|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
1-302 |
0e+00 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 561.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMES 80
Cdd:PRK15406 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
Cdd:PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFL 240
Cdd:PRK15406 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495778208 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
Cdd:PRK15406 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
22-298 |
4.55e-108 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 315.13 E-value: 4.55e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 22 GRSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA--HWLGTDQLGRDVLSRLLYGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 102 RISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:COG1173 79 RISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 182 IVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:COG1173 159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 495778208 262 ANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG1173 239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
102-283 |
5.53e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.84 E-value: 5.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 102 RISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQN--------ILLIFVAIGM 173
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwgilpgLGLPALILAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 174 VSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLsS 253
Cdd:cd06261 82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-G 160
|
170 180 190
....*....|....*....|....*....|
gi 495778208 254 WGALLSDGANSMEVSPWLLLYPAGFLVVTL 283
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
24-76 |
7.08e-14 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 64.74 E-value: 7.08e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 495778208 24 SLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAP 76
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
1-302 |
0e+00 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 561.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMES 80
Cdd:PRK15406 1 MMLSKKNSEALENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQFAYDDTDWGMMSSAPDMES 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
Cdd:PRK15406 81 GHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFL 240
Cdd:PRK15406 161 GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIVPNVLGVVVVYASLLVPSMILFESFL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 495778208 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
Cdd:PRK15406 241 SFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
22-298 |
4.55e-108 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 315.13 E-value: 4.55e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 22 GRSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:COG1173 1 PRSRWRRAWRRLRRNPLAVIGLVILLLLVLLALFAPLLAPYDPTAQDLAARLQPPSAA--HWLGTDQLGRDVLSRLLYGA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 102 RISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:COG1173 79 RISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYAR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 182 IVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:COG1173 159 LVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEG 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 495778208 262 ANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG1173 239 RNYLLTAPWLALFPGLAIVLTVLAFNLLGDGLRDALD 275
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
23-300 |
1.96e-58 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 189.17 E-value: 1.96e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 23 RSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQF---TYFDTDwgMMSSAPDMEsgHYFGTDSSGRDLLVRVAI 99
Cdd:PRK15082 22 RTPWHEFWRRFRRQHVALVAGLFVLLLIVVAIFAPWIAPYdaeNYFDYD--ALNAGPSLQ--HWFGVDSLGRDIFSRILV 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 100 GGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDM 179
Cdd:PRK15082 98 GARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRIIMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAF 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 180 ARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLS 259
Cdd:PRK15082 178 ARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILPGTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLN 257
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 495778208 260 DGANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK15082 258 EARADMVIAPHVALFPSLAIFLTVLAFNLLGDGLRDALDPK 298
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
25-300 |
4.77e-50 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 167.69 E-value: 4.77e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 25 LWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSS---APDMEsgHYFGTDSSGRDLLVRVAIGG 101
Cdd:PRK09881 16 TRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTArllPPSAA--HWFGTDEVGRDLFSRVLVGS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 102 RISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMAR 181
Cdd:PRK09881 94 QQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 182 IVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDG 261
Cdd:PRK09881 174 LARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANG 253
|
250 260 270
....*....|....*....|....*....|....*....
gi 495778208 262 ANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK09881 254 RNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
41-299 |
9.25e-47 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 158.29 E-value: 9.25e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 41 ASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGT 120
Cdd:PRK10417 8 LALIIIALLALIALTSQWWLPYDPQAIDLPSRLLSPDAQ--HWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 121 LYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQ 200
Cdd:PRK10417 86 VIGGSAGLLGGRVDQATMRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAAR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 201 VGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLYPAGFLV 280
Cdd:PRK10417 166 LSGAGHVRVFIDHLLPAVIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALF 245
|
250
....*....|....*....
gi 495778208 281 VTLFCFNFIGDGLRDALDP 299
Cdd:PRK10417 246 ISVMAFNLLGDALRDHLDP 264
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
74-300 |
2.58e-44 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 153.77 E-value: 2.58e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 74 SAPDMEsgHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFV 153
Cdd:COG4239 115 SPPSAE--NWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 154 ILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSM 233
Cdd:COG4239 193 IILSSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGA 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 495778208 234 ILFESFLSFLGLGTQEPLSSWGALLSDGANSMEvSPWLLLYPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:COG4239 273 ITTLTSLDFLGFGLPPGSPSLGELLAQGKNNLQ-APWLGLSAFVVLALMLSLLVFIGEAVRDAFDPR 338
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
33-300 |
9.50e-41 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 143.38 E-value: 9.50e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 33 FMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLMVG 108
Cdd:PRK10913 26 FKRNKGAVVGLVYVVIMLFIAIFANWIAPHNPAEQFRDALLAPPVWQEGgswaHILGTDDVGRDVLSRLMYGARLSLLVG 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 109 IAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTL 188
Cdd:PRK10913 106 CLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIVNAALALTFVALPHYVRLTRAAVL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 189 SLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVS 268
Cdd:PRK10913 186 VEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSA 265
|
250 260 270
....*....|....*....|....*....|..
gi 495778208 269 PWLLLYPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:PRK10913 266 WWVVTFPGLAILLTVLAFNLMGDGLRDALDPK 297
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
74-299 |
4.17e-34 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 127.02 E-value: 4.17e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 74 SAPDMESghYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFV 153
Cdd:PRK15021 115 SPPSRQN--WLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLI 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 154 ILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSM 233
Cdd:PRK15021 193 ILLSSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSS 272
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 495778208 234 ILFESFLSFLGLGTQEPLSSWGALLSDGANSMEvSPWLLLYPAGFLVVTLFCFNFIGDGLRDALDP 299
Cdd:PRK15021 273 ITTLTSLDFLGFGLPLGSPSLGELLLQGKNNLQ-APWLGITAFLSVAILLSLLIFIGEAVRDAFDP 337
|
|
| SapC |
COG4171 |
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms]; |
31-298 |
1.28e-30 |
|
ABC-type antimicrobial peptide export system, permease component SapC [Defense mechanisms];
Pssm-ID: 443331 [Multi-domain] Cd Length: 296 Bit Score: 116.45 E-value: 1.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 31 RRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMESG----HYFGTDSSGRDLLVRVAIGGRISLM 106
Cdd:COG4171 21 QSFRKNPLAMIGLYGFLFLILLALFGPLLAPYSPDQQFIGALLLPPSWDDNgdvsFFLGTDDLGRDILSRLLYGARYTFG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 107 VGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQ 186
Cdd:COG4171 101 SALLVVLAAAIIGGIIGILAGMSRGLKSSILNHLLDTLLSIPSLLLAIIIVALLGPGLENAMLAITLALLPQFIHAIYQA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 187 TLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSME 266
Cdd:COG4171 181 VHQELKKEYVLAARLDGASNWQLLRYSILPNILEVLVTELTRALSIAILDISALGFLGLGAQLPSPEWGAMLGDSLELIY 260
|
250 260 270
....*....|....*....|....*....|..
gi 495778208 267 VSPWLLLYPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:COG4171 261 LAPWTVILPGLAIMFSVLIVNLVGDGLRRALN 292
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
24-298 |
2.39e-19 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 85.91 E-value: 2.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 24 SLWQDARRRFMHNRAAVASL---VVLVIIALF-VTLAPMLSQFTYFDTDWGMMSSAPDMESGHYFGTDSSGRDLLVRVAI 99
Cdd:PRK15111 14 GTLRTAWRKFYSDALAMVGLygcAGLALLCLFgGWLAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 100 GGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDM 179
Cdd:PRK15111 94 GAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRM 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 180 ARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLS 259
Cdd:PRK15111 174 VRSIYSAVHDELEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIAALGFLDLGAQLPSPEWGAMLG 253
|
250 260 270
....*....|....*....|....*....|....*....
gi 495778208 260 DGANSMEVSPWLLLYPAGFLVVTLFCFNFIGDGLRDALD 298
Cdd:PRK15111 254 DSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAII 292
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
102-283 |
5.53e-14 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 68.84 E-value: 5.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 102 RISLMVGIAAALVAVIVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQN--------ILLIFVAIGM 173
Cdd:cd06261 2 LNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLlgwgilpgLGLPALILAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 174 VSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLsS 253
Cdd:cd06261 82 LLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP-G 160
|
170 180 190
....*....|....*....|....*....|
gi 495778208 254 WGALLSDGANSMEVSPWLLLYPAGFLVVTL 283
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| OppC_N |
pfam12911 |
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have ... |
24-76 |
7.08e-14 |
|
N-terminal TM domain of oligopeptide transport permease C; Oligopeptide permeases (Opp) have been identified in numerous gram-negative and -positive bacteria. These transport systems belong to the superfamily of highly conserved ATP-binding cassette transporters. Typically, Opp importers comprise a complex of five proteins. The oligopeptide-binding protein OppA is responsible for the capture of peptides from the external medium. Two integral highly hydrophobic membrane spanning proteins, OppB and OppC, form a channel through the membrane used for peptide translocation. This N-terminal domain appears to be the first TM domain of the molecule.
Pssm-ID: 463747 [Multi-domain] Cd Length: 53 Bit Score: 64.74 E-value: 7.08e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 495778208 24 SLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAP 76
Cdd:pfam12911 1 SPWQDAWRRFRRNKLAMVGLVILLLLVLLAIFAPLLAPYDPDQQDLSADLLPP 53
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
119-300 |
1.08e-09 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 56.92 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 119 GTLYGSLSG-YLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNIL----LIFVAIGMVSWLDMARIVRGQTLSLKRK 193
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILghgiLPAIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 194 EFIEAAQVGGVSTGNIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEplsswGALLSDGANSMEVSpwLLL 273
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL-----GLLLIEAILGYDYP--EIQ 153
|
170 180
....*....|....*....|....*..
gi 495778208 274 YPAGFLVVTLFCFNFIGDGLRDALDPK 300
Cdd:pfam00528 154 GPVLAAALILLLLNLLVDILQRLLDPR 180
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
103-214 |
1.11e-06 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 49.30 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495778208 103 ISLMVGIAAALVAVIVGTLYGSLSGYL-GGKVDSVMMRLLEILNSFPFMFFVILLVTFFG-------------------- 161
Cdd:COG0601 97 VTLELALLALLLALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSFWLGLLLILLFAvklgwlpvsgrvspwedfld 176
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 495778208 162 --QNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTGNIVVRHI 214
Cdd:COG0601 177 alRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHA 231
|
|
| |
