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Conserved domains on  [gi|495651880|ref|WP_008376459|]
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MULTISPECIES: preprotein translocase subunit YajC [Enterococcus]

Protein Classification

preprotein translocase subunit YajC( domain architecture ID 10004811)

preprotein translocase subunit YajC forms a complex with SecD and SecF and plays a role in stabilizing and regulating secretion through the SecYEG transmembrane complex via SecA

Gene Ontology:  GO:0015031|GO:0005886
PubMed:  20801097|10066476|12068816|9305629|23337498

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YajC COG1862
Protein translocase subunit YajC [Intracellular trafficking, secretion, and vesicular ...
 32-90 1.64e-12

Protein translocase subunit YajC [Intracellular trafficking, secretion, and vesicular transport];


:

Pssm-ID: 441467  Cd Length: 102  Bit Score: 57.88  E-value: 1.64e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495651880  32 KKQKGYFAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEIM 90
Cdd:COG1862   36 QKRQKEHKEMLSSLKKGDEVVTIGGIHGTVVKVDDDTVTLEIADGVKVKVERSAIARVL 94
 
Name Accession Description Interval E-value
YajC COG1862
Protein translocase subunit YajC [Intracellular trafficking, secretion, and vesicular ...
 32-90 1.64e-12

Protein translocase subunit YajC [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441467  Cd Length: 102  Bit Score: 57.88  E-value: 1.64e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495651880  32 KKQKGYFAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEIM 90
Cdd:COG1862   36 QKRQKEHKEMLSSLKKGDEVVTIGGIHGTVVKVDDDTVTLEIADGVKVKVERSAIARVL 94
YajC pfam02699
Preprotein translocase subunit; See.
 32-88 1.08e-11

Preprotein translocase subunit; See.


Pssm-ID: 460655  Cd Length: 78  Bit Score: 55.10  E-value: 1.08e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 495651880  32 KKQKGYFAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAE 88
Cdd:pfam02699 22 QKRQKEHQEMLDSLKKGDEVVTIGGIHGKVVKVDDDEVTLEIAAGVKIKVERSAIAE 78
yajC PRK05585
preprotein translocase subunit YajC; Validated
 32-91 1.61e-06

preprotein translocase subunit YajC; Validated


Pssm-ID: 235518  Cd Length: 106  Bit Score: 42.58  E-value: 1.61e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 495651880  32 KKQKGYfAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEIMQ 91
Cdd:PRK05585  41 KRQKEH-KKMLSSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQKSAIAAVLP 99
yajC TIGR00739
preprotein translocase, YajC subunit; While this protein is part of the preprotein translocase ...
 40-89 3.72e-06

preprotein translocase, YajC subunit; While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273243  Cd Length: 84  Bit Score: 41.13  E-value: 3.72e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 495651880  40 ELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEI 89
Cdd:TIGR00739 33 KLIESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITFSKNAIVEV 82
 
Name Accession Description Interval E-value
YajC COG1862
Protein translocase subunit YajC [Intracellular trafficking, secretion, and vesicular ...
 32-90 1.64e-12

Protein translocase subunit YajC [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441467  Cd Length: 102  Bit Score: 57.88  E-value: 1.64e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 495651880  32 KKQKGYFAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEIM 90
Cdd:COG1862   36 QKRQKEHKEMLSSLKKGDEVVTIGGIHGTVVKVDDDTVTLEIADGVKVKVERSAIARVL 94
YajC pfam02699
Preprotein translocase subunit; See.
 32-88 1.08e-11

Preprotein translocase subunit; See.


Pssm-ID: 460655  Cd Length: 78  Bit Score: 55.10  E-value: 1.08e-11
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 495651880  32 KKQKGYFAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAE 88
Cdd:pfam02699 22 QKRQKEHQEMLDSLKKGDEVVTIGGIHGKVVKVDDDEVTLEIAAGVKIKVERSAIAE 78
yajC PRK05585
preprotein translocase subunit YajC; Validated
 32-91 1.61e-06

preprotein translocase subunit YajC; Validated


Pssm-ID: 235518  Cd Length: 106  Bit Score: 42.58  E-value: 1.61e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 495651880  32 KKQKGYfAELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEIMQ 91
Cdd:PRK05585  41 KRQKEH-KKMLSSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKIQKSAIAAVLP 99
yajC TIGR00739
preprotein translocase, YajC subunit; While this protein is part of the preprotein translocase ...
 40-89 3.72e-06

preprotein translocase, YajC subunit; While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 273243  Cd Length: 84  Bit Score: 41.13  E-value: 3.72e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 495651880  40 ELQQSLKKGQKIKLYGGIIGEIQALGKETVDLRVKSGTVIEVERSAVAEI 89
Cdd:TIGR00739 33 KLIESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITFSKNAIVEV 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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