NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|495424287|ref|WP_008148984|]
View 

4'-phosphopantetheinyl transferase superfamily protein [Parabacteroides johnsonii]

Protein Classification

4'-phosphopantetheinyl transferase family protein( domain architecture ID 11450000)

4-phosphopantetheinyl transferase family protein containing an ACPS (holo-[ACP] synthase) domain; ACPS transfers the 4'-phosphopantetheine moiety from coenzyme A to a serine of an acyl-carrier-protein (ACP)

CATH:  3.90.470.20
EC:  2.7.8.7
Gene Ontology:  GO:0008897
PubMed:  8939709

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Sfp COG2091
Phosphopantetheinyl transferase [Coenzyme transport and metabolism];
11-154 1.57e-31

Phosphopantetheinyl transferase [Coenzyme transport and metabolism];


:

Pssm-ID: 441694  Cd Length: 177  Bit Score: 112.75  E-value: 1.57e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  11 LWGIWKIEEPSEVLFALLQnrKEYLPQLELIRTEQRRREWLASRVLLQELTGG-------SALIAYHPNGAPYLSGSSLH 83
Cdd:COG2091   12 VWFIRLDEEDLDELLALLS--EDERARAARFRSEKRRRRFLAGRALLRELLARllglppaDLEFAYDPHGKPYLADPGLH 89
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495424287  84 ISISHTKGYAAVLLQDHPAAGIDIEYRSERVS-RIRSRFMNPEEEAGIDK---EYETEHLLLHWCAKETLFKMVG 154
Cdd:COG2091   90 FSLSHSGGLAAVAVSRGGPVGVDIERIRPRIDlALARRFFSPEERAWLAAlpqDDRLEAFTRLWTLKEALLKATG 164
 
Name Accession Description Interval E-value
Sfp COG2091
Phosphopantetheinyl transferase [Coenzyme transport and metabolism];
11-154 1.57e-31

Phosphopantetheinyl transferase [Coenzyme transport and metabolism];


Pssm-ID: 441694  Cd Length: 177  Bit Score: 112.75  E-value: 1.57e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  11 LWGIWKIEEPSEVLFALLQnrKEYLPQLELIRTEQRRREWLASRVLLQELTGG-------SALIAYHPNGAPYLSGSSLH 83
Cdd:COG2091   12 VWFIRLDEEDLDELLALLS--EDERARAARFRSEKRRRRFLAGRALLRELLARllglppaDLEFAYDPHGKPYLADPGLH 89
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495424287  84 ISISHTKGYAAVLLQDHPAAGIDIEYRSERVS-RIRSRFMNPEEEAGIDK---EYETEHLLLHWCAKETLFKMVG 154
Cdd:COG2091   90 FSLSHSGGLAAVAVSRGGPVGVDIERIRPRIDlALARRFFSPEERAWLAAlpqDDRLEAFTRLWTLKEALLKATG 164
PRK10351 PRK10351
4'-phosphopantetheinyl transferase AcpT;
46-154 1.97e-09

4'-phosphopantetheinyl transferase AcpT;


Pssm-ID: 182399 [Multi-domain]  Cd Length: 187  Bit Score: 54.84  E-value: 1.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  46 RRREWLASRVLLQELTGGSALIAYHPNGAPYLS-GSSLHISISHTKGYAAVLLQDHPAAGIDIEyrservsRIRSR---- 120
Cdd:PRK10351  22 RRARWLAGRVLLSHALSPLPEIIYGEQGKPAFApETPLWFNLSHSGDDIALLLSDEGEVGCDIE-------VIRPRanwr 94
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 495424287 121 -----FMNPEEEAGIDKEYETEHLLLH---WCAKETLFKMVG 154
Cdd:PRK10351  95 slanaVFSLGEHAEMDAVHPEQQLEAFwriWTRKEAIVKQRG 136
ACPS pfam01648
4'-phosphopantetheinyl transferase superfamily; Members of this family transfers the 4 ...
104-203 7.25e-09

4'-phosphopantetheinyl transferase superfamily; Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pfam00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP. This superfamily consists of two subtypes: The ACPS type and the Sfp type. The structure of the Sfp type is known, which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.


Pssm-ID: 426364 [Multi-domain]  Cd Length: 111  Bit Score: 51.84  E-value: 7.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  104 GIDIEYRSE-------RVSRIRSRFMNPEEEAGIDK--EYETEHLLLHWCAKETLFKMVGyEEVDFLRHLHVCPFPYAEK 174
Cdd:pfam01648   3 GIDIEEIARirrpierLGERLAERIFTPEERALLASlpAEARRAFARLWTAKEAVFKALG-PGLSKLLDFDDIEVLLDPD 81
                          90       100
                  ....*....|....*....|....*....
gi 495424287  175 GSFTVYETRTGEGTVYRLnYLVTPDFVLT 203
Cdd:pfam01648  82 GRPTLRLLGEAADLAWRF-EVLAGDYALA 109
acpS TIGR00516
holo-[acyl-carrier-protein] synthase; Formerly dpj. This enzyme adds the prosthetic group, ...
42-94 1.23e-03

holo-[acyl-carrier-protein] synthase; Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273114 [Multi-domain]  Cd Length: 121  Bit Score: 37.36  E-value: 1.23e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495424287   42 RTEQRRREWLASRVLLQEL------TG-GSAL------IAYHPNGAP----------YLSGSSLHISISHTKGYAA 94
Cdd:TIGR00516  39 KSEKRKNEFIAGFFAAKEAcskafgTGiGKELsfldieIRKDPKGAPlitlskeicdKFNIAALHASISHDAEFAA 114
 
Name Accession Description Interval E-value
Sfp COG2091
Phosphopantetheinyl transferase [Coenzyme transport and metabolism];
11-154 1.57e-31

Phosphopantetheinyl transferase [Coenzyme transport and metabolism];


Pssm-ID: 441694  Cd Length: 177  Bit Score: 112.75  E-value: 1.57e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  11 LWGIWKIEEPSEVLFALLQnrKEYLPQLELIRTEQRRREWLASRVLLQELTGG-------SALIAYHPNGAPYLSGSSLH 83
Cdd:COG2091   12 VWFIRLDEEDLDELLALLS--EDERARAARFRSEKRRRRFLAGRALLRELLARllglppaDLEFAYDPHGKPYLADPGLH 89
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 495424287  84 ISISHTKGYAAVLLQDHPAAGIDIEYRSERVS-RIRSRFMNPEEEAGIDK---EYETEHLLLHWCAKETLFKMVG 154
Cdd:COG2091   90 FSLSHSGGLAAVAVSRGGPVGVDIERIRPRIDlALARRFFSPEERAWLAAlpqDDRLEAFTRLWTLKEALLKATG 164
EntD COG2977
4'-phosphopantetheinyl transferase EntD (siderophore biosynthesis) [Secondary metabolites ...
44-203 5.86e-19

4'-phosphopantetheinyl transferase EntD (siderophore biosynthesis) [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 442216 [Multi-domain]  Cd Length: 205  Bit Score: 80.73  E-value: 5.86e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  44 EQRRREWLASRVL----LQELTGGSALIAYHPNGAP----YLSGSslhisISHTKGYAAVLLQDHPAA---GIDIEYR-- 110
Cdd:COG2977   25 PKRRAEFLAGRLCarraLAELGVPPAPILIGEDRAPlwpaGVVGS-----ISHSDGYAAAVVAPASDVrglGIDIEPLld 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287 111 SERVSRIRSRFMNPEEEAGIDK--EYETEHLL-LHWCAKETLFK--------MVGYEEVDFLrhlhvcpFPYAEKGSFTV 179
Cdd:COG2977  100 EPLAEELLPSILTPAERALLAAlsPLPFAHALtLLFSAKESLYKalyplvgrYFGFDDAELV-------ALDPEAGTFTL 172
                        170       180
                 ....*....|....*....|....*....
gi 495424287 180 YETRT-----GEGTVYRLNYLVTPDFVLT 203
Cdd:COG2977  173 RLLQDlspgfPAGRRFEGRFALRDGLVLT 201
PRK10351 PRK10351
4'-phosphopantetheinyl transferase AcpT;
46-154 1.97e-09

4'-phosphopantetheinyl transferase AcpT;


Pssm-ID: 182399 [Multi-domain]  Cd Length: 187  Bit Score: 54.84  E-value: 1.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  46 RRREWLASRVLLQELTGGSALIAYHPNGAPYLS-GSSLHISISHTKGYAAVLLQDHPAAGIDIEyrservsRIRSR---- 120
Cdd:PRK10351  22 RRARWLAGRVLLSHALSPLPEIIYGEQGKPAFApETPLWFNLSHSGDDIALLLSDEGEVGCDIE-------VIRPRanwr 94
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 495424287 121 -----FMNPEEEAGIDKEYETEHLLLH---WCAKETLFKMVG 154
Cdd:PRK10351  95 slanaVFSLGEHAEMDAVHPEQQLEAFwriWTRKEAIVKQRG 136
ACPS pfam01648
4'-phosphopantetheinyl transferase superfamily; Members of this family transfers the 4 ...
104-203 7.25e-09

4'-phosphopantetheinyl transferase superfamily; Members of this family transfers the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pfam00550. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP. This superfamily consists of two subtypes: The ACPS type and the Sfp type. The structure of the Sfp type is known, which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion.


Pssm-ID: 426364 [Multi-domain]  Cd Length: 111  Bit Score: 51.84  E-value: 7.25e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495424287  104 GIDIEYRSE-------RVSRIRSRFMNPEEEAGIDK--EYETEHLLLHWCAKETLFKMVGyEEVDFLRHLHVCPFPYAEK 174
Cdd:pfam01648   3 GIDIEEIARirrpierLGERLAERIFTPEERALLASlpAEARRAFARLWTAKEAVFKALG-PGLSKLLDFDDIEVLLDPD 81
                          90       100
                  ....*....|....*....|....*....
gi 495424287  175 GSFTVYETRTGEGTVYRLnYLVTPDFVLT 203
Cdd:pfam01648  82 GRPTLRLLGEAADLAWRF-EVLAGDYALA 109
4PPT_N pfam17837
4'-phosphopantetheinyl transferase N-terminal domain; This entry represents the N-terminal ...
39-97 5.35e-05

4'-phosphopantetheinyl transferase N-terminal domain; This entry represents the N-terminal domain from 4'- phosphopantetheinyl transferase enzymes. This domain is structurally related to the pfam01648 domain with which it forms a pseudodimeric arrangement.


Pssm-ID: 465526 [Multi-domain]  Cd Length: 68  Bit Score: 39.92  E-value: 5.35e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 495424287   39 ELIR--TEQRRREWLASRV----LLQELTGGSALIAYHPNGAPY----LSGSslhisISHTKGYAAVLL 97
Cdd:pfam17837   4 ALIAqaVPKRRAEFLAGRIcarrALAALGIPPVPLLSGEDRAPVwpagVVGS-----ISHTDGLAAAAV 67
acpS TIGR00516
holo-[acyl-carrier-protein] synthase; Formerly dpj. This enzyme adds the prosthetic group, ...
42-94 1.23e-03

holo-[acyl-carrier-protein] synthase; Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins. [Fatty acid and phospholipid metabolism, Biosynthesis]


Pssm-ID: 273114 [Multi-domain]  Cd Length: 121  Bit Score: 37.36  E-value: 1.23e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495424287   42 RTEQRRREWLASRVLLQEL------TG-GSAL------IAYHPNGAP----------YLSGSSLHISISHTKGYAA 94
Cdd:TIGR00516  39 KSEKRKNEFIAGFFAAKEAcskafgTGiGKELsfldieIRKDPKGAPlitlskeicdKFNIAALHASISHDAEFAA 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH