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Concise Results
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Full Results
hypothetical protein [Pseudomonas sp. GM30]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
PRK09782 super family
cl35890 bacteriophage N4 receptor, outer membrane subunit; Provisional
27-1053
0e+00
bacteriophage N4 receptor, outer membrane subunit; Provisional
PRK09782 :Pssm-ID: 236624 [Multi-domain]
Cd Length: 987
Bit Score: 974.39
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 27 AP LSD FEQ F RS YP YM D RSYREA K KGNWKEVE R LMRHLLEK VP K N DEARAL L V E SLAKQRRYKD A VVA L P ---- ANDSE A T 102
Cdd:PRK09782 34 LG LSD YRH F VI YP RL D KALKAQ K NNDEATAI R EFEYIHQQ VP D N IPLTLY L A E AYRHFGHDDR A RLL L E dqlk RHPGD A R 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 103 L DLR L TW I EQDPP S S T Q VE QWM A TSDLN D R V RLWQAY S ------ L S LA KFGG A AKAHD w L A QL A PKGDDNI LR LARANWS 176
Cdd:PRK09782 114 L ERS L AA I PVEVK S V T T VE ELL A QQKAC D A V PTLRCR S evgqna L R LA QLPV A RAQLN - D A TF A ASPEGKT LR TDLLQRA 192
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 177 EQ L RD WS GTIEQLAPLAAR N Q L D A EGWQRLANAYVQRLDEKP L QQ L lq Q AP G PAAARKV R LAMVDRAIAM G HDQQA Q RW L 256
Cdd:PRK09782 193 IY L KQ WS QADTLYNEARQQ N T L S A AERRQWFDVLLAGQLDDR L LA L -- Q SQ G IFTDPQS R ITYATALAYR G EKARL Q HY L 270
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 257 QSLPAEDLA D PAQRQR L WE L ARQTDD ----- VPSVQRLSNDL Q RPCLE T ADW L SRHDPEA A LTQ lrscqpsddpqawlvl 331
Cdd:PRK09782 271 IENKPLFTT D AQEKSW L YL L SKYSAN pvqal ANYTVQFADNR Q YVVGA T LPV L LKEGQYD A AQK ---------------- 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 332 aqrlqatdllqsttlpqpwesrrqaqlldvwqeqgqsskvmv W LA GQ P QTPAVVK R R A QLAQ T MGRRTEEQTLWEYHYRQ 411
Cdd:PRK09782 335 ------------------------------------------ L LA TL P ANEMLEE R Y A VSVA T RNKAEALRLARLLYQQE 372
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 412 TGD L AS L N Q ASFLSLDS G DRAH A QE LL ENA Y DRF G - ARL PGSALQ RLA GIYA S ak ETTP A QQQRM A S L IRHIDG A TRG Q L 490
Cdd:PRK09782 373 PAN L TR L D Q LTWQLMQN G QSRE A AD LL LQR Y PFQ G d ARL SQTLMA RLA SLLE S -- HPYL A TPAKV A I L SKPLPL A EQR Q W 450
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 491 LA QL AEN - GQ C D A VQQA LG NHPQA -- A GDYRA L GR C AMPDR PG E A VV - YY Q QAEKLG D HSSRLPL AY ALEAAG D S A G ALA 566
Cdd:PRK09782 451 QS QL PGI a DN C P A IVRL LG DMSPS yd A AAWNR L AK C YRDTL PG V A LY a WL Q AEQRQP D AWQHRAV AY QAYQVE D Y A T ALA 530
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 567 I W RS I PAAEL S DNAR L T A SRS A LN A DDSQTAEGYW QQ SKA RG ANEW AL GAAIADA R --- G DHAQ AL QRQRQA L QQ AP D A G 643
Cdd:PRK09782 531 A W QK I SLHDM S NEDL L A A ANT A QA A GNGAARDRWL QQ AEQ RG LGDN AL YWWLHAQ R yip G QPEL AL NDLTRS L NI AP S A N 610
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 644 HFY A ASVTAQKAGDLAQSNAW L AE A VRR EP D N PR Y R A DY G MR L SGAPTREERAR aip Y L QQ A TRDF P E D YR L GET LA WRY 723
Cdd:PRK09782 611 AYV A RATIYRQRHNVPAAVSD L RA A LEL EP N N SN Y Q A AL G YA L WDSGDIAQSRE --- M L ER A HKGL P D D PA L IRQ LA YVN 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 724 DEVE D S A SARKEL R R VID LEQ N PVAADDEDGSMEAR R YRQ RR A HE TLS RR DS F TLA S T wsp A G VSTNDFLRDD N SK - G TR 802
Cdd:PRK09782 688 QRLD D M A ATQHYA R L VID DID N QALITPLTPEQNQQ R FNF RR L HE EVG RR WT F SFD S S --- I G LRSGAMSTAN N NV g G AA 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 803 RSA S SQNVQVAMWDHA LG EEPSRA G ST LSVY G RV L -- L G GQSRSSYAESAAA G V GLR Y KP WGT Q NIN L YA E iykqsqfde 880
Cdd:PRK09782 765 PGK S YRSYGQLEAEYR LG RNMLLE G DL LSVY S RV F ad T G ENGVMMPVKNPMS G T GLR W KP LRD Q IFF L AV E --------- 835
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 881 qdnhglslgqtinphkls D QL DDHR Q D G ht TT D YL LRA T ASF LDQ G Q Y RND W RVDE S D W DERF LYLDAA WW T KAGDHQ W L 960
Cdd:PRK09782 836 ------------------ Q QL PLNG Q N G -- AS D TM LRA S ASF FNG G K Y SDE W HPNG S G W FAQN LYLDAA QY T RQDIQA W T 895
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 961 SRFQQ gh A W KLPSNAA QT IM PY GFLE fasqdp S N DW R QDLRT ----- GVG L RW QW W YDDDR YNA YRS K LT V RT EYQ QSLG 1035
Cdd:PRK09782 896 ADYRV -- S W HQKVANG QT LE PY AHVQ ------ D N GY R DKGTQ gaqlg GVG V RW NI W TGETH YNA WPH K VS V GV EYQ HTFK 967
1050 1060
....*....|....*....|
gi 495240382 1036 G -- NLYDGG N GVL L GVEWNF 1053
Cdd:PRK09782 968 A in QRNGER N NAF L TIGVHW 987
Name
Accession
Description
Interval
E-value
PRK09782
PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
27-1053
0e+00
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain]
Cd Length: 987
Bit Score: 974.39
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 27 AP LSD FEQ F RS YP YM D RSYREA K KGNWKEVE R LMRHLLEK VP K N DEARAL L V E SLAKQRRYKD A VVA L P ---- ANDSE A T 102
Cdd:PRK09782 34 LG LSD YRH F VI YP RL D KALKAQ K NNDEATAI R EFEYIHQQ VP D N IPLTLY L A E AYRHFGHDDR A RLL L E dqlk RHPGD A R 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 103 L DLR L TW I EQDPP S S T Q VE QWM A TSDLN D R V RLWQAY S ------ L S LA KFGG A AKAHD w L A QL A PKGDDNI LR LARANWS 176
Cdd:PRK09782 114 L ERS L AA I PVEVK S V T T VE ELL A QQKAC D A V PTLRCR S evgqna L R LA QLPV A RAQLN - D A TF A ASPEGKT LR TDLLQRA 192
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 177 EQ L RD WS GTIEQLAPLAAR N Q L D A EGWQRLANAYVQRLDEKP L QQ L lq Q AP G PAAARKV R LAMVDRAIAM G HDQQA Q RW L 256
Cdd:PRK09782 193 IY L KQ WS QADTLYNEARQQ N T L S A AERRQWFDVLLAGQLDDR L LA L -- Q SQ G IFTDPQS R ITYATALAYR G EKARL Q HY L 270
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 257 QSLPAEDLA D PAQRQR L WE L ARQTDD ----- VPSVQRLSNDL Q RPCLE T ADW L SRHDPEA A LTQ lrscqpsddpqawlvl 331
Cdd:PRK09782 271 IENKPLFTT D AQEKSW L YL L SKYSAN pvqal ANYTVQFADNR Q YVVGA T LPV L LKEGQYD A AQK ---------------- 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 332 aqrlqatdllqsttlpqpwesrrqaqlldvwqeqgqsskvmv W LA GQ P QTPAVVK R R A QLAQ T MGRRTEEQTLWEYHYRQ 411
Cdd:PRK09782 335 ------------------------------------------ L LA TL P ANEMLEE R Y A VSVA T RNKAEALRLARLLYQQE 372
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 412 TGD L AS L N Q ASFLSLDS G DRAH A QE LL ENA Y DRF G - ARL PGSALQ RLA GIYA S ak ETTP A QQQRM A S L IRHIDG A TRG Q L 490
Cdd:PRK09782 373 PAN L TR L D Q LTWQLMQN G QSRE A AD LL LQR Y PFQ G d ARL SQTLMA RLA SLLE S -- HPYL A TPAKV A I L SKPLPL A EQR Q W 450
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 491 LA QL AEN - GQ C D A VQQA LG NHPQA -- A GDYRA L GR C AMPDR PG E A VV - YY Q QAEKLG D HSSRLPL AY ALEAAG D S A G ALA 566
Cdd:PRK09782 451 QS QL PGI a DN C P A IVRL LG DMSPS yd A AAWNR L AK C YRDTL PG V A LY a WL Q AEQRQP D AWQHRAV AY QAYQVE D Y A T ALA 530
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 567 I W RS I PAAEL S DNAR L T A SRS A LN A DDSQTAEGYW QQ SKA RG ANEW AL GAAIADA R --- G DHAQ AL QRQRQA L QQ AP D A G 643
Cdd:PRK09782 531 A W QK I SLHDM S NEDL L A A ANT A QA A GNGAARDRWL QQ AEQ RG LGDN AL YWWLHAQ R yip G QPEL AL NDLTRS L NI AP S A N 610
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 644 HFY A ASVTAQKAGDLAQSNAW L AE A VRR EP D N PR Y R A DY G MR L SGAPTREERAR aip Y L QQ A TRDF P E D YR L GET LA WRY 723
Cdd:PRK09782 611 AYV A RATIYRQRHNVPAAVSD L RA A LEL EP N N SN Y Q A AL G YA L WDSGDIAQSRE --- M L ER A HKGL P D D PA L IRQ LA YVN 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 724 DEVE D S A SARKEL R R VID LEQ N PVAADDEDGSMEAR R YRQ RR A HE TLS RR DS F TLA S T wsp A G VSTNDFLRDD N SK - G TR 802
Cdd:PRK09782 688 QRLD D M A ATQHYA R L VID DID N QALITPLTPEQNQQ R FNF RR L HE EVG RR WT F SFD S S --- I G LRSGAMSTAN N NV g G AA 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 803 RSA S SQNVQVAMWDHA LG EEPSRA G ST LSVY G RV L -- L G GQSRSSYAESAAA G V GLR Y KP WGT Q NIN L YA E iykqsqfde 880
Cdd:PRK09782 765 PGK S YRSYGQLEAEYR LG RNMLLE G DL LSVY S RV F ad T G ENGVMMPVKNPMS G T GLR W KP LRD Q IFF L AV E --------- 835
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 881 qdnhglslgqtinphkls D QL DDHR Q D G ht TT D YL LRA T ASF LDQ G Q Y RND W RVDE S D W DERF LYLDAA WW T KAGDHQ W L 960
Cdd:PRK09782 836 ------------------ Q QL PLNG Q N G -- AS D TM LRA S ASF FNG G K Y SDE W HPNG S G W FAQN LYLDAA QY T RQDIQA W T 895
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 961 SRFQQ gh A W KLPSNAA QT IM PY GFLE fasqdp S N DW R QDLRT ----- GVG L RW QW W YDDDR YNA YRS K LT V RT EYQ QSLG 1035
Cdd:PRK09782 896 ADYRV -- S W HQKVANG QT LE PY AHVQ ------ D N GY R DKGTQ gaqlg GVG V RW NI W TGETH YNA WPH K VS V GV EYQ HTFK 967
1050 1060
....*....|....*....|
gi 495240382 1036 G -- NLYDGG N GVL L GVEWNF 1053
Cdd:PRK09782 968 A in QRNGER N NAF L TIGVHW 987
NfrA_C
pfam13283 Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ...
847-1048
2.44e-19
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.
Pssm-ID: 433085
Cd Length: 173
Bit Score: 86.67
E-value: 2.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 847 AESAAA G V GLR Y KP WGT QN IN L Y AE iy KQSQFDE Q DNHG lslgqtinphklsdqlddhrqdghttt D Y LLRA TA S fldq G 926
Cdd:pfam13283 6 GDTTQG G L GLR W KP LSD QN LV L S AE -- RLFPIGG Q AREN --------------------------- D W LLRA GY S ---- G 52
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 927 Q Y RN D W RVD ESD W DERF LY LD A AWWTKAGDHQWLSRFQQ G HAWK L PSNAAQ - TIM PY GF L E f A SQ D PSNDWRQD L RT G V G 1005
Cdd:pfam13283 53 G Y GT D L RVD VPS W QTQQ LY AE A GRYLQQDRRYLTAEARL G RSYR L DDISSR l VVF PY AV L G - A DY D SAATRGFA L GA G P G 131
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 495240382 1006 L R W QW W YDD D R Y N A Y RS K L TVRTE Y QQS L G G N ly D G GNGV LLG 1048
Cdd:pfam13283 132 L A W RY W FRE D H Y H A P RS Y L DLTLQ Y RFK L A G D -- D R GNGV FAR 172
LapB
COG2956 Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
527-772
3.75e-04
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain]
Cd Length: 275
Bit Score: 43.56
E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 527 DR P GE A VVYYQQ A EK L -- GDHSSR L P L AYALEAA G DSAG A LA I WRS - IPAAELSDN A R L TASRSA L N A DDSQT AE GYWQQ 603
Cdd:COG2956 22 GQ P DK A IDLLEE A LE L dp ETVEAH L A L GNLYRRR G EYDR A IR I HQK l LERDPDRAE A L L ELAQDY L K A GLLDR AE ELLEK 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 604 --- SKARG A NEWA L G A A I ADAR GD HAQ A LQRQRQA L QQA P DAG H F Y A - ASVTAQKA GD LAQSNAW L AE A VRRE PD NP R YR 679
Cdd:COG2956 102 lle LDPDD A EALR L L A E I YEQE GD WEK A IEVLERL L KLG P ENA H A Y C e LAELYLEQ GD YDEAIEA L EK A LKLD PD CA R AL 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 680 ADYGMRLS gap TREERAR AI PY L QQ A TRDF P EDYRLGET LA WR Y DEVE D SAS A RKE LR RVID L EQNP v AADDEDGSMEA R 759
Cdd:COG2956 182 LLLAELYL --- EQGDYEE AI AA L ER A LEQD P DYLPALPR LA EL Y EKLG D PEE A LEL LR KALE L DPSD - DLLLALADLLE R 257
250
....*....|...
gi 495240382 760 RYRQRR A HET L S R 772
Cdd:COG2956 258 KEGLEA A LAL L E R 270
Name
Accession
Description
Interval
E-value
PRK09782
PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
27-1053
0e+00
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain]
Cd Length: 987
Bit Score: 974.39
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 27 AP LSD FEQ F RS YP YM D RSYREA K KGNWKEVE R LMRHLLEK VP K N DEARAL L V E SLAKQRRYKD A VVA L P ---- ANDSE A T 102
Cdd:PRK09782 34 LG LSD YRH F VI YP RL D KALKAQ K NNDEATAI R EFEYIHQQ VP D N IPLTLY L A E AYRHFGHDDR A RLL L E dqlk RHPGD A R 113
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 103 L DLR L TW I EQDPP S S T Q VE QWM A TSDLN D R V RLWQAY S ------ L S LA KFGG A AKAHD w L A QL A PKGDDNI LR LARANWS 176
Cdd:PRK09782 114 L ERS L AA I PVEVK S V T T VE ELL A QQKAC D A V PTLRCR S evgqna L R LA QLPV A RAQLN - D A TF A ASPEGKT LR TDLLQRA 192
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 177 EQ L RD WS GTIEQLAPLAAR N Q L D A EGWQRLANAYVQRLDEKP L QQ L lq Q AP G PAAARKV R LAMVDRAIAM G HDQQA Q RW L 256
Cdd:PRK09782 193 IY L KQ WS QADTLYNEARQQ N T L S A AERRQWFDVLLAGQLDDR L LA L -- Q SQ G IFTDPQS R ITYATALAYR G EKARL Q HY L 270
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 257 QSLPAEDLA D PAQRQR L WE L ARQTDD ----- VPSVQRLSNDL Q RPCLE T ADW L SRHDPEA A LTQ lrscqpsddpqawlvl 331
Cdd:PRK09782 271 IENKPLFTT D AQEKSW L YL L SKYSAN pvqal ANYTVQFADNR Q YVVGA T LPV L LKEGQYD A AQK ---------------- 334
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 332 aqrlqatdllqsttlpqpwesrrqaqlldvwqeqgqsskvmv W LA GQ P QTPAVVK R R A QLAQ T MGRRTEEQTLWEYHYRQ 411
Cdd:PRK09782 335 ------------------------------------------ L LA TL P ANEMLEE R Y A VSVA T RNKAEALRLARLLYQQE 372
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 412 TGD L AS L N Q ASFLSLDS G DRAH A QE LL ENA Y DRF G - ARL PGSALQ RLA GIYA S ak ETTP A QQQRM A S L IRHIDG A TRG Q L 490
Cdd:PRK09782 373 PAN L TR L D Q LTWQLMQN G QSRE A AD LL LQR Y PFQ G d ARL SQTLMA RLA SLLE S -- HPYL A TPAKV A I L SKPLPL A EQR Q W 450
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 491 LA QL AEN - GQ C D A VQQA LG NHPQA -- A GDYRA L GR C AMPDR PG E A VV - YY Q QAEKLG D HSSRLPL AY ALEAAG D S A G ALA 566
Cdd:PRK09782 451 QS QL PGI a DN C P A IVRL LG DMSPS yd A AAWNR L AK C YRDTL PG V A LY a WL Q AEQRQP D AWQHRAV AY QAYQVE D Y A T ALA 530
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 567 I W RS I PAAEL S DNAR L T A SRS A LN A DDSQTAEGYW QQ SKA RG ANEW AL GAAIADA R --- G DHAQ AL QRQRQA L QQ AP D A G 643
Cdd:PRK09782 531 A W QK I SLHDM S NEDL L A A ANT A QA A GNGAARDRWL QQ AEQ RG LGDN AL YWWLHAQ R yip G QPEL AL NDLTRS L NI AP S A N 610
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 644 HFY A ASVTAQKAGDLAQSNAW L AE A VRR EP D N PR Y R A DY G MR L SGAPTREERAR aip Y L QQ A TRDF P E D YR L GET LA WRY 723
Cdd:PRK09782 611 AYV A RATIYRQRHNVPAAVSD L RA A LEL EP N N SN Y Q A AL G YA L WDSGDIAQSRE --- M L ER A HKGL P D D PA L IRQ LA YVN 687
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 724 DEVE D S A SARKEL R R VID LEQ N PVAADDEDGSMEAR R YRQ RR A HE TLS RR DS F TLA S T wsp A G VSTNDFLRDD N SK - G TR 802
Cdd:PRK09782 688 QRLD D M A ATQHYA R L VID DID N QALITPLTPEQNQQ R FNF RR L HE EVG RR WT F SFD S S --- I G LRSGAMSTAN N NV g G AA 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 803 RSA S SQNVQVAMWDHA LG EEPSRA G ST LSVY G RV L -- L G GQSRSSYAESAAA G V GLR Y KP WGT Q NIN L YA E iykqsqfde 880
Cdd:PRK09782 765 PGK S YRSYGQLEAEYR LG RNMLLE G DL LSVY S RV F ad T G ENGVMMPVKNPMS G T GLR W KP LRD Q IFF L AV E --------- 835
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 881 qdnhglslgqtinphkls D QL DDHR Q D G ht TT D YL LRA T ASF LDQ G Q Y RND W RVDE S D W DERF LYLDAA WW T KAGDHQ W L 960
Cdd:PRK09782 836 ------------------ Q QL PLNG Q N G -- AS D TM LRA S ASF FNG G K Y SDE W HPNG S G W FAQN LYLDAA QY T RQDIQA W T 895
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 961 SRFQQ gh A W KLPSNAA QT IM PY GFLE fasqdp S N DW R QDLRT ----- GVG L RW QW W YDDDR YNA YRS K LT V RT EYQ QSLG 1035
Cdd:PRK09782 896 ADYRV -- S W HQKVANG QT LE PY AHVQ ------ D N GY R DKGTQ gaqlg GVG V RW NI W TGETH YNA WPH K VS V GV EYQ HTFK 967
1050 1060
....*....|....*....|
gi 495240382 1036 G -- NLYDGG N GVL L GVEWNF 1053
Cdd:PRK09782 968 A in QRNGER N NAF L TIGVHW 987
NfrA_C
pfam13283 Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is ...
847-1048
2.44e-19
Bacteriophage N adsorption protein A C-term; The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.
Pssm-ID: 433085
Cd Length: 173
Bit Score: 86.67
E-value: 2.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 847 AESAAA G V GLR Y KP WGT QN IN L Y AE iy KQSQFDE Q DNHG lslgqtinphklsdqlddhrqdghttt D Y LLRA TA S fldq G 926
Cdd:pfam13283 6 GDTTQG G L GLR W KP LSD QN LV L S AE -- RLFPIGG Q AREN --------------------------- D W LLRA GY S ---- G 52
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 927 Q Y RN D W RVD ESD W DERF LY LD A AWWTKAGDHQWLSRFQQ G HAWK L PSNAAQ - TIM PY GF L E f A SQ D PSNDWRQD L RT G V G 1005
Cdd:pfam13283 53 G Y GT D L RVD VPS W QTQQ LY AE A GRYLQQDRRYLTAEARL G RSYR L DDISSR l VVF PY AV L G - A DY D SAATRGFA L GA G P G 131
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 495240382 1006 L R W QW W YDD D R Y N A Y RS K L TVRTE Y QQS L G G N ly D G GNGV LLG 1048
Cdd:pfam13283 132 L A W RY W FRE D H Y H A P RS Y L DLTLQ Y RFK L A G D -- D R GNGV FAR 172
LapB
COG2956 Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
527-772
3.75e-04
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain]
Cd Length: 275
Bit Score: 43.56
E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 527 DR P GE A VVYYQQ A EK L -- GDHSSR L P L AYALEAA G DSAG A LA I WRS - IPAAELSDN A R L TASRSA L N A DDSQT AE GYWQQ 603
Cdd:COG2956 22 GQ P DK A IDLLEE A LE L dp ETVEAH L A L GNLYRRR G EYDR A IR I HQK l LERDPDRAE A L L ELAQDY L K A GLLDR AE ELLEK 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 604 --- SKARG A NEWA L G A A I ADAR GD HAQ A LQRQRQA L QQA P DAG H F Y A - ASVTAQKA GD LAQSNAW L AE A VRRE PD NP R YR 679
Cdd:COG2956 102 lle LDPDD A EALR L L A E I YEQE GD WEK A IEVLERL L KLG P ENA H A Y C e LAELYLEQ GD YDEAIEA L EK A LKLD PD CA R AL 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 680 ADYGMRLS gap TREERAR AI PY L QQ A TRDF P EDYRLGET LA WR Y DEVE D SAS A RKE LR RVID L EQNP v AADDEDGSMEA R 759
Cdd:COG2956 182 LLLAELYL --- EQGDYEE AI AA L ER A LEQD P DYLPALPR LA EL Y EKLG D PEE A LEL LR KALE L DPSD - DLLLALADLLE R 257
250
....*....|...
gi 495240382 760 RYRQRR A HET L S R 772
Cdd:COG2956 258 KEGLEA A LAL L E R 270
HemYx
COG3071 Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
150-339
4.95e-04
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain]
Cd Length: 323
Bit Score: 43.36
E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 150 AKAHDW LAQ LAPKGDDNI L -- R L A RA NWSEQLRDWSGTIEQ L AP L A A RNQLDAEGWQR L AN AY V Q RL D EKP L QQ LL QQA - 226
Cdd:COG3071 67 ERRDEY LAQ ALELAPEAE L av L L T RA ELLLDQGQAEQALAT L EA L R A GAPRHPQVLRL L LQ AY R Q LG D WEE L LE LL PAL r 146
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 227 ----- PGPA A ARKV R L A MVDRAIAMGH D QQ A - QRWLQS LP AEDLA DP AQRQRLWELARQTD D VPSVQ RL sndlqrpc L ET 300
Cdd:COG3071 147 khkal SAEE A QALE R R A YLGLLRQAAR D AE A l KALWKA LP RAERR DP ELAAAYARALIALG D HDEAE RL -------- L RE 218
170 180 190
....*....|....*....|....*....|....*....
gi 495240382 301 A dw L S R HDPEAALTQLRSC Q P s D DP QAW L VL A QRLQATD 339
Cdd:COG3071 219 A -- L K R QWDPRLVRLYGRL Q G - G DP AKQ L KR A EKWLKKH 254
BepA
COG4783 Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
646-772
1.45e-03
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain]
Cd Length: 139
Bit Score: 40.18
E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 646 YA ASVTAQK AGD LAQSN A W L AE A VRRE PDNP RYR A DY G MR L S gap TREERAR AI PY L QQ A TRDF P EDYRLGET L AWRYDE 725
Cdd:COG4783 8 YA LAQALLL AGD YDEAE A L L EK A LELD PDNP EAF A LL G EI L L --- QLGDLDE AI VL L HE A LELD P DEPEARLN L GLALLK 84
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 495240382 726 VE D SAS A RKE L RRVID L EQNPVA A DDEDGSMEARRY R QRR A HET L SR 772
Cdd:COG4783 85 AG D YDE A LAL L EKALK L DPEHPE A YLRLARAYRALG R PDE A IAA L EK 131
LpoA
COG3107 Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope ...
168-365
2.77e-03
Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442341 [Multi-domain]
Cd Length: 610
Bit Score: 41.49
E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 168 L RL A RANWS E QLR D W sgtie QL ap LAAR NQ L DAEGWQR l A N A YVQR L DEKP L qqllqqap G P AAARKVR L AMVDR A I A M G 247
Cdd:COG3107 53 L QQ A EQSQP E EKA D Y ----- QL -- LAAR AL L QEGQLAQ - A R A LLAQ L PPQQ L -------- S P EQQLEYQ L LLAEL A L A Q G 116
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 248 HDQQ A QRW L QS L PAED L a D P A Q RQ R LWE L ---- AR Q TD D VPSVQ R LSND L QRPCLETADWLSRH D --------- P E A A L T 314
Cdd:COG3107 117 DPEA A LAL L SQ L SLAS L - S P E Q QA R YYQ L raqa YE Q QG D PLAAA R ARIA L EPLLTDGQARQENQ D qiwqllsql P P A Q L Q 195
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 495240382 315 Q L RSCQPSDDP Q A WL V LA Q rlqatdl LQSTTLPQ P wes RRQA Q L L DV WQ EQ 365
Cdd:COG3107 196 S L AINADEPVL Q G WL E LA L ------- IYRQNGGD P --- DQLQ Q A L ND WQ QR 236
LapB
COG2956 Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
49-259
2.77e-03
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain]
Cd Length: 275
Bit Score: 40.87
E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 49 K K G NWKEV E R L MRH LLE KV P KND EA RA LL V E SLAKQRRYKD A VVA lpandseatldlr L TWIEQDP P SSTQV eqwmatsd 128
Cdd:COG2956 88 K A G LLDRA E E L LEK LLE LD P DDA EA LR LL A E IYEQEGDWEK A IEV ------------- L ERLLKLG P ENAHA -------- 146
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 129 lnd RVR L WQA Y SLS lakf G GAAK A HDW L AQLAPKGD D NI - LR L AR A NWSEQLR D WSGT I EQ L APLAARNQLDAEGWQ RLA 207
Cdd:COG2956 147 --- YCE L AEL Y LEQ ---- G DYDE A IEA L EKALKLDP D CA r AL L LL A ELYLEQG D YEEA I AA L ERALEQDPDYLPALP RLA 219
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 495240382 208 NA Y VQRL D EKPLQQ LL QQ A PGPAAARKVR LA MV D RAIAMGHDQQ A QRW L QSL 259
Cdd:COG2956 220 EL Y EKLG D PEEALE LL RK A LELDPSDDLL LA LA D LLERKEGLEA A LAL L ERQ 271
BepA
COG4783 Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
641-745
4.11e-03
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain]
Cd Length: 139
Bit Score: 38.63
E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495240382 641 DAGH F YAASVTAQKA GDL AQSNAW L A EA VRRE PD N P RY R ADY G MR L SG A ptr EERAR A IPY L QQ A TRDF PE DYRLGET LA 720
Cdd:COG4783 37 NPEA F ALLGEILLQL GDL DEAIVL L H EA LELD PD E P EA R LNL G LA L LK A --- GDYDE A LAL L EK A LKLD PE HPEAYLR LA 113
90 100
....*....|....*....|....*
gi 495240382 721 WR Y DEVEDSAS A RKE L RRVID L EQN 745
Cdd:COG4783 114 RA Y RALGRPDE A IAA L EKALE L DPD 138
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
