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Conserved domains on  [gi|496062294|ref|WP_008786801|]
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MULTISPECIES: PerC family transcriptional regulator [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PerC super family cl05552
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 27-102 1.12e-06

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


The actual alignment was detected with superfamily member pfam06069:

Pssm-ID: 310570  Cd Length: 90  Bit Score: 43.33  E-value: 1.12e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 496062294   27 LARDLEERGLYLRAARQWGEVM--FEHTQCTEYIVEQRERCIRLSNsrhedriRQHEQASDLQYIHKHINDVYTRMGL 102
Cdd:pfam06069   6 VAEKLEAKGFYRRAADRWAEVMvlVETDAERKWAAQRRAECLRKAS-------RPPLPPDNISEIKKAVDRTYREMGI 76
 
Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 27-102 1.12e-06

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


Pssm-ID: 310570  Cd Length: 90  Bit Score: 43.33  E-value: 1.12e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 496062294   27 LARDLEERGLYLRAARQWGEVM--FEHTQCTEYIVEQRERCIRLSNsrhedriRQHEQASDLQYIHKHINDVYTRMGL 102
Cdd:pfam06069   6 VAEKLEAKGFYRRAADRWAEVMvlVETDAERKWAAQRRAECLRKAS-------RPPLPPDNISEIKKAVDRTYREMGI 76
 
Name Accession Description Interval E-value
PerC pfam06069
PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in ...
 27-102 1.12e-06

PerC transcriptional activator; PerC is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria.


Pssm-ID: 310570  Cd Length: 90  Bit Score: 43.33  E-value: 1.12e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 496062294   27 LARDLEERGLYLRAARQWGEVM--FEHTQCTEYIVEQRERCIRLSNsrhedriRQHEQASDLQYIHKHINDVYTRMGL 102
Cdd:pfam06069   6 VAEKLEAKGFYRRAADRWAEVMvlVETDAERKWAAQRRAECLRKAS-------RPPLPPDNISEIKKAVDRTYREMGI 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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