|
Name |
Accession |
Description |
Interval |
E-value |
| chlor_reg_RclR |
NF040475 |
reactive chlorine-specific transcriptional regulator RclR; |
1-284 |
0e+00 |
|
reactive chlorine-specific transcriptional regulator RclR;
Pssm-ID: 439702 [Multi-domain] Cd Length: 284 Bit Score: 522.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 1 MDPLSQLMAFSAPQGSIDKNCLLSSGWSLPHAAGSLATIRWHTVTQGAAWLELPAGEKLTLLPGQVVVLTQNSAHRLRQK 80
Cdd:NF040475 1 MDALSRLLMLNAPQGSIDKNCLLSSDWQLPHAAGELSVIRWHTVTQGAAWLEMPTGEALTLRPGQVVILPQNSAHRLRQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 81 GQEETWIVCGSLHLSSASRHFLTALPEALLMAPEQDSPEHTWLLAAVALLQQEAEVPQPGMAAVCSQQCATMIALGLRQW 160
Cdd:NF040475 81 GEEETHIVCGSLRLQTSSRYFLTALPEVLLLAPEQNSPESHWLLAAIALLQQEAESPQPGMDALCSQQCATMFTLAVREW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 161 LRVNIQDKSQLNLLLHPRLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSR 240
Cdd:NF040475 161 LRQNTQAKSVLNLLLHPRLGAVIQSMLESPAHPWTVESLAQRVHMSRASFAQLFREVSGTTPLAVLTRLRLQIAAQMLSR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 495729166 241 EASSIITIADAVGYASESSFHKAFMREFGCSPGEYRKRVKALAM 284
Cdd:NF040475 241 EALPVIVIAESVGYASESSFHKAFVREFGCTPGEYRRRVKALAM 284
|
|
| cupin_YkgD-like_N |
cd06995 |
AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin ... |
2-79 |
5.70e-30 |
|
AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin domain; This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is YkgD, an uncharacterized Escherichia coli protein thought to be a transcriptional regulator. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380399 Cd Length: 114 Bit Score: 109.34 E-value: 5.70e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495729166 2 DPLSQLMAFSAPQGSIDKNCLLSSGWSLPHAAGSLATIRWHTVTQGAAWLELPAGEKLTLLPGQVVVLTQNSAHRLRQ 79
Cdd:cd06995 1 DALDRLIQLANVQGRLDLRCQLQGDWQLDHPAGPLGEARFHIVLQGECRLELPGGESLTLSPGDVVLLPQGSAHRLHS 78
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
193-276 |
4.68e-29 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 105.71 E-value: 4.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 193 PWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSP 272
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 495729166 273 GEYR 276
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
176-283 |
6.11e-27 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 106.78 E-value: 6.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 176 HPRLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYA 255
Cdd:COG4977 209 DPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFG 288
|
90 100
....*....|....*....|....*...
gi 495729166 256 SESSFHKAFMREFGCSPGEYRKRVKALA 283
Cdd:COG4977 289 SASHFRRAFRRRFGVSPSAYRRRFRARA 316
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
199-278 |
2.04e-24 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 93.42 E-value: 2.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 199 LAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREAS-SIITIADAVGYASESSFHKAFMREFGCSPGEYRK 277
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDTGlSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 495729166 278 R 278
Cdd:pfam12833 81 R 81
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
178-278 |
1.37e-18 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 83.86 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 178 RLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASE 257
Cdd:PRK09393 219 RLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSE 298
|
90 100
....*....|....*....|.
gi 495729166 258 SSFHKAFMREFGCSPGEYRKR 278
Cdd:PRK09393 299 ESLRHHFRRRAATSPAAYRKR 319
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| chlor_reg_RclR |
NF040475 |
reactive chlorine-specific transcriptional regulator RclR; |
1-284 |
0e+00 |
|
reactive chlorine-specific transcriptional regulator RclR;
Pssm-ID: 439702 [Multi-domain] Cd Length: 284 Bit Score: 522.88 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 1 MDPLSQLMAFSAPQGSIDKNCLLSSGWSLPHAAGSLATIRWHTVTQGAAWLELPAGEKLTLLPGQVVVLTQNSAHRLRQK 80
Cdd:NF040475 1 MDALSRLLMLNAPQGSIDKNCLLSSDWQLPHAAGELSVIRWHTVTQGAAWLEMPTGEALTLRPGQVVILPQNSAHRLRQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 81 GQEETWIVCGSLHLSSASRHFLTALPEALLMAPEQDSPEHTWLLAAVALLQQEAEVPQPGMAAVCSQQCATMIALGLRQW 160
Cdd:NF040475 81 GEEETHIVCGSLRLQTSSRYFLTALPEVLLLAPEQNSPESHWLLAAIALLQQEAESPQPGMDALCSQQCATMFTLAVREW 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 161 LRVNIQDKSQLNLLLHPRLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSR 240
Cdd:NF040475 161 LRQNTQAKSVLNLLLHPRLGAVIQSMLESPAHPWTVESLAQRVHMSRASFAQLFREVSGTTPLAVLTRLRLQIAAQMLSR 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 495729166 241 EASSIITIADAVGYASESSFHKAFMREFGCSPGEYRKRVKALAM 284
Cdd:NF040475 241 EALPVIVIAESVGYASESSFHKAFVREFGCTPGEYRRRVKALAM 284
|
|
| cupin_YkgD-like_N |
cd06995 |
AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin ... |
2-79 |
5.70e-30 |
|
AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin domain; This family contains mostly bacterial proteins containing an AraC/XylS family helix-turn-helix (HTH) DNA-binding domain C-terminal to a cupin domain, and may be possible transcriptional regulators. Included in this family is YkgD, an uncharacterized Escherichia coli protein thought to be a transcriptional regulator. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.
Pssm-ID: 380399 Cd Length: 114 Bit Score: 109.34 E-value: 5.70e-30
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 495729166 2 DPLSQLMAFSAPQGSIDKNCLLSSGWSLPHAAGSLATIRWHTVTQGAAWLELPAGEKLTLLPGQVVVLTQNSAHRLRQ 79
Cdd:cd06995 1 DALDRLIQLANVQGRLDLRCQLQGDWQLDHPAGPLGEARFHIVLQGECRLELPGGESLTLSPGDVVLLPQGSAHRLHS 78
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
193-276 |
4.68e-29 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 105.71 E-value: 4.68e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 193 PWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSP 272
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 495729166 273 GEYR 276
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
176-283 |
6.11e-27 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 106.78 E-value: 6.11e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 176 HPRLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYA 255
Cdd:COG4977 209 DPRLARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFG 288
|
90 100
....*....|....*....|....*...
gi 495729166 256 SESSFHKAFMREFGCSPGEYRKRVKALA 283
Cdd:COG4977 289 SASHFRRAFRRRFGVSPSAYRRRFRARA 316
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
199-278 |
2.04e-24 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 93.42 E-value: 2.04e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 199 LAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREAS-SIITIADAVGYASESSFHKAFMREFGCSPGEYRK 277
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLLEDTGlSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 495729166 278 R 278
Cdd:pfam12833 81 R 81
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
195-283 |
2.99e-24 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 98.31 E-value: 2.99e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 195 TVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSPGE 274
Cdd:COG2207 170 TLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSE 249
|
....*....
gi 495729166 275 YRKRVKALA 283
Cdd:COG2207 250 YRKRLRARA 258
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
178-278 |
1.37e-18 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 83.86 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 178 RLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASE 257
Cdd:PRK09393 219 RLGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSE 298
|
90 100
....*....|....*....|.
gi 495729166 258 SSFHKAFMREFGCSPGEYRKR 278
Cdd:PRK09393 299 ESLRHHFRRRAATSPAAYRKR 319
|
|
| Cupin_6 |
pfam12852 |
Cupin; This is a family of bacterial and eukaryotic proteins that belong to the Cupin ... |
2-161 |
1.89e-17 |
|
Cupin; This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.
Pssm-ID: 432833 Cd Length: 184 Bit Score: 78.12 E-value: 1.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 2 DPLSQLMAFSAPQGSIDKNCLLSSGWSLPHAAGSLATIrwHTVTQGAAWLELPAGEKLTLLPGQVVVLTQNSAHRL---- 77
Cdd:pfam12852 1 DVLSDLLAGLRLRGAVFFRGVLRAPWALRFPAGDGATF--HVVLRGSCWLRLPGGEPVRLRAGDLVLLPRGDPHVLaddp 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 78 ----------------------RQKGQEETWIVCGSLHLSSASRH-FLTALPEALLMapEQDSPEHTWLLAAVALLQQEA 134
Cdd:pfam12852 79 gtppvpvdplsraprpgegepvVGGGGAATVLLCGAFQFDGEAANpLLAALPPVLHV--PADEAAAPWLRALLELLAAEL 156
|
170 180
....*....|....*....|....*..
gi 495729166 135 EVPQPGMAAVCSQQCATMIALGLRQWL 161
Cdd:pfam12852 157 AEDRPGSQAVLDRLLDLLLVQALRAWL 183
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
182-278 |
4.51e-17 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 80.10 E-value: 4.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 182 AIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREAsSIITIADAVGYASESSFH 261
Cdd:COG2169 89 ACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQTGL-SVTDAAYAAGFGSLSRFY 167
|
90
....*....|....*..
gi 495729166 262 KAFMREFGCSPGEYRKR 278
Cdd:COG2169 168 EAFKKLLGMTPSAYRRG 184
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
175-278 |
8.85e-08 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 52.28 E-value: 8.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 175 LHPRLGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGY 254
Cdd:PRK10572 181 MDPRVREACQYISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGY 260
|
90 100
....*....|....*....|....
gi 495729166 255 ASESSFHKAFMREFGCSPGEYRKR 278
Cdd:PRK10572 261 DDQLYFSRVFKKCTGASPSEFRAR 284
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
193-279 |
4.88e-07 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 47.23 E-value: 4.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 193 PWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSP 272
Cdd:PRK10219 21 PLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTP 100
|
....*..
gi 495729166 273 GEYRKRV 279
Cdd:PRK10219 101 SDYRHRL 107
|
|
| PRK09978 |
PRK09978 |
DNA-binding transcriptional regulator GadX; Provisional |
150-278 |
1.84e-06 |
|
DNA-binding transcriptional regulator GadX; Provisional
Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 48.38 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 150 ATMIALglrqwLRVNIQDKSQLNLL---LHPRLGVAIQSMLNAP-HTPWTVASLAEQVHMSRASFALLFREvSGTTPLAV 225
Cdd:PRK09978 116 ALIFAL-----LSVFLEDEHFIPLLlnvLQPNMRTRVCTVINNNiAHEWTLARIASELLMSPSLLKKKLRE-EETSYSQL 189
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 495729166 226 LTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSPGEYRKR 278
Cdd:PRK09978 190 LTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQER 242
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
186-227 |
2.42e-06 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 43.68 E-value: 2.42e-06
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 495729166 186 MLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLT 227
Cdd:pfam00165 1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
158-278 |
3.71e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 47.21 E-value: 3.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 158 RQWLrvnIQDKSQLNLLLHprlgvAIQSMLNaphTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQ 237
Cdd:PRK13501 168 QAHL---LPDGEQLDLIMS-----ALQQSLG---AYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCL 236
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 495729166 238 LSREASSIITIADAVGYASESSFHKAFMREFGCSPGEYRKR 278
Cdd:PRK13501 237 LRGSEHRISDIAARCGFEDSNYFSAVFTREAGMTPRDYRQR 277
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
244-277 |
1.35e-05 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 41.37 E-value: 1.35e-05
10 20 30
....*....|....*....|....*....|....
gi 495729166 244 SIITIADAVGYaSESSFHKAFMREFGCSPGEYRK 277
Cdd:pfam00165 10 TIADIADELGF-SRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
183-278 |
2.38e-05 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 45.02 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 183 IQSMLNAPH-TPwtvASLAEQVHMSRASFALLFREvSGTTPLAVLTRIRLQIAAQQLSREAS--SIITIADAVGYASESS 259
Cdd:PRK09685 206 IDQSIQEEIlRP---EWIAGELGISVRSLYRLFAE-QGLVVAQYIRNRRLDRCADDLRPAADdeKITSIAYKWGFSDSSH 281
|
90
....*....|....*....
gi 495729166 260 FHKAFMREFGCSPGEYRKR 278
Cdd:PRK09685 282 FSTAFKQRFGVSPGEYRRK 300
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
218-276 |
3.71e-05 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 44.28 E-value: 3.71e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 495729166 218 SGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSPGEYR 276
Cdd:PRK13503 212 TGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSNHFSTLFRREFSWSPRDIR 270
|
|
| PRK10296 |
PRK10296 |
DNA-binding transcriptional regulator ChbR; Provisional |
202-278 |
5.29e-05 |
|
DNA-binding transcriptional regulator ChbR; Provisional
Pssm-ID: 182362 [Multi-domain] Cd Length: 278 Bit Score: 43.98 E-value: 5.29e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495729166 202 QVHMSRASfallfREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSPGEYRKR 278
Cdd:PRK10296 202 QEYLTRAT-----RRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGSYRKK 273
|
|
| PRK15435 |
PRK15435 |
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; |
192-284 |
5.29e-05 |
|
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada;
Pssm-ID: 185333 [Multi-domain] Cd Length: 353 Bit Score: 44.01 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 192 TPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRlqiaAQQLsREA----SSIITIADAVGYASESSFHKAFMRE 267
Cdd:PRK15435 98 TPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWR----ARRL-REAlakgESVTTSILNAGFPDSSSYYRKADET 172
|
90
....*....|....*..
gi 495729166 268 FGCSPGEYRKRVKALAM 284
Cdd:PRK15435 173 LGMTAKQFRHGGENLAV 189
|
|
| PRK09940 |
PRK09940 |
transcriptional regulator YdeO; Provisional |
193-280 |
5.92e-04 |
|
transcriptional regulator YdeO; Provisional
Pssm-ID: 182157 [Multi-domain] Cd Length: 253 Bit Score: 40.45 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 193 PWTVASLAEQVHMSRASFALLFREvSGTTPLAVLTRIRLQiAAQQLSREASSIITIADAVGYASESSFHKAFMREFGCSP 272
Cdd:PRK09940 150 PWKLKDICDCLYISESLLKKKLKQ-EQTTFSQILLDARMQ-HAKNLIRVEGSVNKIAEQCGYASTSYFIYAFRKHFGNSP 227
|
....*...
gi 495729166 273 GEYRKRVK 280
Cdd:PRK09940 228 KRVSKEYR 235
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
248-280 |
6.42e-03 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 35.22 E-value: 6.42e-03
10 20 30
....*....|....*....|....*....|...
gi 495729166 248 IADAVGYaSESSFHKAFMREFGCSPGEYRKRVK 280
Cdd:smart00342 7 LAEALGV-SPRHLQRLFKKETGTTPKQYLRDRR 38
|
|
| PRK10130 |
PRK10130 |
HTH-type transcriptional regulator EutR; |
179-272 |
6.46e-03 |
|
HTH-type transcriptional regulator EutR;
Pssm-ID: 182258 [Multi-domain] Cd Length: 350 Bit Score: 37.59 E-value: 6.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495729166 179 LGVAIQSMLNAPHTPWTVASLAEQVHMSRASFALLFREVSGTTPLAVLTRIRLQIAAQQLSREASSIITIADAV---GYA 255
Cdd:PRK10130 242 LSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRELISPWSQSTTVKDAAmqwGFW 321
|
90
....*....|....*..
gi 495729166 256 SESSFHKAFMREFGCSP 272
Cdd:PRK10130 322 HLGQFATDYQQLFAEKP 338
|
|
| |
