NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|495851743|ref|WP_008576322|]
View 

MULTISPECIES: DUF2939 domain-containing protein [Xanthomonas]

Protein Classification

DUF2939 domain-containing protein( domain architecture ID 10567659)

DUF2939 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2939 pfam11159
Protein of unknown function (DUF2939); This bacterial family of proteins has no known function.
 12-103 3.64e-28

Protein of unknown function (DUF2939); This bacterial family of proteins has no known function.


:

Pssm-ID: 431690  Cd Length: 92  Bit Score: 100.77  E-value: 3.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495851743   12 LLTVTAWWFGGPYMTMHGLSKAIEQRDTAALERYVDFPRVRSSLRAQLNDYLVRQAGPDIATGPWGTLLYGLGNQLGGAA 91
Cdd:pfam11159   1 LLAALGAYAASPYLALYQLRQAARERDAAALSELVDFPALRASLKAQLNARLLRAAAPDLADDPLGALGAAFAARLVDAL 80

                          90
                  ....*....|..
gi 495851743   92 VDTLVTPIGIGA 103
Cdd:pfam11159  81 VDALVTPEGLAA 92
 
Name Accession Description Interval E-value
DUF2939 pfam11159
Protein of unknown function (DUF2939); This bacterial family of proteins has no known function.
 12-103 3.64e-28

Protein of unknown function (DUF2939); This bacterial family of proteins has no known function.


Pssm-ID: 431690  Cd Length: 92  Bit Score: 100.77  E-value: 3.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495851743   12 LLTVTAWWFGGPYMTMHGLSKAIEQRDTAALERYVDFPRVRSSLRAQLNDYLVRQAGPDIATGPWGTLLYGLGNQLGGAA 91
Cdd:pfam11159   1 LLAALGAYAASPYLALYQLRQAARERDAAALSELVDFPALRASLKAQLNARLLRAAAPDLADDPLGALGAAFAARLVDAL 80

                          90
                  ....*....|..
gi 495851743   92 VDTLVTPIGIGA 103
Cdd:pfam11159  81 VDALVTPEGLAA 92
 
Name Accession Description Interval E-value
DUF2939 pfam11159
Protein of unknown function (DUF2939); This bacterial family of proteins has no known function.
 12-103 3.64e-28

Protein of unknown function (DUF2939); This bacterial family of proteins has no known function.


Pssm-ID: 431690  Cd Length: 92  Bit Score: 100.77  E-value: 3.64e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 495851743   12 LLTVTAWWFGGPYMTMHGLSKAIEQRDTAALERYVDFPRVRSSLRAQLNDYLVRQAGPDIATGPWGTLLYGLGNQLGGAA 91
Cdd:pfam11159   1 LLAALGAYAASPYLALYQLRQAARERDAAALSELVDFPALRASLKAQLNARLLRAAAPDLADDPLGALGAAFAARLVDAL 80

                          90
                  ....*....|..
gi 495851743   92 VDTLVTPIGIGA 103
Cdd:pfam11159  81 VDALVTPEGLAA 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH