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Conserved domains on  [gi|496039173|ref|WP_008763680|]
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MULTISPECIES: magnesium transporter CorA family protein [Bacteroides]

Protein Classification

magnesium transporter CorA family protein( domain architecture ID 10191291)

magnesium transporter CorA family protein belonging to the CorA metal ion transporter (MIT) superfamily, similar to CorA which mediates both influx and efflux of magnesium, and may also transport nickel and cobalt

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
EcCorA_ZntB-like_u2 cd12827
uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB ...
22-309 1.20e-111

uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family; A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


:

Pssm-ID: 213361 [Multi-domain]  Cd Length: 289  Bit Score: 324.84  E-value: 1.20e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGN--WLLTILRIPMQNGQNEsLPFGTVPIGIITNNEIIV 99
Cdd:cd12827    1 WINVVNPTEEEIEQLAEKYGIPEDFLTYALDEEERSRIEYDDDtdYLLIILDVPVEEEEDD-DEYETIPLGIILTKDRLI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 100 SVCYHNTDLLPDFIEHtRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:cd12827   80 TICNHETDLLDDFLEG-RVKNFDTSSKTRFLLQILYRIATSYLKYLRQINKERDELEQELRKSTKNKELFQLLDLEKSLV 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 180 YFNTSIRGNEVMIGKLQSIFQDTDFL-DKELVEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLSI 258
Cdd:cd12827  159 YFSTSLKSNEIVLEKLKRSRSLKLDEeDKELLEDVIIENKQAIEMAEIYSDILSGLMDAFASVISNNLNNVMKFLTSITI 238
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 496039173 259 TLMIPTLIASFYGMNVDIHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12827  239 VLTIPTIITGFYGMNVPLPFADSPYAFWIILLISLLLSVIVALILRRKKYF 289
 
Name Accession Description Interval E-value
EcCorA_ZntB-like_u2 cd12827
uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB ...
22-309 1.20e-111

uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family; A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213361 [Multi-domain]  Cd Length: 289  Bit Score: 324.84  E-value: 1.20e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGN--WLLTILRIPMQNGQNEsLPFGTVPIGIITNNEIIV 99
Cdd:cd12827    1 WINVVNPTEEEIEQLAEKYGIPEDFLTYALDEEERSRIEYDDDtdYLLIILDVPVEEEEDD-DEYETIPLGIILTKDRLI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 100 SVCYHNTDLLPDFIEHtRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:cd12827   80 TICNHETDLLDDFLEG-RVKNFDTSSKTRFLLQILYRIATSYLKYLRQINKERDELEQELRKSTKNKELFQLLDLEKSLV 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 180 YFNTSIRGNEVMIGKLQSIFQDTDFL-DKELVEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLSI 258
Cdd:cd12827  159 YFSTSLKSNEIVLEKLKRSRSLKLDEeDKELLEDVIIENKQAIEMAEIYSDILSGLMDAFASVISNNLNNVMKFLTSITI 238
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 496039173 259 TLMIPTLIASFYGMNVDIHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12827  239 VLTIPTIITGFYGMNVPLPFADSPYAFWIILLISLLLSVIVALILRRKKYF 289
CorA COG0598
Mg2+ and Co2+ transporter CorA [Inorganic ion transport and metabolism];
21-309 8.03e-77

Mg2+ and Co2+ transporter CorA [Inorganic ion transport and metabolism];


Pssm-ID: 440363 [Multi-domain]  Cd Length: 305  Bit Score: 236.65  E-value: 8.03e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  21 CWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNEslPFGTVPIGIITNNEIIVS 100
Cdd:COG0598   16 VWIDLDGPTDEELEWLAEEFGLHPLALEDALDIEQRPKLEEYDDYLFIVLRTLNYNEEEE--ELETGPLSIFLGPNFLIT 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 101 VCYHNTDLLPDFIEH-TRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:COG0598   94 VRERPLDAFDDVRERlERGPGLLPRGPDYLLYALLDAIVDRYFPVLEELEDELDELEDELFESPDNELLRRLYRLRRELV 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 180 YFNTSIRGNEVMIGKLQSifQDTDFLDKEL---VEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSL 256
Cdd:COG0598  174 RLRRALAPLREVLSRLLR--GESPLISEEDreyLRDVYDHLERLLEMVDSLRERLSGLLDAYLSLISNRQNEIMKVLTII 251
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 496039173 257 SITLMIPTLIASFYGMNVD-IHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:COG0598  252 AAIFLPPTFIAGIYGMNFEgMPELDWPYGYPIVLGLMLLIAVLLYLYFKRKGWL 305
CorA pfam01544
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx ...
21-305 1.90e-47

CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.


Pssm-ID: 460246 [Multi-domain]  Cd Length: 292  Bit Score: 160.94  E-value: 1.90e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173   21 CWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPmqNGQNESLPFGTVPIGIITNNEIIVS 100
Cdd:pfam01544   5 VWLDLDSPTEAELEWLARTLGLDPLALEDLLDPEERPRVEDYDDYFLLVLPGV--NLDDSEEADELVTVSILLGDNFLIT 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  101 VCYHNTDLLPDFIEHTRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLVY 180
Cdd:pfam01544  83 VRHEPLPALDEVRKRLTLLGGGPLDPGDLLYRLLDEIVDRFLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVY 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  181 FNTSIRGNEVMIGKLQSiFQDTDFLDKELVE---DVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLS 257
Cdd:pfam01544 163 LRRSLLPQRDVLNRLLR-REDDPLLDDEQKEylrDLLDRLERLLEDLDALRERLRSLQDEYSSLLSERTNRVMKVLTVVT 241
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 496039173  258 ITLMIPTLIASFYGMNVDihleEMP-------YAFALIILCSVVLSTLAFIVFRK 305
Cdd:pfam01544 242 AIFLPLTLITGIYGMNFG----GLPelewsygYPFVLILGLMILLAILLLFYFRR 292
corA TIGR00383
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); The article in Microb Comp ...
22-309 1.48e-19

magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); The article in Microb Comp Genomics 1998;3(3):151-69 discusses this family and suggests that some members may have functions other than Mg2+ transport. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273048 [Multi-domain]  Cd Length: 318  Bit Score: 87.06  E-value: 1.48e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173   22 WVNVVCP-DNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNgqnESLPFGTVPIGIITNNEIIVS 100
Cdd:TIGR00383  29 WIDLIEPtDEERLAKLGQFFAIHPLALEDILNSPQRPKVEEDEDHLFIISFFLNED---EDDTFETEQVSFILGKNLLFT 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  101 VCYHNTDLLPDFIEHTRRKGIEVRNKLDLILRLIYSSAV-WFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:TIGR00383 106 IHERELPAFDSIRERIRTSQKVFEKGADYLLYDIFDAIIdSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELL 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  180 YFNTSIRGNEVMIGKLQSIFQDTDFLD--KELVEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLS 257
Cdd:TIGR00383 186 ALRRSLWPLRDVLNFLLRKTHLPIQTEevREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVS 265
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 496039173  258 ITLMIPTLIASFYGMNVDIHLE-EMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:TIGR00383 266 TIFIPLTFIAGIYGMNFKFMPElNWKYGYPAVLIVMAVIALGPLIYFRRKGWL 318
PRK11085 PRK11085
magnesium/cobalt transporter CorA;
235-308 7.09e-03

magnesium/cobalt transporter CorA;


Pssm-ID: 182951  Cd Length: 316  Bit Score: 37.78  E-value: 7.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496039173 235 MDAFASIISNNVNAIMKRMTSLSITLMIPTLIASFYGMNVDIhLEEMPYAFAL-IILCSVVLSTLA-FIVFRKIKW 308
Cdd:PRK11085 241 MQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEF-MPELKWSFGYpGAIILMILAGLApYLYFKRKNW 315
 
Name Accession Description Interval E-value
EcCorA_ZntB-like_u2 cd12827
uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB ...
22-309 1.20e-111

uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family; A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213361 [Multi-domain]  Cd Length: 289  Bit Score: 324.84  E-value: 1.20e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGN--WLLTILRIPMQNGQNEsLPFGTVPIGIITNNEIIV 99
Cdd:cd12827    1 WINVVNPTEEEIEQLAEKYGIPEDFLTYALDEEERSRIEYDDDtdYLLIILDVPVEEEEDD-DEYETIPLGIILTKDRLI 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 100 SVCYHNTDLLPDFIEHtRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:cd12827   80 TICNHETDLLDDFLEG-RVKNFDTSSKTRFLLQILYRIATSYLKYLRQINKERDELEQELRKSTKNKELFQLLDLEKSLV 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 180 YFNTSIRGNEVMIGKLQSIFQDTDFL-DKELVEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLSI 258
Cdd:cd12827  159 YFSTSLKSNEIVLEKLKRSRSLKLDEeDKELLEDVIIENKQAIEMAEIYSDILSGLMDAFASVISNNLNNVMKFLTSITI 238
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 496039173 259 TLMIPTLIASFYGMNVDIHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12827  239 VLTIPTIITGFYGMNVPLPFADSPYAFWIILLISLLLSVIVALILRRKKYF 289
CorA COG0598
Mg2+ and Co2+ transporter CorA [Inorganic ion transport and metabolism];
21-309 8.03e-77

Mg2+ and Co2+ transporter CorA [Inorganic ion transport and metabolism];


Pssm-ID: 440363 [Multi-domain]  Cd Length: 305  Bit Score: 236.65  E-value: 8.03e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  21 CWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNEslPFGTVPIGIITNNEIIVS 100
Cdd:COG0598   16 VWIDLDGPTDEELEWLAEEFGLHPLALEDALDIEQRPKLEEYDDYLFIVLRTLNYNEEEE--ELETGPLSIFLGPNFLIT 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 101 VCYHNTDLLPDFIEH-TRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:COG0598   94 VRERPLDAFDDVRERlERGPGLLPRGPDYLLYALLDAIVDRYFPVLEELEDELDELEDELFESPDNELLRRLYRLRRELV 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 180 YFNTSIRGNEVMIGKLQSifQDTDFLDKEL---VEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSL 256
Cdd:COG0598  174 RLRRALAPLREVLSRLLR--GESPLISEEDreyLRDVYDHLERLLEMVDSLRERLSGLLDAYLSLISNRQNEIMKVLTII 251
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 496039173 257 SITLMIPTLIASFYGMNVD-IHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:COG0598  252 AAIFLPPTFIAGIYGMNFEgMPELDWPYGYPIVLGLMLLIAVLLYLYFKRKGWL 305
CorA pfam01544
CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx ...
21-305 1.90e-47

CorA-like Mg2+ transporter protein; The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. The family includes the MRS2 protein from yeast that is thought to be an RNA splicing protein. However its membership of this family suggests that its effect on splicing is due to altered magnesium levels in the cell.


Pssm-ID: 460246 [Multi-domain]  Cd Length: 292  Bit Score: 160.94  E-value: 1.90e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173   21 CWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPmqNGQNESLPFGTVPIGIITNNEIIVS 100
Cdd:pfam01544   5 VWLDLDSPTEAELEWLARTLGLDPLALEDLLDPEERPRVEDYDDYFLLVLPGV--NLDDSEEADELVTVSILLGDNFLIT 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  101 VCYHNTDLLPDFIEHTRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLVY 180
Cdd:pfam01544  83 VRHEPLPALDEVRKRLTLLGGGPLDPGDLLYRLLDEIVDRFLELLEKLEDELDELEDELEDETNNELLRELAALRRSLVY 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  181 FNTSIRGNEVMIGKLQSiFQDTDFLDKELVE---DVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLS 257
Cdd:pfam01544 163 LRRSLLPQRDVLNRLLR-REDDPLLDDEQKEylrDLLDRLERLLEDLDALRERLRSLQDEYSSLLSERTNRVMKVLTVVT 241
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 496039173  258 ITLMIPTLIASFYGMNVDihleEMP-------YAFALIILCSVVLSTLAFIVFRK 305
Cdd:pfam01544 242 AIFLPLTLITGIYGMNFG----GLPelewsygYPFVLILGLMILLAILLLFYFRR 292
TmCorA-like cd12822
Thermotoga maritima CorA-like family; This family belongs to the MIT superfamily of essential ...
22-309 1.14e-31

Thermotoga maritima CorA-like family; This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213356 [Multi-domain]  Cd Length: 289  Bit Score: 119.21  E-value: 1.14e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNESLPfgTVPIGIITNNEIIVSV 101
Cdd:cd12822    1 WIDLEGPTEEELQLLAEEFGFHPLAIEDALNERQRPKIEEYDDYLFLVLRALRYDEEELELE--TSELSIFLGKNFLVTV 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 102 CYHNTDLLPDFIEHTRRKGIEVRNKLDLIL-RLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLVY 180
Cdd:cd12822   79 HEGPLRLIDEVIERLLSDPKLLPKGPDFLLyAILDAIVDSYFPILDELEDRLDELEDEILEEPRREVLRELFALRRELLR 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 181 FNTSIRGNEVMIGKLQSifQDTDFLDKELV---EDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLS 257
Cdd:cd12822  159 LRRILSPQREVLNRLLR--RENELISEELRpyfRDVYDHLERLAELLDSYRDLLSSLLDAYLSLQSNRTNEVMKVLTIIT 236
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 496039173 258 ITLMIPTLIASFYGMNVDIHLE-EMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12822  237 TIFLPLTFITGIYGMNFEYMPElHWPYGYFIVLGIMLLIAGGLLWWFRRKKWL 289
TmCorA-like_1 cd12828
Thermotoga maritima CorA_like subfamily; This subfamily belongs to the Thermotoga maritima ...
20-309 3.88e-24

Thermotoga maritima CorA_like subfamily; This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213362 [Multi-domain]  Cd Length: 294  Bit Score: 99.43  E-value: 3.88e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  20 NCWVNVVC-PDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNESLpfGTVPIGIITNNEII 98
Cdd:cd12828    2 VTWINVDGlHDIELIEKLGERFGLHPLVLEDILNTGQRPKVEEYDDYLFIVLKMLYYDEDTGEL--ESEQVSLILGKNYV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  99 VSVCYHNTDLLPDFIEHTRRKGIEVRNK-LDLILRLIYSSAV-WFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQK 176
Cdd:cd12828   80 ISFQERPGDVFDPVRERLRNGKGRIRKKgADYLAYALLDAIVdNYFPVLEKLGDRIEDLEEELLENPTPETLERIHKLKR 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 177 TLVYFNTSIRGNEVMIGKLQSifQDTDFLDKEL------VEDVIIelkQAFNTVNIYSDILTGTMDAFASIISNNVNAIM 250
Cdd:cd12828  160 ELLFLRRSIWPLREVINRLLR--GESPLISEETrpylrdVYDHTI---QVIDTIETYRDMLSGLLDLYLSSVSNRMNEVM 234
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496039173 251 KRMTSLSiTLMIP-TLIASFYGMNvdihLEEMP-------YAFALIILCSVVLSTLAFivFRKIKWF 309
Cdd:cd12828  235 KVLTIIS-TIFIPlTFIAGIYGMN----FEYMPelewkygYPAVLGVMLLIALGMLLY--FKRKKWL 294
EcCorA_ZntB-like cd12821
Escherichia coli CorA-Salmonella typhimurium ZntB_like family; A family of the MIT superfamily ...
22-308 5.73e-22

Escherichia coli CorA-Salmonella typhimurium ZntB_like family; A family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this family are found in all three kingdoms of life. It is a functionally diverse family, including the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs (which can also transport Co2+, and Ni2+ ), and the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). It also includes two Saccharomyces cerevisiae members: the inner membrane Mg2+ transporters Mfm1p/Lpe10p, and Mrs2p, and a family of Arabidopsis thaliana members (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213355 [Multi-domain]  Cd Length: 285  Bit Score: 93.15  E-value: 5.73e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLT-KTLNVPESFLNDIADTDERPRTD-TEGNWLLTILRIPMQNGQNEslpfgtvPIGIITNNEIIV 99
Cdd:cd12821    1 WYDIDEPDDEIRRLLEeLESSHLPNDLRDILLGVSFPRFEeVSGSGIYIQLRKPQKDADTA-------SFHFLITRDRLI 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 100 SVCYHNTDLLPDFIEHTRRKGIE-VRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTL 178
Cdd:cd12821   74 TVRLDELPALDELRQDLRSGQMKsAKSAAELLFVLLGAIIKALLTGIDQFEEKLEELEWDLLEGNNAIKLDRILELRREL 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 179 VYFNTSIRGNEVMIGKLQSIFQDTDFL-DKELVEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLS 257
Cdd:cd12821  154 LRLTNLIEPQQEVLMALQEAFAELLFSeDEEELRRTLDRIERLLQLIEEYEQELDTLQDIEEVVSSHRGNEIMKTLTVVT 233
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 496039173 258 ITLMIPTLIASFYGMNV-DIHLEEMPYAFALIILCSVVLSTLAFIVFRKIKW 308
Cdd:cd12821  234 TVFLPLTLIGGLWGMNFkNMPELEWKYGYLFVLGLIILSTAGLYLYLRRKGW 285
corA TIGR00383
magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); The article in Microb Comp ...
22-309 1.48e-19

magnesium Mg(2+) and cobalt Co(2+) transport protein (corA); The article in Microb Comp Genomics 1998;3(3):151-69 discusses this family and suggests that some members may have functions other than Mg2+ transport. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273048 [Multi-domain]  Cd Length: 318  Bit Score: 87.06  E-value: 1.48e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173   22 WVNVVCP-DNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNgqnESLPFGTVPIGIITNNEIIVS 100
Cdd:TIGR00383  29 WIDLIEPtDEERLAKLGQFFAIHPLALEDILNSPQRPKVEEDEDHLFIISFFLNED---EDDTFETEQVSFILGKNLLFT 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  101 VCYHNTDLLPDFIEHTRRKGIEVRNKLDLILRLIYSSAV-WFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLV 179
Cdd:TIGR00383 106 IHERELPAFDSIRERIRTSQKVFEKGADYLLYDIFDAIIdSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELL 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  180 YFNTSIRGNEVMIGKLQSIFQDTDFLD--KELVEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLS 257
Cdd:TIGR00383 186 ALRRSLWPLRDVLNFLLRKTHLPIQTEevREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVS 265
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 496039173  258 ITLMIPTLIASFYGMNVDIHLE-EMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:TIGR00383 266 TIFIPLTFIAGIYGMNFKFMPElNWKYGYPAVLIVMAVIALGPLIYFRRKGWL 318
Alr1p-like cd12829
Saccharomyces cerevisiae Alr1p-like subfamily; This eukaryotic subfamily belongs to the ...
22-306 6.70e-16

Saccharomyces cerevisiae Alr1p-like subfamily; This eukaryotic subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213363 [Multi-domain]  Cd Length: 305  Bit Score: 76.54  E-value: 6.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNESLPFGTVPIGIITNNEIIVSV 101
Cdd:cd12829    1 WLDVQSPTDDDMRAIGKLFPIHPLTLEDILSQDTREKVELFPNYYFISFRAIESDSELDENVLEPVNVYIVVFREGILTF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 102 cyHNTDllpdfIEHTRRkgieVRNKLDLILRLIYSSAVW------------FLKYLKQINLDISAAEkELERSIRNED-- 167
Cdd:cd12829   81 --HFKP-----LDHIER----VRKRIRLLSDSHLLSSDWvlyalldsivdsFFPLVDSIEKEVDSID-ELVLLISSSDqs 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 168 --LLRLMRLQKTLVYFNTSIRGNEVMIGKLQS--IFQDTDFLDKEL------VEDVIIELKQafnTVNIYSDILTGTMDA 237
Cdd:cd12829  149 dlLRRIGDLRRRVTSLLRLLFAKSDVLKQLLKrlMKKTFVSPDSEVaiylgdVQDHILTLLQ---KLNHYEDLLSRSHSN 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 238 FASIIS-------NNVNAIMKRMTSLSITLMIPTLIASFYGMNVDI----HLEEMPYAFALIILCSVVLSTLAFIVFRKI 306
Cdd:cd12829  226 YLAQLSlemsqesNGTDKAMLRLTVIATIFLPLQLITGLFGMNVKVpgqdIESLYWFFGIVIVAIMVLVAIVVVFLVRRW 305
MIT_CorA-like cd11744
metal ion transporter CorA-like divalent cation transporter superfamily; This superfamily of ...
22-309 7.06e-14

metal ion transporter CorA-like divalent cation transporter superfamily; This superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. They are found in most bacteria and archaea, and in some eukaryotes. It is a functionally diverse group which includes the Mg2+ transporters of Escherichia coli and Salmonella typhimurium CorAs (which can also transport Co2+, and Ni2+ ), the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and the Zn2+ transporter Salmonella typhimurium ZntB, which mediates the efflux of Zn2+ (and Cd2+). It includes five Saccharomyces cerevisiae members: i) two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, ii) two mitochondrial inner membrane Mg2+ transporters: Mfm1p/Lpe10p, and Mrs2p, and iii) and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. It also includes a family of Arabidopsis thaliana members (AtMGTs), some of which are localized to distinct tissues, and not all of which can transport Mg2+. Thermotoga maritima CorA and Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, Mrs2p, and Alr1p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213354 [Multi-domain]  Cd Length: 286  Bit Score: 70.69  E-value: 7.06e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRipMQNGQNESLPFGTVPIGIITNNEIIVSV 101
Cdd:cd11744    1 WIHCERLHDDDIRRVLEDNLHVPRALEDILLAESRPSFHPLDDNFMIILR--GFNMDENASPEDMLSVRILYFQGALIST 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 102 CYHNTDLLPDFIEHTRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKTLVYF 181
Cdd:cd11744   79 REIPSRAFMEIRQRLREHSKGPKSAASLLNQLIEGLNGKIDLYLETIEETLNELDVNDEEGHYDESTYNHIALQKALISI 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 182 NTSIRGNEVMigkLQSIFQDTDFLDKELVE---DVIIELKQAFNTVNIYSDILTGTMDAFASIISNNVNAIMKRMTSLSI 258
Cdd:cd11744  159 RRFIRPQQYA---LRDLIRSESELVTSRPHqyrFAHNNITRINETIEFYLGEVALLQDEIKHNRDEKTNKNSKLFTLVAT 235
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 496039173 259 TLMIPTLIASFYGMNVDIHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd11744  236 IFLPTTFLAGLYGMNFEGMPGVESSMAFTWFCIALIVAFGLEWLLFKRKGF 286
MtCorA-like cd12830
Mycobacterium tuberculosis CorA-like subfamily; This bacterial subfamily belongs to the ...
21-309 1.27e-13

Mycobacterium tuberculosis CorA-like subfamily; This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213364 [Multi-domain]  Cd Length: 292  Bit Score: 69.86  E-value: 1.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  21 CWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNESLPFGTVpiGIITNNEIIVS 100
Cdd:cd12830    3 VWVGLHEPDAEELAAVAEEFGLHELAVEDAVHAHQRPKLERYGDSLFLVLRTARYVDHTEEVETGET--HVFVGPDFVVT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 101 VCYHNTDLLPDfiehtrrkgieVRNKLDL---ILRLIYSSAVW---------FLKYLKQINLDISAAEKELERSIRNEDL 168
Cdd:cd12830   81 VRHGAAGPLAR-----------VRARLEAdpeLLALGPDAVLYaildfivdgYLPVAEELEDDVDELEEEVFSPDRRDDI 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 169 LRLMRLQKTLVYFNTSIRGNEVMIGKLQSifQDTDFLDKEL---VEDVIIELKQAFNTVNIYSDILTGTMDAFASIISNN 245
Cdd:cd12830  150 ERIYRLKREVLEFRRAVDPLVEVLRRLAR--GHEPLIPKELrpyFRDVADHLLRVADRVDSLRELLSSALQANLALVSVQ 227
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496039173 246 VNAIMKRMTSLSITLMIPTLIASFYGMNVDiHLEE--MPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12830  228 QNEDMRKISAWAAILAVPTAIAGIYGMNFD-HMPElhWTYGYPLVLGLMVAVCLGLYRRFRRNGWL 292
EcCorA-like cd12825
Escherichia coli Mg2+ transporter CorA_like subfamily; A bacterial subfamily of the ...
22-309 1.36e-13

Escherichia coli Mg2+ transporter CorA_like subfamily; A bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB_like(EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporters Escherichia coli, Salmonella typhimurium, and Helicobacter pylori CorAs (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213359 [Multi-domain]  Cd Length: 287  Bit Score: 69.65  E-value: 1.36e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQngQNESLpFGTVPIGIITNNEIIVSV 101
Cdd:cd12825    1 WIDLINPTEEELATLSSEYGFILPPREHLEDIEISSRYWEDDSQLFITLSFPNQ--TKEDT-IEEEPVTFIIKGNILFTI 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 102 CYHNTDLLPDFIEHTRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKEL--ERSIRNEDLLRLMRLQktlv 179
Cdd:cd12825   78 RYRDLPAFDIFPKRAFSQRKFFNSGEELFLFLFEVIVDYLADILENISKKIKQLSREIleEKQFSEEDLDALTKLN---- 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 180 YFNTSIRgnEVMIGKLQSI--FQDTDFLDKELVEDVIIELKQaFNTV----NIYSDILTGTMDAFASIISNNVNAIMKRM 253
Cdd:cd12825  154 ENNITLR--ESLIEKQRIItlLLKSPRENSDTKEKLKIELRD-LSSLldhtTFNFDKLDDLKNNILGKIELEQNKIIKIF 230
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 254 TSLSITLMIPTLIASFYGMNVDIHLE---EMPYAFALIILcsvVLSTLA-FIVFRKIKWF 309
Cdd:cd12825  231 TVVTVCFLPPTLIASIYGMNFKNMPElkwSYGYPFALILM---ILSTILpLLYFKRKGWL 287
TmCorA-like_u3 cd12832
Uncharacterized subfamily of the Thermotoga maritima CorA-like family; This subfamily belongs ...
22-308 1.18e-11

Uncharacterized subfamily of the Thermotoga maritima CorA-like family; This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213366 [Multi-domain]  Cd Length: 287  Bit Score: 64.16  E-value: 1.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNGQNESLPFG--TVPIGIITNNEIIV 99
Cdd:cd12832    1 WIDVVAPTEEDLEDLARRYNLHETSLKDCLDPDHLPKYEEVDGVTFIILRVYTDKKRENADTIQelTTKIAIFVVDKFVI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 100 SVcyHNTDLlpDFIEHTRRKGIEVRNKLD----LILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLL------ 169
Cdd:cd12832   81 TI--HRTDL--EFIANLKEKWLSGMHKCEspteLLLRIVKDALKTYEAPLEKLSEELDKYEEEVFLKKRKGSLLkrlyhl 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 170 -RLMRLQKTLVYFNTSIrgnevmIGKLqsifqDTDFLDKELVEDVIIEL-KQAFNTVNIYSDIlTGTMDAFASIISNNVN 247
Cdd:cd12832  157 kRKASVIKRVLNLTQDV------IDKI-----DTPLKSDPYTQDLRDLLiKLLSLYDELHENA-TNLLSLYISLSSQRTN 224
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496039173 248 AIMKRMTSLSITLMIPTLIASFYGMNVDiHLEEM--PYAFALIILCSVVLSTLAFIVFRKIKW 308
Cdd:cd12832  225 EVMRVLTIFSVFFLPLTFIAGVYGMNFK-YMPELhwKYGYPATLLVMIVIVVGIYFWFKRKGW 286
Mrs2_Mfm1p-like cd12823
Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like ...
145-308 3.17e-11

Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family; A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213357  Cd Length: 323  Bit Score: 63.03  E-value: 3.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 145 LKQINLDISAAEKELERSIRNEDLLRLMRLQKTLVYFNTSIRG-----NEV------MIG--------KLQSIFQDTDFL 205
Cdd:cd12823  130 LKRLEPEALPLLDELTDKISTSNLERLLPLKRRLVELETRVQKvrdalEELldddedMADmyltdkaaGPERLESSRKED 209
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 206 DKELVEDvIIE--LKQAFNTVNIySDILTGTMDAFASII----SNNVNAIMK---RMTSLSITLMIPTLIASFYGMNVDI 276
Cdd:cd12823  210 DHEEVEM-LLEayLQQVDELLNK-LEELREYIDDTEELInlilDSRRNQLMRlelKLSIGTLSLAVGTLVAGLFGMNLPS 287
                        170       180       190
                 ....*....|....*....|....*....|...
gi 496039173 277 HLEEMPYAFALIILCSVVLSTLAFIVF-RKIKW 308
Cdd:cd12823  288 GLEESPYAFWIVTGGSVVGSILIFIVVlRYLRR 320
EcCorA-like_1 cd12835
Escherichia coli Mg2+ transporter CorA_like subgroup; A bacterial subgroup of the Escherichia ...
22-308 3.57e-11

Escherichia coli Mg2+ transporter CorA_like subgroup; A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporters Escherichia coli CorA and Salmonella typhimurium CorA (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213369  Cd Length: 287  Bit Score: 62.66  E-value: 3.57e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  22 WVNVVCPDNDDFEFLTKTLN--VPESF-LNDIaDTDERPRTDTEGnwlLTILRIPMQNGQNEslpFGTVPIGIITNNEII 98
Cdd:cd12835    1 WIDLIAPDDEEREWLEQLLGqeLPDLEdLEEI-EASARFYVDEDG---LHIHSLFLQDSEGR---ARNVTVAFTLRDDRL 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  99 VSVcyHNTDLlPDF---IEHTRRKGIEVRNKLDLILRL--------------IYSSavwFLKYLKQI-NLDISAAEKELE 160
Cdd:cd12835   74 ITL--REEEL-PVFrllRLRARRGPGEVSDPKDLLLDLfeqkveyladiiedIYRD---LERVSREVlEENDEDLEEALG 147
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 161 RSIRNEDL-----LRLMRLQKTLVYFNTSIRGNEVMIGKLQSIFQD-------TDFLdkelvedviielkqaFNTVNIYs 228
Cdd:cd12835  148 RLARQEDLngkirLCLMDTQRALSFLLRTRRLSDEQLEDAREILRDiesllphTQFL---------------FDKINFL- 211
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 229 diltgtMDAFASIISNNVNAIMKRMTSLSITLMIPTLIASFYGMNVDIHLE---EMPYAFALIILCSVVLSTLAFivFRK 305
Cdd:cd12835  212 ------MDAAMGFINIEQNKIIKIFSVAAVVFLPPTLIASIYGMNFDFMPEldwKFGYPMAIGLMILSAIAPYLY--FKR 283

                 ...
gi 496039173 306 IKW 308
Cdd:cd12835  284 KGW 286
HpCorA-like cd12836
Mg2+ transporter Helicobacter pylori CorA-like subgroup; A bacterial subgroup of the ...
145-308 6.54e-11

Mg2+ transporter Helicobacter pylori CorA-like subgroup; A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporter Helicobacter pylori CorAs (which can also transport Co2+, and Ni2+); CorA plays an important role in the viability of this pathogen. Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB (members of the EcCorA_ZntB-like family) form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213370 [Multi-domain]  Cd Length: 288  Bit Score: 61.89  E-value: 6.54e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 145 LKQINLDISAAEKEL--ERSIRNEDLLRLMRLQKtlvyFNTSIRGNEVMIGKLQSIFQDTDFLDKELVEDVIIELKQA-- 220
Cdd:cd12836  122 LENISKEISKLRKKLfaDEDLDEELLEKISRLQE----LNMTIRENLIDKQRVLSSLLKSEKFPEDLKENLRIMIKDIns 197
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 221 ---FNTVNIysDILTGTMDAFASIISNNVNAIMKRMTSLSITLMIPTLIASFYGMNvdihLEEMP-------YAFALIIL 290
Cdd:cd12836  198 lieHTTFNF--ERLDYLQNTFLGLINIEQNKIIKIFTVATVIFMPPTLIASIYGMN----FKFMPeldwkygYPFALLLM 271
                        170
                 ....*....|....*...
gi 496039173 291 csVVLSTLAFIVFRKIKW 308
Cdd:cd12836  272 --VISSILPLLYFKKKKW 287
EcCorA-like_u1 cd12837
uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily; A ...
204-309 1.00e-09

uncharacterized subgroup of the Escherichia coli Mg2+ transporter CorA_like subfamily; A uncharacterized subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. The EcCorA_ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA_ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213371 [Multi-domain]  Cd Length: 298  Bit Score: 58.31  E-value: 1.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 204 FLDKELVEDVIIELKQAFNTVniYSDILTgtMDAFASIISNNV---------------NAIMKRMTSLSITLMIPTLIAS 268
Cdd:cd12837  181 FLSANAADWLSKELRARLKTL--QRDVAS--LSEHATFLSNKIqflldatlglinieqNNIIKIFSVASVVFLPPTLIAS 256
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 496039173 269 FYGMNVdihlEEMP-------YAFAL-IILCSVVlstLAFIVFRKIKWF 309
Cdd:cd12837  257 IYGMNF----KHMPeldwpfgYPLALgLMVLSAV---LPLLWFKRRGWL 298
ZntB-like_1 cd12833
Salmonella typhimurium Zn2+ transporter ZntB-like subgroup; A bacterial subgroup belonging to ...
19-309 5.60e-07

Salmonella typhimurium Zn2+ transporter ZntB-like subgroup; A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213367 [Multi-domain]  Cd Length: 290  Bit Score: 50.18  E-value: 5.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  19 PNCWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRipmqnGQN---ESLPFGTVPIGIITNN 95
Cdd:cd12833    1 GFLWLHLDYSDPEAQDWLEQSSGLPELVIDALLAEETRPRATRLGDGLLLNLR-----GVNlnpGADPEDMVSIRLWITP 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  96 EIIVSVCYHNTDLLPDFIEHTRRkGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQ 175
Cdd:cd12833   76 GRIISTRRRRLLAVDDIREALEA-GKGPKSPGDFLAALAERLTDRMEDVIDELEDRLDELEERVLEEEDEELRGELAELR 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 176 KTLVYFNTSIRGNEVMIGKLQSifQDTDFLDkelvEDVIIELKQAFNTVNIYSDiltgTMDAF---ASIISNNVNAIM-- 250
Cdd:cd12833  155 RQAIALRRYLAPQRDALERLAR--EDLPWLS----DDDRLRLREAADRLTRYIE----DLDAIrerAAVLQEELTNRRae 224
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496039173 251 ---KRMTSLSITLMI---PTLIASFYGMNVD-IHLEEMPYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12833  225 qmnRRMYVLSIVAAIflpLGFLTGLLGINVGgIPGAENPWAFWIFCGLLVVLAVGLLLLFRRKKWL 290
TmCorA-like_u2 cd12831
Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family; This ...
236-309 6.10e-07

Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family; This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213365 [Multi-domain]  Cd Length: 287  Bit Score: 49.85  E-value: 6.10e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 496039173 236 DAFASIISNNVNAIMKRMTSLSITLMIPTLIASFYGMNvdihLEEMP-----YAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12831  213 DNYESYNSNRMNSIMMTLTIISTIFMPLTFIAGIYGMN----FEYMPelkwhYGYFVVLGIMLLIAIGMILWFKKKGWF 287
ZntB-like cd12824
Salmonella typhimurium Zn2+ transporter ZntB-like subfamily; A bacterial subfamily belonging ...
19-307 9.48e-06

Salmonella typhimurium Zn2+ transporter ZntB-like subfamily; A bacterial subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213358 [Multi-domain]  Cd Length: 290  Bit Score: 46.36  E-value: 9.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  19 PNCWVNVVCPDNDDFEFLTKTLNVPESFLNDIADTDERPRTDTEGNWLLTILRIPMQNgQNESlPFGTVPIGIITNNEII 98
Cdd:cd12824    1 GNTWYHCDRADPAIRSWLEDNTHLPEATVDHLLAPVRFPHFEPVDDGFLLSLRGIRMD-EAAS-PSDMADLRILIGQGAA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173  99 VSVcyHNTDLLP-DFIEHTRRKGIEVRNKLDLILRLIYSSAVWFLKYLKQINLDISAAEKELERSIRNEDLLRLMRLQKT 177
Cdd:cd12824   79 VTV--RSGPSRAvDELRRALRDHSSLKSLADLLAQMISGMTKRLELVIFDLTETLDEVEDNLLDGGTAPPPYALIALQRR 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496039173 178 LVYFNTSIRGNEvmigklQSIFQDTDFLDKELVEDVIIELKQAFNTVNIYS---DILTGTMDAFASIISNNVNAIMKRMT 254
Cdd:cd12824  157 LFRIRRQIRPQQ------QALRPLITDPAELLVTSDRETLRRASNNVTRYLetlDFCRTRVALLQDEIKAQRDEKTTRSS 230
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 496039173 255 ---SLSITLMIP-TLIASFYGMNV-DIHLEEMPYAFALIILCSVVLSTLAFIVFRKIK 307
Cdd:cd12824  231 lllTVVATVFLPlTFITGLLGMNVgGIPDVESPMGFWWVTGLSILVALLAWLLLRRLG 288
EcCorA_ZntB-like_u1 cd12826
uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB ...
236-309 8.44e-05

uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family; A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. The EcCorA-ZntB_like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB_like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.


Pssm-ID: 213360  Cd Length: 281  Bit Score: 43.32  E-value: 8.44e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496039173 236 DAFASIISNNVNAIMKRMTSLSITLMIPTLIASFYGMNVdIHLEEM--PYAFALIILCSVVLSTLAFIVFRKIKWF 309
Cdd:cd12826  207 ELYQSQIDIRQNRIMKILTVVTTIFLPLTLITGWYGMNF-TNMPELhwKYGYPVVIILSILIVVIEIIYFKKKKWL 281
PRK11085 PRK11085
magnesium/cobalt transporter CorA;
235-308 7.09e-03

magnesium/cobalt transporter CorA;


Pssm-ID: 182951  Cd Length: 316  Bit Score: 37.78  E-value: 7.09e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496039173 235 MDAFASIISNNVNAIMKRMTSLSITLMIPTLIASFYGMNVDIhLEEMPYAFAL-IILCSVVLSTLA-FIVFRKIKW 308
Cdd:PRK11085 241 MQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSYGMNFEF-MPELKWSFGYpGAIILMILAGLApYLYFKRKNW 315
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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