFNCADYAENLqlLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:COG2204 158 LITGESGTGKELVARAIHRLS---PRA--DGPFVAVNCAAIPEEL--LESELFGHEKGAFTGAVARRIGKFELADGGTLF 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGESEnTRKADILIIAATTEDPKKVILGTLLR-----RIPVI-IMLPSLAERsl 332
Cdd:COG2204 231 LDEIGEMPLALQAKLLRVLQEREFERVGGNK-PIPVDVRVIAATNRDLEELVEEGRFRedlyyRLNVFpIELPPLRER-- 307
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495235341 333 KGRMTLICQFFREE-SVKIKIPVTVSKEVLKVLLIYKCPGNIGQLKNDIQLMCANAFVEYVTEQ 395
Cdd:COG2204 308 REDIPLLARHFLARfAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAE 371
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
148-378 |
1.92e-29 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 122.57 E-value: 1.92e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 148 FANIVGSKDDLKNQVKQA-RAAilyppkglHT----LLIGPTGIGKTTFAEimyryAI-EIGRFSfNAPYVIFNCADYAE 221
Cdd:COG3829 137 FDDIIGKSPAMKELLELAkRVA--------KSdstvLILGESGTGKELFAR-----AIhNASPRR-DGPFVAVNCAAIPE 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 222 NLqlLVSHLFGNVKGAFTGADIE-KKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGESEnTRKADILIIA 300
Cdd:COG3829 203 NL--LESELFGYEKGAFTGAKKGgKPGLFELADGGTLFLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTK-PIPVDVRIIA 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 301 ATTEDPKKVILGTLLR-----RIPVI-IMLPSLAERslKGRMTLICQFFREE-SVKIKIPV-TVSKEVLKVLLIYKCPGN 372
Cdd:COG3829 280 ATNRDLEEMVEEGRFRedlyyRLNVIpIHIPPLRER--KEDIPLLAEHFLEKfNKKYGKNIkGISPEALELLLAYDWPGN 357
|
....*.
gi 495235341 373 IGQLKN 378
Cdd:COG3829 358 VRELEN 363
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
88-380 |
1.07e-23 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 106.04 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 88 WLEANA------KIMIKD--------PIIKNDTDFRKLIIGTSLLCnaKEEAfscnknEIHHLIENHVKPKDDIFANIVG 153
Cdd:COG3283 137 WLESNEprpqseRVVINGqdyladilPIYLPDEEGKSILAGAVVTL--KSAA------RLGEQLQALQVNDDSGFDHIVA 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 154 SKDDLKNQVKQA-RAAILYPPkglhtLLI-GPTGIGKTTFAEIMYRyaieigrFSF--NAPYVIFNCA----DYAEnlql 225
Cdd:COG3283 209 SSPKMRQVIRQAkKMAMLDAP-----LLIqGETGTGKELLARACHL-------ASPrgDKPFLALNCAalpdDVAE---- 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 226 lvSHLFGNVKGAFTGADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGEsENTRKADILIIAATTED 305
Cdd:COG3283 273 --SELFGYAPGAFGNAREGKKGLFEQANGGTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGE-EQEVKVDVRVICATQKD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 306 -PKKVILGT----LLRRIPVI-IMLPSLAERsLKGRMTLICQFFREESVKIKIPV-TVSKEVLKVLLIYKCPGNIGQLKN 378
Cdd:COG3283 350 lAELVQEGEfredLYYRLNVLtLTLPPLRER-KSDILPLAEHFVARFSQQLGRPRpRLSPDLVDFLQSYPWPGNVRQLEN 428
|
..
gi 495235341 379 DI 380
Cdd:COG3283 429 AL 430
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
626-746 |
9.25e-23 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 94.21 E-value: 9.25e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 626 IEVLVITHGyATATNMVQVAQTLLG-YECIHAIDMPLEEKVEVILNKATERVKKINKGRGVLLLVDM--GSLTTFSEIIS 702
Cdd:cd00006 1 VGIIIATHG-GFASGLLNSAEMILGeQENVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLS 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 495235341 703 ERtGIPTRVVKMVSTPMVIEAARKAMLPNiSLDMLVESVKAMSP 746
Cdd:cd00006 80 ME-HPPVEVIAGVNLPMLLEAARARELGL-SLDELVENALEAGR 121
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
148-380 |
4.01e-22 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 101.30 E-value: 4.01e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 148 FANIVGSKDDLKNQVKQARA-AILYPPkglhTLLIGPTGIGKTTFAeimyrYAIEIGRFSFNAPYVIFNCA----DYAEn 222
Cdd:PRK10820 203 FSQIVAVSPKMRQVVEQARKlAMLDAP----LLITGDTGTGKDLLA-----YACHLRSPRGKKPFLALNCAsipdDVVE- 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 223 lqllvSHLFGNVKGAFTGADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGEsENTRKADILIIAAT 302
Cdd:PRK10820 273 -----SELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE-DHEVHVDVRVICAT 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 303 TEDPKKVILGTLLR-----RIPVI-IMLPSLAERSlKGRMTL----ICQFFREESV-KIKIpvtvSKEVLKVLLIYKCPG 371
Cdd:PRK10820 347 QKNLVELVQKGEFRedlyyRLNVLtLNLPPLRDRP-QDIMPLtelfVARFADEQGVpRPKL----AADLNTVLTRYGWPG 421
|
....*....
gi 495235341 372 NIGQLKNDI 380
Cdd:PRK10820 422 NVRQLKNAI 430
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
179-381 |
4.18e-22 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 100.69 E-value: 4.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEimyryAIEIGRFSFNAPYVIFNCADYAENLqlLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:PRK11361 170 LISGESGTGKELIAR-----AIHYNSRRAKGPFIKVNCAALPESL--LESELFGHEKGAFTGAQTLRQGLFERANEGTLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGESEnTRKADILIIAATTEDPKKVIL-GT----LLRRIPVI-IMLPSLAERSL 332
Cdd:PRK11361 243 LDEIGEMPLVLQAKLLRILQEREFERIGGHQ-TIKVDIRIIAATNRDLQAMVKeGTfredLFYRLNVIhLILPPLRDRRE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 495235341 333 KGRMtLICQFFREESVKIKIPVT-VSKEVLKVLLIYKCPGNIGQLKNDIQ 381
Cdd:PRK11361 322 DISL-LANHFLQKFSSENQRDIIdIDPMAMSLLTAWSWPGNIRELSNVIE 370
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
170-396 |
7.75e-21 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 96.25 E-value: 7.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 170 LYPPKGLHTLLIGPTGIGKttfaEIMYRyAIEIGRFSFNAPYVIFNCAdyAENLQLLVSHLFGNVKGAFTGADIEKKGLV 249
Cdd:PRK10365 157 LVAPSEATVLIHGDSGTGK----ELVAR-AIHASSARSEKPLVTLNCA--ALNESLLESELFGHEKGAFTGADKRREGRF 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 250 DQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGeSENTRKADILIIAATTED-PKKVILG----TLLRRIPVI-IM 323
Cdd:PRK10365 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVG-SNQTISVDVRLIAATHRDlAAEVNAGrfrqDLYYRLNVVaIE 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495235341 324 LPSLAERslKGRMTLICQFF--REESVKIKIPVTVSKEVLKVLLIYKCPGNIGQLKNDIQLMCANAFVEYVTEQQ 396
Cdd:PRK10365 309 VPSLRQR--REDIPLLAGHFlqRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERE 381
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
179-381 |
1.62e-20 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 95.29 E-value: 1.62e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYAIEIGRfsfnaPYVIFNCADYAEnlQLLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:PRK15115 161 LINGQSGTGKEILAQAIHNASPRASK-----PFIAINCGALPE--QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGeSENTRKADILIIAATTED-PKKVILGT----LLRRIPVIIM-LPSLAERSL 332
Cdd:PRK15115 234 LDEIGDMPAPLQVKLLRVLQERKVRPLG-SNRDIDIDVRIISATHRDlPKAMARGEfredLYYRLNVVSLkIPALAERTE 312
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 495235341 333 KgrMTLICQFFREESVKIKIPV--TVSKEVLKVLLIYKCPGNIGQLKNDIQ 381
Cdd:PRK15115 313 D--IPLLANHLLRQAAERHKPFvrAFSTDAMKRLMTASWPGNVRQLVNVIE 361
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
179-376 |
3.70e-20 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 94.85 E-value: 3.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEimyryAIEIGRFSFNAPYVIFNCADYAENLqlLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:PRK05022 214 LILGETGVGKELVAR-----AIHAASPRADKPLVYLNCAALPESL--AESELFGHVKGAFTGAISNRSGKFELADGGTLF 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGeSENTRKADILIIAATTEDPKK-VILGT----LLRRIPVI-IMLPSLAERsl 332
Cdd:PRK05022 287 LDEIGELPLALQAKLLRVLQYGEIQRVG-SDRSLRVDVRVIAATNRDLREeVRAGRfradLYHRLSVFpLSVPPLRER-- 363
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 495235341 333 KGRMTLICQFFREES-VKIKIP-VTVSKEVLKVLLIYKCPGNIGQL 376
Cdd:PRK05022 364 GDDVLLLAGYFLEQNrARLGLRsLRLSPAAQAALLAYDWPGNVREL 409
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
179-381 |
2.50e-19 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 91.73 E-value: 2.50e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEimyryAIEIGRFSFNAPYVIFNCADYAENLqlLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:TIGR02915 166 LLLGESGTGKEVLAR-----ALHQLSDRKDKRFVAINCAAIPENL--LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLF 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGESENTrKADILIIAATTEDPKKVIL-GT----LLRRIPVI-IMLPSLAERSl 332
Cdd:TIGR02915 239 LDEIGDLPLNLQAKLLRFLQERVIERLGGREEI-PVDVRIVCATNQDLKRMIAeGTfredLFYRIAEIsITIPPLRSRD- 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 495235341 333 kGRMTLICQFF-----REESVKIKipvTVSKEVLKVLLIYKCPGNIGQLKNDIQ 381
Cdd:TIGR02915 317 -GDAVLLANAFlerfaRELKRKTK---GFTDDALRALEAHAWPGNVRELENKVK 366
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
179-378 |
2.95e-19 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 91.86 E-value: 2.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYAIEIgrfsfNAPYVIFNCADYAENLqlLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:PRK10923 165 LINGESGTGKELVAHALHRHSPRA-----KAPFIALNMAAIPKDL--IESELFGHEKGAFTGANTIRQGRFEQADGGTLF 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGESENTrKADILIIAATTED-PKKVILGT----LLRRIPVI-IMLPSLAERSL 332
Cdd:PRK10923 238 LDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPV-KVDVRIIAATHQNlEQRVQEGKfredLFHRLNVIrVHLPPLRERRE 316
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 495235341 333 K-GRMT--LICQFFREESVKIKIpvtVSKEVLKVLLIYKCPGNIGQLKN 378
Cdd:PRK10923 317 DiPRLArhFLQVAARELGVEAKL---LHPETEAALTRLAWPGNVRQLEN 362
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
179-378 |
2.40e-18 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 87.03 E-value: 2.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYAieiGRFsfNAPYVIFNCADYAENLqlLVSHLFGNVKGAFTGADIEKKGLVDQANGGILF 258
Cdd:PRK11608 33 LIIGERGTGKELIASRLHYLS---SRW--QGPFISLNCAALNENL--LDSELFGHEAGAFTGAQKRHPGRFERADGGTLF 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGSYRRLGESENTrKADILIIAATTED-PKKVILGT----LLRRIPV-IIMLPSLAERsl 332
Cdd:PRK11608 106 LDELATAPMLVQEKLLRVIEYGELERVGGSQPL-QVNVRLVCATNADlPAMVAEGKfradLLDRLAFdVVQLPPLRER-- 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 495235341 333 KGRMTLICQFF-----REesvkIKIPV--TVSKEVLKVLLIYKCPGNIGQLKN 378
Cdd:PRK11608 183 QSDIMLMAEHFaiqmcRE----LGLPLfpGFTERARETLLNYRWPGNIRELKN 231
|
|
| RtcR |
COG4650 |
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a ... |
179-330 |
8.99e-18 |
|
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 443688 [Multi-domain] Cd Length: 534 Bit Score: 87.58 E-value: 8.99e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRyaIEIGRFSFNAPYVIFNCA----DYAenlqllVSHLFGNVKGAFTGADIEKKGLVDQANG 254
Cdd:COG4650 212 LLTGPTGAGKSQLARRIYE--LKKARHQVSGRFVEVNCAtlrgDGA------MSALFGHVKGAFTGAVSDRAGLLRSADG 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 255 GILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGeSENTRKADILIIAATTED-PKKVILGT----LLRRIPV-IIMLPSLA 328
Cdd:COG4650 284 GVLFLDEIGELGLDEQAMLLRAIEEKRFLPVG-SDKEVSSDFQLIAGTNRDlRQEVAEGRfredLLARINLwTFRLPGLA 362
|
..
gi 495235341 329 ER 330
Cdd:COG4650 363 ER 364
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
160-326 |
3.21e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 79.50 E-value: 3.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 160 NQVKQARAAILYPPKGlHTLLIGPTGIGKTTFAEIMYRYAIEigrfsFNAPYVIFNCADYAEnlQLLVSHLFGnvkgafT 239
Cdd:cd00009 5 EAIEALREALELPPPK-NLLLYGPPGTGKTTLARAIANELFR-----PGAPFLYLNASDLLE--GLVVAELFG------H 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 240 GADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRlgesenTRKADILIIAATTEDPKKVILGTLLRRIP 319
Cdd:cd00009 71 FLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR------IDRENVRVIGATNRPLLGDLDRALYDRLD 144
|
....*..
gi 495235341 320 VIIMLPS 326
Cdd:cd00009 145 IRIVIPL 151
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
132-381 |
6.98e-17 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 85.27 E-value: 6.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 132 EIHHLIENHVKPK----------DDIFANIVGSKDDLKNQVKQARAAilypPKGLHTLLI-GPTGIGKTTFAEIMYRYAI 200
Cdd:PRK15429 349 EIHRLKERLVDENlalteqlnnvDSEFGEIIGRSEAMYSVLKQVEMV----AQSDSTVLIlGETGTGKELIARAIHNLSG 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 201 EIGRfsfnaPYVIFNCAdyAENLQLLVSHLFGNVKGAFTGADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRG 280
Cdd:PRK15429 425 RNNR-----RMVKMNCA--AMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 281 SYRRLGeSENTRKADILIIAATTEDPKKVILGTLLR-----RIPVI-IMLPSLAERSlkGRMTLICQFFreeSVKI---- 350
Cdd:PRK15429 498 EFERLG-SNKIIQTDVRLIAATNRDLKKMVADREFRsdlyyRLNVFpIHLPPLRERP--EDIPLLVKAF---TFKIarrm 571
|
250 260 270
....*....|....*....|....*....|....*.
gi 495235341 351 -----KIPVtvskEVLKVLLIYKCPGNIGQLKNDIQ 381
Cdd:PRK15429 572 grnidSIPA----ETLRTLSNMEWPGNVRELENVIE 603
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
133-411 |
1.66e-16 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 83.96 E-value: 1.66e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 133 IHHLIENHVKPKDDIFANIVGSKDDLKNQVKQARAAIlyppKGLHTLLI-GPTGIGKTTFAEimyryAIEIGRFSFNAPY 211
Cdd:PRK11388 309 MRQLMTSQLGKVSHTFDHMPQDSPQMRRLIHFGRQAA----KSSFPVLLcGEEGVGKALLAQ-----AIHNESERAAGPY 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 212 VIFNCADYAENLqlLVSHLFGnvkGAFTGADIEKKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLgESENT 291
Cdd:PRK11388 380 IAVNCQLYPDEA--LAEEFLG---SDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRL-DSRRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 292 RKADILIIAATTED-PKKVILGTLLRRI-----PVIIMLPSLAER--SLKGrmtLICQFFREESVKIKIPVTVSKEVLKV 363
Cdd:PRK11388 454 IPVDVRVIATTTADlAMLVEQNRFSRQLyyalhAFEITIPPLRMRreDIPA---LVNNKLRSLEKRFSTRLKIDDDALAR 530
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 495235341 364 LLIYKCPGNIGQLKNDIQ---LMCANAfveyvteqqsdvHIKLSQLSQRLK 411
Cdd:PRK11388 531 LVSYRWPGNDFELRSVIEnlaLSSDNG------------RIRLSDLPEHLF 569
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
161-384 |
3.10e-16 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 82.84 E-value: 3.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 161 QVKQARAAI-LYPPKGLHTLLIGPTGIGKTTFAEIMYR-YAIEIGRFSFNA--PYVIFNCADYAENLqlLVSHLFGNVKG 236
Cdd:PRK15424 227 QMEQVRQTIlLYARSSAAVLIQGETGTGKELAAQAIHReYFARHDARQGKKshPFVAVNCGAIAESL--LEAELFGYEEG 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 237 AFTGADIE-KKGLVDQANGGILFLDEVHRLPPEGQEMLFSLMDRGSYRRLGESENTrKADILIIAATTEDpkkviLGTLL 315
Cdd:PRK15424 305 AFTGSRRGgRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPV-PVDVRVISATHCD-----LEEDV 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 316 R----------RIPVI-IMLPSLAERslKGRMTLICQ-FFREESVKIKIPVTVSK-----EVLKVLLIYKCPGNIGQLKN 378
Cdd:PRK15424 379 RqgrfrrdlfyRLSILrLQLPPLRER--VADILPLAEsFLKQSLAALSAPFSAALrqglqQCETLLLHYDWPGNVRELRN 456
|
....*.
gi 495235341 379 DIQLMC 384
Cdd:PRK15424 457 LMERLA 462
|
|
| EIIA-man |
pfam03610 |
PTS system fructose IIA component; |
628-732 |
1.36e-12 |
|
PTS system fructose IIA component;
Pssm-ID: 427399 [Multi-domain] Cd Length: 113 Bit Score: 64.96 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 628 VLVITHGYAtATNMVQVAQTLLGYEC-IHAIDMPLEEKVEVILNKATERVKKINKGRGVLLLVDMGSLTTFSEIISERTG 706
Cdd:pfam03610 2 IVIVSHGEL-AEGLLELAEMMAGEQEnVIAVGGTPGESIGTSFEKIVEAIENLDSGDGVLVLVDLGGATPNNEAALELLE 80
|
90 100
....*....|....*....|....*..
gi 495235341 707 IPTR-VVKMVSTPMVIEAARKAMLPNI 732
Cdd:pfam03610 81 KERMeVITGVNLPMVEGAYAARVSASL 107
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
523-617 |
1.00e-11 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 61.89 E-value: 1.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 523 EIVNIIEESLAESkeamglSFDSKVIYSLALHMETLVERLRLGQISIHPNIKKIYEEHQQEFAIAERIKNKLEEKLPIHI 602
Cdd:pfam00874 2 EIIELIEKKLGIT------FDDDILYIRLILHLAFAIERIKEGITIENPLLEEIKEKYPKEFEIAKKILEILEEELGIEL 75
|
90
....*....|....*
gi 495235341 603 PDDEVAFTAMLLYSL 617
Cdd:pfam00874 76 PEDEIGYIALHFLSA 90
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
419-652 |
6.12e-11 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 66.04 E-value: 6.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 419 NKRQEIAKVFNLNDFESITFNGAKEDLHASlKNVLLYDDYKTEEDF--YDVILRSAQKfleKGLSV----NEIRERMNQQ 492
Cdd:COG3711 80 KERVAYILLRLLLAGDPISLDDLAEELFVS-RSTILNDLKKIEKILkkYGLTLERKPN---YGIKLegseLDIRKALAEL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 493 IQNRFHDSFsasqdhnllLEKEVLAKIVTPEIVNIIEESLAESKEAMGLSFDSKVIYSLALHMETLVERLRLGQISIHPN 572
Cdd:COG3711 156 LSELLSEND---------LLSLLLLKLIPEEDLELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDN 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 573 IKKIYEEHQQEFAIAERIKNKLEEKLPIHIPDDEVAFTAMLLYSLHIKKSEENIEVLVITHgYATATNMVQVAQTLLGYE 652
Cdd:COG3711 227 PLLWEIKKPKEYEIAKEILKLIEERLGISLPEDEIGYIALHLLGARLNNDNELSEIITLEI-TKLIKEIINIIEEELGID 305
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
177-317 |
3.06e-10 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 58.84 E-value: 3.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 177 HTLLIGPTGIGKTTFAEIMyRYAIEigrfsfNAPYVIFNCADYAENLQLLVSHLFGNVKGAFTgadieKKGLVDQA-NGG 255
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERL-AAALS------NRPVFYVQLTRDTTEEDLFGRRNIDPGGASWV-----DGPLVRAArEGE 68
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495235341 256 ILFLDEVHRLPPEGQEMLFSLMDRGSYRR--LGESENTRKADILIIAATTEDPK--KVILGTLLRR 317
Cdd:pfam07728 69 IAVLDEINRANPDVLNSLLSLLDERRLLLpdGGELVKAAPDGFRLIATMNPLDRglNELSPALRSR 134
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
174-325 |
4.78e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 58.92 E-value: 4.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 174 KGLHTLLIGPTGIGKTTFAEIMYRYAIEIGRfsfnaPYVIFNCADYAE-NLQLLVSHLFGNVKGAFTGADIEKKG--LVD 250
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGG-----GVIYIDGEDILEeVLDQLLLIIVGGKKASGSGELRLRLAlaLAR 75
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495235341 251 QANGGILFLDEVHRLPPEGQEMLFSLMDrgsyRRLGESENTRKADILIIAATTeDPKKVILGTLLRRIPVIIMLP 325
Cdd:smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLE----ELRLLLLLKSEKNLTVILTTN-DEKDLGPALLRRRFDRRIVLL 145
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
484-638 |
8.14e-10 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 62.57 E-value: 8.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 484 EIRERMNQQIQNRFHDSFSASQDHNLLL--------EKEVLAKIVTPEIVNIIEESLAESKEAMGLSF--DSKVIYSLAL 553
Cdd:COG3711 239 EIAKEILKLIEERLGISLPEDEIGYIALhllgarlnNDNELSEIITLEITKLIKEIINIIEEELGIDLdeDSLLYERLIT 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 554 HMETLVERLRLGQISIHPNIKKIYEEHQQEFAIAERIKNKLEEKLPIHIPDDEVAFTAMLLY-SLHIKKSEENIEVLVIT 632
Cdd:COG3711 319 HLKPAINRLKYGIPIRNPLLEEIKEKYPEAFELAKKIAKYLEKELGIEIPEDEIGYLTLHFGaALERQKESKKKRVLVVC 398
|
....*..
gi 495235341 633 H-GYATA 638
Cdd:COG3711 399 SsGIGTS 405
|
|
| ManX |
COG2893 |
Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and ... |
628-743 |
1.04e-09 |
|
Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism];
Pssm-ID: 442138 [Multi-domain] Cd Length: 126 Bit Score: 57.07 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 628 VLVITHG-YATAtnMVQVAQTLLG-YECIHAIDMPLEEKVEVILNKATERVKKINKGRGVLLLVDM--GS-LTTFSEIIS 702
Cdd:COG2893 1 IVIATHGpLAEG--LLSSAEMILGeQENVEAVDLYPGDDPEDLREKLEEAIAELDSGDGVLILTDLfgGTpSNVAARLLA 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 495235341 703 ERTGIptRVVKMVSTPMVIEAA--RKAMlpniSLDMLVESVKA 743
Cdd:COG2893 79 KHENV--EVIAGVNLPMLLEALtyREDL----SLDELVEKALE 115
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
144-330 |
4.91e-09 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 59.54 E-value: 4.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 144 KDDIFANIVGSkDDLKNQVKQARAAILYPPK---------GLHTLLIGPTGIGKTTFAEIMyryAIEIGrfsfnAPYVIF 214
Cdd:COG0464 152 REAILDDLGGL-EEVKEELRELVALPLKRPElreeyglppPRGLLLYGPPGTGKTLLARAL---AGELG-----LPLIEV 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 215 NCADyaenlqlLVSHLFG----NVKGAFTGAdiekkglvDQANGGILFLDEVhrlppegqEMLFSlmDRGSYRRLGESE- 289
Cdd:COG0464 223 DLSD-------LVSKYVGetekNLREVFDKA--------RGLAPCVLFIDEA--------DALAG--KRGEVGDGVGRRv 277
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 495235341 290 -NT-------RKADILIIAATTE----DPkkvilgTLLRRIPVIIM--LPSLAER 330
Cdd:COG0464 278 vNTlltemeeLRSDVVVIAATNRpdllDP------ALLRRFDEIIFfpLPDAEER 326
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
808-875 |
7.92e-09 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 53.41 E-value: 7.92e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495235341 808 DESIRIKFLFHCSCMIERIIRNEPLPYTNFLHIKESKESLFKTIKDTFIIVEEAFGIEIPNTELAYVV 875
Cdd:pfam00874 17 DDILYIRLILHLAFAIERIKEGITIENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEIGYIA 84
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
179-306 |
1.12e-08 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 58.17 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYaieigrfsFNAPYVIFNCAdyaenlqllvshlFGNVKgaftgaDIEKKglVDQA-----N 253
Cdd:PRK13342 40 ILWGPPGTGKTTLARIIAGA--------TDAPFEALSAV-------------TSGVK------DLREV--IEEArqrrsA 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 495235341 254 GG--ILFLDEVHRLPPEGQEMLFSLMDRGsyrrlgesentrkaDILIIAATTEDP 306
Cdd:PRK13342 91 GRrtILFIDEIHRFNKAQQDALLPHVEDG--------------TITLIGATTENP 131
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
177-277 |
1.44e-08 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 54.81 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 177 HTLLIGPTGIGKTTFAEIMyryAIEIGrfsfnapyvifncadyaenlqllvshlfGNVKgAFTGADIEKKG-----LVDQ 251
Cdd:pfam05496 35 HVLLYGPPGLGKTTLANII---ANEMG----------------------------VNIR-ITSGPAIERPGdlaaiLTNL 82
|
90 100
....*....|....*....|....*.
gi 495235341 252 ANGGILFLDEVHRLPPEGQEMLFSLM 277
Cdd:pfam05496 83 EPGDVLFIDEIHRLNRAVEEILYPAM 108
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
179-325 |
3.08e-08 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 52.98 E-value: 3.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYAieigrfsfNAPYVIFNCADyaenlqlLVSHLFG----NVKGAFTGAdiekkglvDQANG 254
Cdd:pfam00004 2 LLYGPPGTGKTTLAKAVAKEL--------GAPFIEISGSE-------LVSKYVGesekRLRELFEAA--------KKLAP 58
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 495235341 255 GILFLDEVHRLPPEGQEMLFSLMDRGS---YRRLgESENTRKADILIIAATTEDPKkvILGTLLRRIPVIIMLP 325
Cdd:pfam00004 59 CVIFIDEIDALAGSRGSGGDSESRRVVnqlLTEL-DGFTSSNSKVIVIAATNRPDK--LDPALLGRFDRIIEFP 129
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
279-378 |
4.06e-07 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 52.93 E-value: 4.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 279 RGSYRRLGESEnTRKADILIIAATTEDPKK-VILGT----LLRRIPVI-IMLPSLAERslKGRMTLICQFFREESVKI-- 350
Cdd:COG3604 164 EGEFERVGGDE-TIKVDVRIIAATNRDLEEeVAEGRfredLYYRLNVFpIRLPPLRER--REDIPLLAEHFLEKFSRRlg 240
|
90 100
....*....|....*....|....*...
gi 495235341 351 KIPVTVSKEVLKVLLIYKCPGNIGQLKN 378
Cdd:COG3604 241 KPILRLSPEALEALMAYPWPGNVRELEN 268
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
177-277 |
4.08e-07 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 52.78 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 177 HTLLIGPTGIGKTTFAEIMyryAIEIGRfsfnapyvifncadyaeNLQLLvshlfgnvkgafTGADIEKKG-----LVDQ 251
Cdd:COG2255 56 HVLLYGPPGLGKTTLAHII---ANEMGV-----------------NIRIT------------SGPAIEKPGdlaaiLTNL 103
|
90 100
....*....|....*....|....*.
gi 495235341 252 ANGGILFLDEVHRLPPEGQEMLFSLM 277
Cdd:COG2255 104 EEGDVLFIDEIHRLSRVVEEILYPAM 129
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
177-278 |
3.68e-06 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 49.74 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 177 HTLLIGPTGIGKTTFAEIMyryAIEIGRfsfnapyvifncadyaeNLQLLvshlfgnvkgafTGADIEKKGlvDQAN--- 253
Cdd:PRK00080 53 HVLLYGPPGLGKTTLANII---ANEMGV-----------------NIRIT------------SGPALEKPG--DLAAilt 98
|
90 100
....*....|....*....|....*....
gi 495235341 254 ----GGILFLDEVHRLPPEGQEMLFSLMD 278
Cdd:PRK00080 99 nleeGDVLFIDEIHRLSPVVEEILYPAME 127
|
|
| PRK15088 |
PRK15088 |
PTS system mannose-specific transporter subunits IIAB; Provisional |
625-744 |
2.43e-05 |
|
PTS system mannose-specific transporter subunits IIAB; Provisional
Pssm-ID: 185045 [Multi-domain] Cd Length: 322 Bit Score: 47.30 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 625 NIEVLVITHGyATATNMVQVAQTLLG-YECIHAIDMPLEEKVEVILNKATERVKKINKGRGVLLLVDMGSLTTF---SEI 700
Cdd:PRK15088 2 TIAIIIGTHG-WAAEQLLKTAEMLLGeQENVAWIDFVPGENAETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFnaaSRI 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 495235341 701 ISERTGIptRVVKMVSTPMVIEA--ARKAmlpNISLDMLV--------ESVKAM 744
Cdd:PRK15088 81 VVDKENY--EVITGVNIPMLVETfmARDD---DPSFDELVaialetgrEGVKAL 129
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
179-306 |
2.58e-05 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 48.13 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYaieigrfsFNAPYVIFNCADYAenlqllVSHLFGNVKGAftGADIEKKGLVDqanggILF 258
Cdd:PRK13341 56 ILYGPPGVGKTTLARIIANH--------TRAHFSSLNAVLAG------VKDLRAEVDRA--KERLERHGKRT-----ILF 114
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 495235341 259 LDEVHRLPPEGQEMLFSLMDRGsyrrlgesentrkaDILIIAATTEDP 306
Cdd:PRK13341 115 IDEVHRFNKAQQDALLPWVENG--------------TITLIGATTENP 148
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
182-306 |
1.04e-04 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 45.82 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 182 GPTGIGKTTFAEIMYRyaieigrfSFNAPYVIFNCAdyaenlqllvshlFGNVKgaftgaDIEKkgLVDQA-----NGG- 255
Cdd:COG2256 56 GPPGTGKTTLARLIAN--------ATDAEFVALSAV-------------TSGVK------DIRE--VIEEArerraYGRr 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 495235341 256 -ILFLDEVHRLPPEGQEMLFSLMDRGsyrrlgesentrkaDILIIAATTEDP 306
Cdd:COG2256 107 tILFVDEIHRFNKAQQDALLPHVEDG--------------TITLIGATTENP 144
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
148-330 |
2.66e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 40.64 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 148 FANIVGSKDDLK---------NQVKQARAAILYPPKglHTLLIGPTGIGKTTFAEIMyryAIEIGRfsfnaPYVIFNCAd 218
Cdd:COG1223 1 LDDVVGQEEAKKklkliikelRRRENLRKFGLWPPR--KILFYGPPGTGKTMLAEAL---AGELKL-----PLLTVRLD- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 219 yaenlqLLVSHLFGNvkgafTGADIEKkgLVDQAN--GGILFLDEVHRLPPEgqemLFSLMDRGSYRR-----LGESENt 291
Cdd:COG1223 70 ------SLIGSYLGE-----TARNLRK--LFDFARraPCVIFFDEFDAIAKD----RGDQNDVGEVKRvvnalLQELDG- 131
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 495235341 292 RKADILIIAATTEdpKKVILGTLLRRIPVII--MLPSLAER 330
Cdd:COG1223 132 LPSGSVVIAATNH--PELLDSALWRRFDEVIefPLPDKEER 170
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
766-874 |
4.10e-03 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 40.61 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 766 IIYQERAIAMLEEILTFLNVGKAS-RLLNEVLEKVADTCNGVIDESIRIKFLFHCSCMIERIIRNEPLPYTNFL--HIKE 842
Cdd:COG3711 155 LLSELLSENDLLSLLLLKLIPEEDlELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPLlwEIKK 234
|
90 100 110
....*....|....*....|....*....|..
gi 495235341 843 SKEslFKTIKDTFIIVEEAFGIEIPNTELAYV 874
Cdd:COG3711 235 PKE--YEIAKEILKLIEERLGISLPEDEIGYI 264
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
179-300 |
4.85e-03 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 40.31 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYAIEI-GRFSFNAPYVIFNCADYAENLQLLVsHLFGNVKGafTGADIEKKGL--------- 248
Cdd:TIGR02928 44 FIYGKTGTGKTAVTKYVMKELEEAaEDRDVRVVTVYVNCQILDTLYQVLV-ELANQLRG--SGEEVPTTGLstsevfrrl 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 495235341 249 ---VDQANGGILF-LDEVHRLPPEGQEMLFSLMdrgsyrRLGESENTRKADILIIA 300
Cdd:TIGR02928 121 ykeLNERGDSLIIvLDEIDYLVGDDDDLLYQLS------RARSNGDLDNAKVGVIG 170
|
|
| PRK09772 |
PRK09772 |
transcriptional antiterminator BglG; Provisional |
523-626 |
5.42e-03 |
|
transcriptional antiterminator BglG; Provisional
Pssm-ID: 170086 [Multi-domain] Cd Length: 278 Bit Score: 39.69 E-value: 5.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 523 EIVNIIEESLAESKEAMGLSFDSKVIySLALHMETLVERLRLGQISIHPNIKKIYEEHQQEFAIAERIKNKLEEKLPIHI 602
Cdd:PRK09772 71 EVMATCDRIISLAQERLGKLQDSIYI-SLTDHCQFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQL 149
|
90 100
....*....|....*....|....
gi 495235341 603 PDDEVAFTAMLLYSLHIKKSEENI 626
Cdd:PRK09772 150 PKDEVGFIAMHLVSAQMSGNMEDV 173
|
|
| AAA_2 |
pfam07724 |
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected ... |
179-302 |
7.91e-03 |
|
AAA domain (Cdc48 subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400187 [Multi-domain] Cd Length: 168 Bit Score: 38.33 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 179 LLIGPTGIGKTTFAEIMYRYaieigRFSFNAPYVIFNCADYAEnlQLLVSHLFGNvKGAFTGAdiEKKGL----VDQANG 254
Cdd:pfam07724 7 LFLGPTGVGKTELAKALAEL-----LFGDERALIRIDMSEYME--EHSVSRLIGA-PPGYVGY--EEGGQlteaVRRKPY 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 495235341 255 GILFLDEVHRLPPEGQEMLFSLMDRGsyrRLGESENtRKAD---ILIIAAT 302
Cdd:pfam07724 77 SIVLIDEIEKAHPGVQNDLLQILEGG---TLTDKQG-RTVDfknTLFIMTG 123
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
177-278 |
8.06e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 37.32 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495235341 177 HTLLIGPTGIGKTTFAEiMYRYAIEIGRFSFnapyVIFNCADYAENLQLLvSHLFGNVKG-AFTGADIEK------KGLV 249
Cdd:pfam13401 7 ILVLTGESGTGKTTLLR-RLLEQLPEVRDSV----VFVDLPSGTSPKDLL-RALLRALGLpLSGRLSKEEllaalqQLLL 80
|
90 100
....*....|....*....|....*....
gi 495235341 250 DQANGGILFLDEVHRLPPEGQEMLFSLMD 278
Cdd:pfam13401 81 ALAVAVVLIIDEAQHLSLEALEELRDLLN 109
|
|
| |
