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Concise Results
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MULTISPECIES: virulence factor SrfB [Enterobacter]
Protein Classification
virulence factor SrfB ( domain architecture ID 10008567 )
virulence factor SrfB is the product of a gene activated by the SsrAB two-component regulatory system
List of domain hits
Name
Accession
Description
Interval
E-value
SrfB
COG4457 Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and ...
1-993
0e+00
Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443555
Cd Length: 998
Bit Score: 1769.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 1 ML VN L C DYKQ SV TLI A NSG V QFLDFGL TPQ - DSASN GRFVR KT ANGPLLRL DF D LVNGRYT LP GMN GG Q PEVV K PE TT I P 79
Cdd:COG4457 1 ML AE L T DYKQ EI TLI P NSG I QFLDFGL DLD a RPELS GRFVR RS ANGPLLRL LY D EESDKFL LP APP GG A PEVV D PE YS I S 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 80 L H QSL AV LDGVWLP V PFLRFNPPR T F VE GPDNWARV QVRK L D TPD TA GNTHRVTLA L D SQIA -- D HA T SA L S P V E N D IL N 157
Cdd:COG4457 81 L E QSL KL LDGVWLP L PFLRFNPPR R F DQ GPDNWARV RIVE L E TPD DD GNTHRVTLA F D TKLV ad D QN T AY L A P T E E D VR N 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 158 G TR FALAWR DN E VDS FLDQTW I DGWLRE A F TQY A DGV E N RSE R D LQQ A M R S FE Y QAH W LNLL TM LG E QL T VPE V K F VT H T 237
Cdd:COG4457 161 G AS FALAWR ND E MAW FLDQTW V DGWLRE V F KEF A RER E R RSE E D IED A L R Q FE H QAH Y LNLL SL LG S QL R VPE I K I VT T T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 238 L S -- T PAIPVDL I LDVGN TH TCG VI IEDH GDA NDGL R Q TA ELQ V R S LS E P QFLNEPL F T SR L EF SE ARFGK Q HFSVESGR 315
Cdd:COG4457 241 L Q di V PAIPVDL V LDVGN SR TCG IL IEDH PQE NDGL K Q SY ELQ L R D LS R P ELVYNEP F E SR V EF AQ ARFGK E HFSVESGR 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 316 E DAFVWPSIVRVG D EA RK LA MQ R L GTEG NS G I SSP R RYLWDE T P VV Q D WRF S Q MNS K TQ REPLATA F PLM N L M ND D GEPL 395
Cdd:COG4457 321 R DAFVWPSIVRVG P EA SR LA QR R E GTEG ST G L SSP K RYLWDE D P YE Q G WRF N Q AYD K SD REPLATA A PLM R L I ND R GEPL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 396 FT LP Q DERLPVFSP Q YSRS T LMT H ML C E L LAQAL G QINS V A T RLR L G FPAS PR Q LR TL ILTLPSAMPK Q EREIFR R RM FE 475
Cdd:COG4457 401 YQ LP E DERLPVFSP H YSRS S LMT F ML S E V LAQAL M QINS P A Q RLR M G HSDA PR R LR SI ILTLPSAMPK P EREIFR S RM EQ 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 476 AI AI VWK A MGWHP Q D E DF V T RKQQ EKS V VPVPE I Q M EWDEA S CGQLV W LYNE AISR FGG QT E A FFASLARPD RE P E p G SQ 555
Cdd:COG4457 481 AI GL VWK S MGWHP G D D DF S T PEDK EKS W VPVPE V Q V EWDEA T CGQLV Y LYNE TQVN FGG RI E E FFASLARPD KQ P D - G EA 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 556 PGR A LR V ASIDIGGGTTD M AIT H Y Q LDDG S G N NVKITP QL LFREGFKVAGDD T LLDVIQRYVLPALQ TQ L Q K S G I ADA SL 635
Cdd:COG4457 560 PGR T LR I ASIDIGGGTTD L AIT D Y R LDDG V G S NVKITP EQ LFREGFKVAGDD I LLDVIQRYVLPALQ AA L K K A G V ADA AS 639
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 636 L MAS LFG DS GR I D TQ AVLRQQ TA LQ L FMP IGH AIL AGW E SS D VD D PL A GLH ATFG D LL P - Q K PT RN V MN Y LQ QAI d HAL P 714
Cdd:COG4457 640 L LSR LFG GE GR S D QD AVLRQQ LT LQ V FMP LAL AIL SAY E QY D PL D RS A EIS ATFG E LL E l Q P PT DK V LD Y VN QAI - RRE P 718
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 715 AG SDA FDL FA VPL HVNFREMQD A M L A G QFTLAS PL H A V CE A ISHY S CD I LL I TGRP GC LPGVQAL I RHLQPVP V NRI VW L 794
Cdd:COG4457 719 AG APP FDL LD VPL QIDLSDLHE A F L S G RMSICK PL R A L CE V ISHY D CD V LL L TGRP SR LPGVQAL F RHLQPVP P NRI LP L 798
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 795 DK Y QVHE WYPF SQQ GRI GN PKSTAAVGAMLC S L A LDLRLP R F N FKA A D IGA YSTVRYLG V LDN T v NTL RE ENV W Y Q DIDL 874
Cdd:COG4457 799 HG Y RTGG WYPF HKN GRI DD PKSTAAVGAMLC L L S LDLRLP N F Y FKA G D FQP YSTVRYLG L LDN N - NTL KD ENV Y Y R DIDL 877
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 875 D K P GAK LDA RLH F PL RG N V T LGFRQL A N A RWPA T PLYTL S IN SA ELA KA IAGDGVL N V R L KL -- CG G S K QE GPE A FE LS D 952
Cdd:COG4457 878 D D P DYT LDA EAS F EM RG P V R LGFRQL D N E RWPA S PLYTL T IN NP ELA RK IAGDGVL R V T L AV dk AK G R K EA GPE R FE IA D 957
970 980 990 1000
....*....|....*....|....*....|....*....|.
gi 495776716 953 A W L Q DGTPV APDA L TF KLNTLAD RRHSG SHYW I DSGSVY L K 993
Cdd:COG4457 958 A E L S DGTPV PLRD L RL KLNTLAD SGSGD SHYW L DSGSVY I K 998
Name
Accession
Description
Interval
E-value
SrfB
COG4457 Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and ...
1-993
0e+00
Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443555
Cd Length: 998
Bit Score: 1769.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 1 ML VN L C DYKQ SV TLI A NSG V QFLDFGL TPQ - DSASN GRFVR KT ANGPLLRL DF D LVNGRYT LP GMN GG Q PEVV K PE TT I P 79
Cdd:COG4457 1 ML AE L T DYKQ EI TLI P NSG I QFLDFGL DLD a RPELS GRFVR RS ANGPLLRL LY D EESDKFL LP APP GG A PEVV D PE YS I S 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 80 L H QSL AV LDGVWLP V PFLRFNPPR T F VE GPDNWARV QVRK L D TPD TA GNTHRVTLA L D SQIA -- D HA T SA L S P V E N D IL N 157
Cdd:COG4457 81 L E QSL KL LDGVWLP L PFLRFNPPR R F DQ GPDNWARV RIVE L E TPD DD GNTHRVTLA F D TKLV ad D QN T AY L A P T E E D VR N 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 158 G TR FALAWR DN E VDS FLDQTW I DGWLRE A F TQY A DGV E N RSE R D LQQ A M R S FE Y QAH W LNLL TM LG E QL T VPE V K F VT H T 237
Cdd:COG4457 161 G AS FALAWR ND E MAW FLDQTW V DGWLRE V F KEF A RER E R RSE E D IED A L R Q FE H QAH Y LNLL SL LG S QL R VPE I K I VT T T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 238 L S -- T PAIPVDL I LDVGN TH TCG VI IEDH GDA NDGL R Q TA ELQ V R S LS E P QFLNEPL F T SR L EF SE ARFGK Q HFSVESGR 315
Cdd:COG4457 241 L Q di V PAIPVDL V LDVGN SR TCG IL IEDH PQE NDGL K Q SY ELQ L R D LS R P ELVYNEP F E SR V EF AQ ARFGK E HFSVESGR 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 316 E DAFVWPSIVRVG D EA RK LA MQ R L GTEG NS G I SSP R RYLWDE T P VV Q D WRF S Q MNS K TQ REPLATA F PLM N L M ND D GEPL 395
Cdd:COG4457 321 R DAFVWPSIVRVG P EA SR LA QR R E GTEG ST G L SSP K RYLWDE D P YE Q G WRF N Q AYD K SD REPLATA A PLM R L I ND R GEPL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 396 FT LP Q DERLPVFSP Q YSRS T LMT H ML C E L LAQAL G QINS V A T RLR L G FPAS PR Q LR TL ILTLPSAMPK Q EREIFR R RM FE 475
Cdd:COG4457 401 YQ LP E DERLPVFSP H YSRS S LMT F ML S E V LAQAL M QINS P A Q RLR M G HSDA PR R LR SI ILTLPSAMPK P EREIFR S RM EQ 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 476 AI AI VWK A MGWHP Q D E DF V T RKQQ EKS V VPVPE I Q M EWDEA S CGQLV W LYNE AISR FGG QT E A FFASLARPD RE P E p G SQ 555
Cdd:COG4457 481 AI GL VWK S MGWHP G D D DF S T PEDK EKS W VPVPE V Q V EWDEA T CGQLV Y LYNE TQVN FGG RI E E FFASLARPD KQ P D - G EA 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 556 PGR A LR V ASIDIGGGTTD M AIT H Y Q LDDG S G N NVKITP QL LFREGFKVAGDD T LLDVIQRYVLPALQ TQ L Q K S G I ADA SL 635
Cdd:COG4457 560 PGR T LR I ASIDIGGGTTD L AIT D Y R LDDG V G S NVKITP EQ LFREGFKVAGDD I LLDVIQRYVLPALQ AA L K K A G V ADA AS 639
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 636 L MAS LFG DS GR I D TQ AVLRQQ TA LQ L FMP IGH AIL AGW E SS D VD D PL A GLH ATFG D LL P - Q K PT RN V MN Y LQ QAI d HAL P 714
Cdd:COG4457 640 L LSR LFG GE GR S D QD AVLRQQ LT LQ V FMP LAL AIL SAY E QY D PL D RS A EIS ATFG E LL E l Q P PT DK V LD Y VN QAI - RRE P 718
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 715 AG SDA FDL FA VPL HVNFREMQD A M L A G QFTLAS PL H A V CE A ISHY S CD I LL I TGRP GC LPGVQAL I RHLQPVP V NRI VW L 794
Cdd:COG4457 719 AG APP FDL LD VPL QIDLSDLHE A F L S G RMSICK PL R A L CE V ISHY D CD V LL L TGRP SR LPGVQAL F RHLQPVP P NRI LP L 798
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 795 DK Y QVHE WYPF SQQ GRI GN PKSTAAVGAMLC S L A LDLRLP R F N FKA A D IGA YSTVRYLG V LDN T v NTL RE ENV W Y Q DIDL 874
Cdd:COG4457 799 HG Y RTGG WYPF HKN GRI DD PKSTAAVGAMLC L L S LDLRLP N F Y FKA G D FQP YSTVRYLG L LDN N - NTL KD ENV Y Y R DIDL 877
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 875 D K P GAK LDA RLH F PL RG N V T LGFRQL A N A RWPA T PLYTL S IN SA ELA KA IAGDGVL N V R L KL -- CG G S K QE GPE A FE LS D 952
Cdd:COG4457 878 D D P DYT LDA EAS F EM RG P V R LGFRQL D N E RWPA S PLYTL T IN NP ELA RK IAGDGVL R V T L AV dk AK G R K EA GPE R FE IA D 957
970 980 990 1000
....*....|....*....|....*....|....*....|.
gi 495776716 953 A W L Q DGTPV APDA L TF KLNTLAD RRHSG SHYW I DSGSVY L K 993
Cdd:COG4457 958 A E L S DGTPV PLRD L RL KLNTLAD SGSGD SHYW L DSGSVY I K 998
SrfB
pfam07520 Virulence factor SrfB; This family includes homologs of SsrAB is a two-component regulatory ...
8-991
0e+00
Virulence factor SrfB; This family includes homologs of SsrAB is a two-component regulatory system encoded within the Salmonella pathogenicity island SPI-2. Among the products of genes activated by SsrAB within epithelial and macrophage cells is Swiss:Q9KIJ9. homologs are found in several other proteobacteria.
Pssm-ID: 429510
Cd Length: 979
Bit Score: 1497.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 8 YKQ S VTLI A NSG V QFLDFGLT PQ - DSASN GRFVRK T ANGPLLRL DF D LVN GRY T LPG mn GGQ PEVV K PE T -- TIP L H QSL 84
Cdd:pfam07520 1 YKQ E VTLI P NSG I QFLDFGLT LD l RREPA GRFVRK S ANGPLLRL SY D EER GRY F LPG -- LAE PEVV R PE D ey SVS L R QSL 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 85 AV LDGVWLP V PF L RFNPPR T F VE GP D NWARV QVRK L D TPD TA GNTHRV T LA L D SQIAD -- HATSA L S P VEN D IL NG TR F A 162
Cdd:pfam07520 79 EL LDGVWLP L PF F RFNPPR R F DP GP T NWARV RIVA L P TPD ED GNTHRV V LA F D TRVMA ee EGMAY L A P TPD D VK NG RS F R 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 163 LA W R DN E VDS FLDQTW I D G WLRE A FT QY A DGVEN R SE RD LQQ am R S FE Y QAH W LNLL TM LG EQ L TV PE V K F V TH T LST -- 240
Cdd:pfam07520 159 LA S R SE E MSW FLDQTW V D D WLRE V FT EQ A QQRLK R PR RD ILP -- R E FE H QAH Y LNLL DL LG AA L AL PE I K L V NN T ADE iv 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 241 PA I P VDL I LDVGN TH TCG VI IEDH GDAN DGL R Q TA EL QV R S LS E P QF L NEPL F T SR L EF SE ARFGK Q HFSV E SGR E DAFV 320
Cdd:pfam07520 237 TP I D VDL V LDVGN SR TCG IL IEDH PQES DGL K Q SY EL EL R D LS R P EY L YSEP F E SR V EF AQ ARFGK E HFSV R SGR D DAFV 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 321 WPSIVRVG D EA RK LA MQ R L GTEG NS G I SSP R RYLWDE TPVV Q D WRF S Q MNS K TQR EPLATA F PL MN L M ND D GEPL FT LP Q 400
Cdd:pfam07520 317 WPSIVRVG P EA AR LA SL R R GTEG ST G L SSP K RYLWDE EAYE Q G WRF N Q AYV K GDQ EPLATA A PL TR L I ND L GEPL HQ LP T 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 401 DERLPVF S P Q YSRS T LMT H ML C E L LAQAL G QINS V A T RLR L G FPAS PR Q LR TL ILT L P S AMPK Q EREIFR R R MFE A I A I V 480
Cdd:pfam07520 397 DERLPVF R P H YSRS S LMT F ML A E V LAQAL M QINS P A Q RLR R G HSDL PR R LR RI ILT V P T AMPK P EREIFR Q R AKQ A L A L V 476
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 481 WK AM GWHP Q D E DF VTR K QQE KS V VP V PE I QMEWDEA S CGQLV W LYNE AISR FGG QT E A FFA S LARPD REPE P G S qpgra L 560
Cdd:pfam07520 477 WK SL GWHP A D D DF TPA K DKG KS W VP L PE V QMEWDEA T CGQLV Y LYNE VQQK FGG RA E E FFA L LARPD KAGR P P S ----- L 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 561 RVASIDIGGGTTD MA IT H Y Q LDDG S G N NV K ITP QLL FR E GFKVAGDD T LLDVIQR Y VLPALQ TQ L Q K S G IADASL LM AS L 640
Cdd:pfam07520 552 RVASIDIGGGTTD LV IT D Y R LDDG A G A NV T ITP EQR FR D GFKVAGDD I LLDVIQR V VLPALQ AA L K K A G VTSPDS LM SR L 631
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 641 FG DS G RIDTQ AVLRQQ TA LQ L FMP IGH AIL AGW E SS D VD DP L A GLH ATF G DLL -- PQK PT RN V MN Y LQQAIDHA LPA g SD 718
Cdd:pfam07520 632 FG GD G QSVQD AVLRQQ FT LQ V FMP LAL AIL EAY E RY D PL DP S A EID ATF A DLL aa EEA PT AA V LE Y VEEEVRRE LPA - AT 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 719 A FDL FA VPL HVNFREMQDAM L AGQF T LASP L H A V CE AISH Y S CD I LL I TGRP GC LPGV Q A LI R H L Q P V P V NRI VW L DK Y Q 798
Cdd:pfam07520 711 G FDL LD VPL SIDLEALHAIF L SNRM T ITKT L R A L CE VVHL Y D CD V LL L TGRP SR LPGV R A IF R E L L P L P P NRI IP L HN Y R 790
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 799 VHE WYPF SQ QGRI GN PK S TAAVGAMLC S LA LD LRLP R F N F K A ADIGA YSTVRY L G V LD NT v N T L REEN V W Y Q DIDLD K P G 878
Cdd:pfam07520 791 TGD WYPF HK QGRI DD PK T TAAVGAMLC L LA EG LRLP N F Y F R A GALRP YSTVRY I G E LD SN - N Q L KDDD V Y Y R DIDLD D P D 869
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 879 AK LD ARLH F PL RG NVT LGFRQL A N A RWPATPLYTL SINSAE LA KAI AGDG V L N V R L KLCG G SKQE G - PEAFE LSD A WLQ D 957
Cdd:pfam07520 870 YD LD PDAT F EM RG PLR LGFRQL D N E RWPATPLYTL DFANPK LA RKL AGDG P L R V T L ERDA G DDDA G v PEAFE IAS A EDA D 949
970 980 990
....*....|....*....|....*....|....
gi 495776716 958 GT P V AP D A L TF KLNTL A D rrhs GS HYW I D S GSV Y 991
Cdd:pfam07520 950 GT T V PR D D L RL KLNTL G D ---- DD HYW L D T GSV F 979
Name
Accession
Description
Interval
E-value
SrfB
COG4457 Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and ...
1-993
0e+00
Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443555
Cd Length: 998
Bit Score: 1769.45
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 1 ML VN L C DYKQ SV TLI A NSG V QFLDFGL TPQ - DSASN GRFVR KT ANGPLLRL DF D LVNGRYT LP GMN GG Q PEVV K PE TT I P 79
Cdd:COG4457 1 ML AE L T DYKQ EI TLI P NSG I QFLDFGL DLD a RPELS GRFVR RS ANGPLLRL LY D EESDKFL LP APP GG A PEVV D PE YS I S 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 80 L H QSL AV LDGVWLP V PFLRFNPPR T F VE GPDNWARV QVRK L D TPD TA GNTHRVTLA L D SQIA -- D HA T SA L S P V E N D IL N 157
Cdd:COG4457 81 L E QSL KL LDGVWLP L PFLRFNPPR R F DQ GPDNWARV RIVE L E TPD DD GNTHRVTLA F D TKLV ad D QN T AY L A P T E E D VR N 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 158 G TR FALAWR DN E VDS FLDQTW I DGWLRE A F TQY A DGV E N RSE R D LQQ A M R S FE Y QAH W LNLL TM LG E QL T VPE V K F VT H T 237
Cdd:COG4457 161 G AS FALAWR ND E MAW FLDQTW V DGWLRE V F KEF A RER E R RSE E D IED A L R Q FE H QAH Y LNLL SL LG S QL R VPE I K I VT T T 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 238 L S -- T PAIPVDL I LDVGN TH TCG VI IEDH GDA NDGL R Q TA ELQ V R S LS E P QFLNEPL F T SR L EF SE ARFGK Q HFSVESGR 315
Cdd:COG4457 241 L Q di V PAIPVDL V LDVGN SR TCG IL IEDH PQE NDGL K Q SY ELQ L R D LS R P ELVYNEP F E SR V EF AQ ARFGK E HFSVESGR 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 316 E DAFVWPSIVRVG D EA RK LA MQ R L GTEG NS G I SSP R RYLWDE T P VV Q D WRF S Q MNS K TQ REPLATA F PLM N L M ND D GEPL 395
Cdd:COG4457 321 R DAFVWPSIVRVG P EA SR LA QR R E GTEG ST G L SSP K RYLWDE D P YE Q G WRF N Q AYD K SD REPLATA A PLM R L I ND R GEPL 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 396 FT LP Q DERLPVFSP Q YSRS T LMT H ML C E L LAQAL G QINS V A T RLR L G FPAS PR Q LR TL ILTLPSAMPK Q EREIFR R RM FE 475
Cdd:COG4457 401 YQ LP E DERLPVFSP H YSRS S LMT F ML S E V LAQAL M QINS P A Q RLR M G HSDA PR R LR SI ILTLPSAMPK P EREIFR S RM EQ 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 476 AI AI VWK A MGWHP Q D E DF V T RKQQ EKS V VPVPE I Q M EWDEA S CGQLV W LYNE AISR FGG QT E A FFASLARPD RE P E p G SQ 555
Cdd:COG4457 481 AI GL VWK S MGWHP G D D DF S T PEDK EKS W VPVPE V Q V EWDEA T CGQLV Y LYNE TQVN FGG RI E E FFASLARPD KQ P D - G EA 559
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 556 PGR A LR V ASIDIGGGTTD M AIT H Y Q LDDG S G N NVKITP QL LFREGFKVAGDD T LLDVIQRYVLPALQ TQ L Q K S G I ADA SL 635
Cdd:COG4457 560 PGR T LR I ASIDIGGGTTD L AIT D Y R LDDG V G S NVKITP EQ LFREGFKVAGDD I LLDVIQRYVLPALQ AA L K K A G V ADA AS 639
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 636 L MAS LFG DS GR I D TQ AVLRQQ TA LQ L FMP IGH AIL AGW E SS D VD D PL A GLH ATFG D LL P - Q K PT RN V MN Y LQ QAI d HAL P 714
Cdd:COG4457 640 L LSR LFG GE GR S D QD AVLRQQ LT LQ V FMP LAL AIL SAY E QY D PL D RS A EIS ATFG E LL E l Q P PT DK V LD Y VN QAI - RRE P 718
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 715 AG SDA FDL FA VPL HVNFREMQD A M L A G QFTLAS PL H A V CE A ISHY S CD I LL I TGRP GC LPGVQAL I RHLQPVP V NRI VW L 794
Cdd:COG4457 719 AG APP FDL LD VPL QIDLSDLHE A F L S G RMSICK PL R A L CE V ISHY D CD V LL L TGRP SR LPGVQAL F RHLQPVP P NRI LP L 798
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 795 DK Y QVHE WYPF SQQ GRI GN PKSTAAVGAMLC S L A LDLRLP R F N FKA A D IGA YSTVRYLG V LDN T v NTL RE ENV W Y Q DIDL 874
Cdd:COG4457 799 HG Y RTGG WYPF HKN GRI DD PKSTAAVGAMLC L L S LDLRLP N F Y FKA G D FQP YSTVRYLG L LDN N - NTL KD ENV Y Y R DIDL 877
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 875 D K P GAK LDA RLH F PL RG N V T LGFRQL A N A RWPA T PLYTL S IN SA ELA KA IAGDGVL N V R L KL -- CG G S K QE GPE A FE LS D 952
Cdd:COG4457 878 D D P DYT LDA EAS F EM RG P V R LGFRQL D N E RWPA S PLYTL T IN NP ELA RK IAGDGVL R V T L AV dk AK G R K EA GPE R FE IA D 957
970 980 990 1000
....*....|....*....|....*....|....*....|.
gi 495776716 953 A W L Q DGTPV APDA L TF KLNTLAD RRHSG SHYW I DSGSVY L K 993
Cdd:COG4457 958 A E L S DGTPV PLRD L RL KLNTLAD SGSGD SHYW L DSGSVY I K 998
SrfB
pfam07520 Virulence factor SrfB; This family includes homologs of SsrAB is a two-component regulatory ...
8-991
0e+00
Virulence factor SrfB; This family includes homologs of SsrAB is a two-component regulatory system encoded within the Salmonella pathogenicity island SPI-2. Among the products of genes activated by SsrAB within epithelial and macrophage cells is Swiss:Q9KIJ9. homologs are found in several other proteobacteria.
Pssm-ID: 429510
Cd Length: 979
Bit Score: 1497.95
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 8 YKQ S VTLI A NSG V QFLDFGLT PQ - DSASN GRFVRK T ANGPLLRL DF D LVN GRY T LPG mn GGQ PEVV K PE T -- TIP L H QSL 84
Cdd:pfam07520 1 YKQ E VTLI P NSG I QFLDFGLT LD l RREPA GRFVRK S ANGPLLRL SY D EER GRY F LPG -- LAE PEVV R PE D ey SVS L R QSL 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 85 AV LDGVWLP V PF L RFNPPR T F VE GP D NWARV QVRK L D TPD TA GNTHRV T LA L D SQIAD -- HATSA L S P VEN D IL NG TR F A 162
Cdd:pfam07520 79 EL LDGVWLP L PF F RFNPPR R F DP GP T NWARV RIVA L P TPD ED GNTHRV V LA F D TRVMA ee EGMAY L A P TPD D VK NG RS F R 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 163 LA W R DN E VDS FLDQTW I D G WLRE A FT QY A DGVEN R SE RD LQQ am R S FE Y QAH W LNLL TM LG EQ L TV PE V K F V TH T LST -- 240
Cdd:pfam07520 159 LA S R SE E MSW FLDQTW V D D WLRE V FT EQ A QQRLK R PR RD ILP -- R E FE H QAH Y LNLL DL LG AA L AL PE I K L V NN T ADE iv 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 241 PA I P VDL I LDVGN TH TCG VI IEDH GDAN DGL R Q TA EL QV R S LS E P QF L NEPL F T SR L EF SE ARFGK Q HFSV E SGR E DAFV 320
Cdd:pfam07520 237 TP I D VDL V LDVGN SR TCG IL IEDH PQES DGL K Q SY EL EL R D LS R P EY L YSEP F E SR V EF AQ ARFGK E HFSV R SGR D DAFV 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 321 WPSIVRVG D EA RK LA MQ R L GTEG NS G I SSP R RYLWDE TPVV Q D WRF S Q MNS K TQR EPLATA F PL MN L M ND D GEPL FT LP Q 400
Cdd:pfam07520 317 WPSIVRVG P EA AR LA SL R R GTEG ST G L SSP K RYLWDE EAYE Q G WRF N Q AYV K GDQ EPLATA A PL TR L I ND L GEPL HQ LP T 396
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 401 DERLPVF S P Q YSRS T LMT H ML C E L LAQAL G QINS V A T RLR L G FPAS PR Q LR TL ILT L P S AMPK Q EREIFR R R MFE A I A I V 480
Cdd:pfam07520 397 DERLPVF R P H YSRS S LMT F ML A E V LAQAL M QINS P A Q RLR R G HSDL PR R LR RI ILT V P T AMPK P EREIFR Q R AKQ A L A L V 476
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 481 WK AM GWHP Q D E DF VTR K QQE KS V VP V PE I QMEWDEA S CGQLV W LYNE AISR FGG QT E A FFA S LARPD REPE P G S qpgra L 560
Cdd:pfam07520 477 WK SL GWHP A D D DF TPA K DKG KS W VP L PE V QMEWDEA T CGQLV Y LYNE VQQK FGG RA E E FFA L LARPD KAGR P P S ----- L 551
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 561 RVASIDIGGGTTD MA IT H Y Q LDDG S G N NV K ITP QLL FR E GFKVAGDD T LLDVIQR Y VLPALQ TQ L Q K S G IADASL LM AS L 640
Cdd:pfam07520 552 RVASIDIGGGTTD LV IT D Y R LDDG A G A NV T ITP EQR FR D GFKVAGDD I LLDVIQR V VLPALQ AA L K K A G VTSPDS LM SR L 631
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 641 FG DS G RIDTQ AVLRQQ TA LQ L FMP IGH AIL AGW E SS D VD DP L A GLH ATF G DLL -- PQK PT RN V MN Y LQQAIDHA LPA g SD 718
Cdd:pfam07520 632 FG GD G QSVQD AVLRQQ FT LQ V FMP LAL AIL EAY E RY D PL DP S A EID ATF A DLL aa EEA PT AA V LE Y VEEEVRRE LPA - AT 710
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 719 A FDL FA VPL HVNFREMQDAM L AGQF T LASP L H A V CE AISH Y S CD I LL I TGRP GC LPGV Q A LI R H L Q P V P V NRI VW L DK Y Q 798
Cdd:pfam07520 711 G FDL LD VPL SIDLEALHAIF L SNRM T ITKT L R A L CE VVHL Y D CD V LL L TGRP SR LPGV R A IF R E L L P L P P NRI IP L HN Y R 790
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 799 VHE WYPF SQ QGRI GN PK S TAAVGAMLC S LA LD LRLP R F N F K A ADIGA YSTVRY L G V LD NT v N T L REEN V W Y Q DIDLD K P G 878
Cdd:pfam07520 791 TGD WYPF HK QGRI DD PK T TAAVGAMLC L LA EG LRLP N F Y F R A GALRP YSTVRY I G E LD SN - N Q L KDDD V Y Y R DIDLD D P D 869
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495776716 879 AK LD ARLH F PL RG NVT LGFRQL A N A RWPATPLYTL SINSAE LA KAI AGDG V L N V R L KLCG G SKQE G - PEAFE LSD A WLQ D 957
Cdd:pfam07520 870 YD LD PDAT F EM RG PLR LGFRQL D N E RWPATPLYTL DFANPK LA RKL AGDG P L R V T L ERDA G DDDA G v PEAFE IAS A EDA D 949
970 980 990
....*....|....*....|....*....|....
gi 495776716 958 GT P V AP D A L TF KLNTL A D rrhs GS HYW I D S GSV Y 991
Cdd:pfam07520 950 GT T V PR D D L RL KLNTL G D ---- DD HYW L D T GSV F 979
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
