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Conserved domains on  [gi|496079708|ref|WP_008804215|]
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MULTISPECIES: cystine ABC transporter permease [Klebsiella]

Protein Classification

cystine ABC transporter permease( domain architecture ID 11487640)

cystine ABC transporter permease similar to Escherichia coli L-cystine transport system permease protein YecS which is part of the ABC transporter complex FliY-YecC-YecS involved in L-cystine transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15100 PRK15100
cystine ABC transporter permease;
1-220 1.44e-146

cystine ABC transporter permease;


:

Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 407.21  E-value: 1.44e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   1 MQESIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK15100   1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:PRK15100  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNRQERD 220
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
 
Name Accession Description Interval E-value
PRK15100 PRK15100
cystine ABC transporter permease;
1-220 1.44e-146

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 407.21  E-value: 1.44e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   1 MQESIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK15100   1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:PRK15100  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNRQERD 220
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-216 1.27e-97

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 283.12  E-value: 1.27e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   1 MQESIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ 80
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 496079708 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNR 216
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 13-216 4.98e-47

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 154.24  E-value: 4.98e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   13 PFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM 92
Cdd:TIGR03004   5 PLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVTTGV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   93 IGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELF 172
Cdd:TIGR03004  85 MVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 496079708  173 RQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNR 216
Cdd:TIGR03004 165 FAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 22-204 5.87e-25

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 96.58  E-value: 5.87e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  22 TLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFG---IELDPIPAAMIGLSLN 98
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILALLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  99 TAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLI 178
Cdd:cd06261   84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                        170       180
                 ....*....|....*....|....*.
gi 496079708 179 TSRTLEVFTMYLAASLIYWVMATVLS 204
Cdd:cd06261  164 LLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-211 4.74e-17

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 75.80  E-value: 4.74e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   33 GLVLGFILALMRMsplWPVKWLARMYISIFRGTPLIAQLFMIYYgLPQFGIELDPIPAAMIGLSLNTAAYAAETLRAAIA 112
Cdd:pfam00528   1 GIPLGIIAALRRG---RRLDRLLRPLIDLLQALPSFVLAILLVV-IAILSILGHGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  113 SIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATI----QVPELFRQAQLItSRTLEVFTM 188
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILG-YDYPEIQGP 155

                         170       180
                  ....*....|....*....|...
gi 496079708  189 YLAASLIYWVMATVLSSLQNYFE 211
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLD 178
 
Name Accession Description Interval E-value
PRK15100 PRK15100
cystine ABC transporter permease;
1-220 1.44e-146

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 407.21  E-value: 1.44e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   1 MQESIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK15100   1 MQESIQLVIDSAPFLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:PRK15100  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDT 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNRQERD 220
Cdd:PRK15100 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSALQNRFENQLNRQERE 220
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-216 1.27e-97

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 283.12  E-value: 1.27e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   1 MQESIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ 80
Cdd:COG0765    1 MFFDFSVLLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  81 FGIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT 160
Cdd:COG0765   81 LGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDT 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 496079708 161 SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNR 216
Cdd:COG0765  161 SLVSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 4-219 2.43e-74

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 224.59  E-value: 2.43e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   4 SIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFG- 82
Cdd:COG4160    2 DLDLLFEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLGQFEw 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  83 --------IELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFI 154
Cdd:COG4160   82 vreswlwpLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVI 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496079708 155 SLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNRQER 219
Cdd:COG4160  162 LMLKATALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLR 226
ArtQ COG4215
ABC-type arginine transport system, permease component [Amino acid transport and metabolism];
15-219 7.50e-63

ABC-type arginine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443361 [Multi-domain]  Cd Length: 238  Bit Score: 195.34  E-value: 7.50e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ------------FG 82
Cdd:COG4215   18 LLAGALVTLELALLSLLLGLVLGLLGALAKLSGNRPLRWLATGYTTVVRGVPDLLLILLLYFGGQIllnaladlfgydGF 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  83 IELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSL 162
Cdd:COG4215   98 IEINPFVAGVLALGFVFGAYATEVFRGAFLAVPKGQIEAARAYGMSRWQVFRRILLPQMWRYALPGLGNNWLVLLKDTAL 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 496079708 163 AATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNRQER 219
Cdd:COG4215  178 VSVIGLVDLVRQAQEAAGSTREPFTFYLAAALIYLALTTVSELVLARLERRASRGVR 234
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 13-216 4.98e-47

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 154.24  E-value: 4.98e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   13 PFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM 92
Cdd:TIGR03004   5 PLLLQGAWVTMQITLAGSVLATVLAFFAGLGRVSGGPILRTVALCYIEVFRGTSLLVQLFWFYFVLPLIGLSLDPVTTGV 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   93 IGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELF 172
Cdd:TIGR03004  85 MVLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLT 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 496079708  173 RQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNR 216
Cdd:TIGR03004 165 FAAQSIRNLTLDTLSIFAITLLCYFVMALIIMLIMRVLERVVRR 208
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 1-214 6.57e-42

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 141.35  E-value: 6.57e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   1 MQESIQLVIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQ 80
Cdd:PRK09494   1 MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLLAGFARAYGGWIANHIALVFIELIRGTPIVVQVMFIYFALPM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  81 F--GIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVK 158
Cdd:PRK09494  81 AfnDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIK 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 496079708 159 DTSLAATIQVPELFRQAQLITS---RTLEVFTmylAASLIYWVMATVLSSLQNYFENQL 214
Cdd:PRK09494 161 DTSLFIVIGVAELTRQGQEIIAgnfRALEIWS---AVAVIYLIITLVLSFILRRLERRM 216
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
15-222 1.15e-41

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 141.35  E-value: 1.15e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQF------------- 81
Cdd:PRK11123   7 LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGSSQLlltlsdgftlnlg 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  82 -----------GIELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLS 150
Cdd:PRK11123  87 fvqipvqmdieNFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496079708 151 NSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQLNRQERDPK 222
Cdd:PRK11123 167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRATRFERRPS 238
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 13-214 4.82e-40

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 136.52  E-value: 4.82e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   13 PFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM 92
Cdd:TIGR03003  11 PTLIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLPDIGIRLPALVAGV 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   93 IGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELF 172
Cdd:TIGR03003  91 LGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELM 170

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 496079708  173 RQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFENQL 214
Cdd:TIGR03003 171 NQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
8-211 3.21e-38

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 132.26  E-value: 3.21e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   8 VIDSAPFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQF---GIE 84
Cdd:PRK15107   9 IVPSLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFlqnVLG 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  85 LDP-----IPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKD 159
Cdd:PRK15107  89 LSPktdirLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQD 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 496079708 160 TSLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSLQNYFE 211
Cdd:PRK15107 169 TSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLK 220
artM PRK11122
arginine ABC transporter permease ArtM;
13-219 6.83e-37

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 128.54  E-value: 6.83e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  13 PFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQF----------G 82
Cdd:PRK11122   6 PELLKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYGPGQFpwlqeypwlwH 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  83 IELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMrRAILPQAARVALPPLSNSFISLVKDTSL 162
Cdd:PRK11122  86 LLSQPWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTL-RILLPYAFKRALSSYSNEVVLVFKSTSL 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 496079708 163 AATIQVPELFRQAQLITSRTLEVfTMYLAASLIYWVMATVLSSLQNYFENQLNRQER 219
Cdd:PRK11122 165 AYTITLMDVMGYSQLLYGRTYDV-MVFGAAGIIYLVVNGLLTLLMRLIERKALAFER 220
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 13-109 2.33e-34

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 118.02  E-value: 2.33e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   13 PFLLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAM 92
Cdd:TIGR01726   3 PFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPLIGIRLSPLTAAV 82

                          90
                  ....*....|....*..
gi 496079708   93 IGLSLNTAAYAAETLRA 109
Cdd:TIGR01726  83 IALTLFYGAYLAEIFRG 99
PRK15069 PRK15069
histidine ABC transporter permease HisM;
16-206 1.86e-31

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 114.76  E-value: 1.86e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  16 LKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLpqFGIEL---------- 85
Cdd:PRK15069  20 FTGLAITLWLLVASVVIGFVLAVPLAIARVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYTGM--YSLEIvrgtdlldaf 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  86 --DPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLA 163
Cdd:PRK15069  98 frSGLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLA 177

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 496079708 164 ATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSSL 206
Cdd:PRK15069 178 FTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISL 220
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 22-219 5.37e-30

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 114.47  E-value: 5.37e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  22 TLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGL----------------------- 78
Cdd:COG4597   95 TLLVAVLGIVLATILGFLVGIARLSSNWLVSKLATVYVEIFRNIPLLLQIFFWYFAVlealpsprqslslfdgvflnnrg 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  79 -----PQFGIELDPIPAAMI------------------------------------------------------------ 93
Cdd:COG4597  175 lylpaPVFEPGFGWVLAALLaaivaafvlrrwarrrqeatgqrfpvwwislallvglpllaflllgaplsldypelkgfn 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  94 ----------------GLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLV 157
Cdd:COG4597  255 frggltlspefvalllALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQYLNLT 334

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708 158 KDTSLAATIQVPELFR-QAQLI---TSRTLEVFTM----YLAASLIywvmatvLSSLQNYFENQLNRQER 219
Cdd:COG4597  335 KNSSLAVAIGYPDLVSvFAGTTlnqTGQAIEIIAItmavYLTISLL-------ISLLMNWYNRRVALVER 397
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 22-204 5.87e-25

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 96.58  E-value: 5.87e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  22 TLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQFG---IELDPIPAAMIGLSLN 98
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLgwgILPGLGLPALILALLL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  99 TAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLI 178
Cdd:cd06261   84 IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPGTGL 163

                        170       180
                 ....*....|....*....|....*.
gi 496079708 179 TSRTLEVFTMYLAASLIYWVMATVLS 204
Cdd:cd06261  164 LLIFAILFPGDLGVAAAVALILLLLS 189
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
15-202 1.68e-23

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 93.70  E-value: 1.68e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGFILALMRMSPLWPVKWLARMYISIFRGTPLIAQLFMIYYGLPQF-----------GI 83
Cdd:PRK15135   9 ILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIAlnsvtealgvgQI 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  84 ELDPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLA 163
Cdd:PRK15135  89 DIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALV 168

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 496079708 164 ATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATV 202
Cdd:PRK15135 169 SLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTV 207
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 33-211 4.74e-17

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 75.80  E-value: 4.74e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708   33 GLVLGFILALMRMsplWPVKWLARMYISIFRGTPLIAQLFMIYYgLPQFGIELDPIPAAMIGLSLNTAAYAAETLRAAIA 112
Cdd:pfam00528   1 GIPLGIIAALRRG---RRLDRLLRPLIDLLQALPSFVLAILLVV-IAILSILGHGILPAIILALLGWAGYARLIRRAALR 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  113 SIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATI----QVPELFRQAQLItSRTLEVFTM 188
Cdd:pfam00528  77 SLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILG-YDYPEIQGP 155

                         170       180
                  ....*....|....*....|...
gi 496079708  189 YLAASLIYWVMATVLSSLQNYFE 211
Cdd:pfam00528 156 VLAAALILLLLNLLVDILQRLLD 178
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 15-142 1.77e-13

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 67.03  E-value: 1.77e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGFILALM---RMSPLWPVKWLARMYISIFRGTP--LIAQLFMIYYGLPQFgieldpip 89
Cdd:COG3639   49 LLSALLETLAIALLGTLLGAVLALPLAFLaarNLAPNPWVRLLARRLLNVLRAIPelVWALIFVAAVGLGPF-------- 120

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 496079708  90 AAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAA 142
Cdd:COG3639  121 AGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVL 173
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
11-143 5.75e-11

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 61.33  E-value: 5.75e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  11 SAPFLLKGAVFTLQLSIGGMFFGLVLGFILA-LMRMSPLWPVKWLARM---------------YISIFRGTPLIAQLFMI 74
Cdd:COG1178   48 SDPYLWRALGNTLLLALLVTLLSLLLGVPLAwLLARTDFPGRRLLRWLlllplalppyvvalaWIALFGPNGLLNTLLRA 127

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 496079708  75 YYGLPQFGIEldPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAAR 143
Cdd:COG1178  128 LFGLEPPDIY--GLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRP 194
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 15-166 6.76e-09

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 53.91  E-value: 6.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFF----GLVLGFILALMRMSPLWPVKWLAR---MYISIFRGTPLIAQLFMIyygLP-------- 79
Cdd:COG2011   12 LLQATGETLYMVGVSTLIavllGLPLGVLLVLTRPGGLLPNPVLYRvlgVIVNIFRSIPFIILLVAL---IPltrlivgt 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  80 QFGIEldpipAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQaarvALPPLSNS----FIS 155
Cdd:COG2011   89 SIGTT-----AAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPE----ALPSLILGltvtLIS 159

                        170
                 ....*....|.
gi 496079708 156 LVKDTSLAATI 166
Cdd:COG2011  160 LIGYSAMAGAV 170
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 11-141 1.77e-06

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 47.45  E-value: 1.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  11 SAPFLLKGAVFTLQLSIGGMFFGLVLGFILALM--RMSPLWPVKWLA------------RMY--ISIFRGTPLIAQLFMi 74
Cdd:COG1176   61 TDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFlaRAPPRWRNLLLLlvilpfwtsflvRTYawIVLLGRNGLLNSLLL- 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496079708  75 yyglpQFGIELDPIP------AAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQA 141
Cdd:COG1176  140 -----ALGLIDEPLRllytefAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLS 207
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 15-142 3.46e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 46.29  E-value: 3.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGFILA-LMRMSPLwpVKWLARMYISIFRGTPLIA--QLFMIYYGLPqfgieldpIPAA 91
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGlLLGLSRL--LRRLLDPLLVFLRPIPPLAlaPLLILWFGIG--------EASK 128

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 496079708  92 MIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAA 142
Cdd:COG0600  129 IFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAAL 179
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
13-164 4.90e-05

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 43.61  E-value: 4.90e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  13 PFLLKGAVFTLQLSIGGMFFGLVLGFILAlmrmsplwpvkWLARMYISifRGTPLIAQLFMIYYGLP---------QFGI 83
Cdd:COG1178  334 PSLLRALLNSLLLALLAALLAVLLALLLA-----------YLVRRRRG--RLARLLDRLAMLPYAVPgivlglgllLLFN 400

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  84 ELDPIP--AAMIGLSLNTA----AYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLV 157
Cdd:COG1178  401 RPLPLLlyGTLAILVLAYVvrflPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSM 480


                 ....*..
gi 496079708 158 KDTSLAA 164
Cdd:COG1178  481 KELSATL 487
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 15-142 1.09e-04

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 42.02  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGFILALmrmsplwpvkWLARMYisiFRGTPLIAQLFMIYYGLP-------------QF 81
Cdd:COG1177   59 LLDALLNSLLIALLSTLLATVLGTPAAL----------ALARYR---FRGRRLLLALLLLPLVVPgivlgvallllfsAL 125

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 496079708  82 GIELdPIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAA 142
Cdd:COG1177  126 GLSG-GLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIA 185
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-152 1.47e-04

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 41.26  E-value: 1.47e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  15 LLKGAVFTLQLSIGGMFFGLVLGF----ILALMRMSPLWPVKWLARMY---ISIFRGTPLIAQL-FMIYYGLPQFGIELD 86
Cdd:PRK10782   9 LVRGVWETLAMTFVSGFFGFVIGLpvgvLLYVTRPGQIIANAKLYRTLsalVNIFRSIPFIILLvWMIPFTRVIVGTSIG 88

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496079708  87 pIPAAMIGLSLNTAAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQaarvALPPLSNS 152
Cdd:PRK10782  89 -LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPE----ALPGLVNA 149
cysT CHL00187
sulfate transport protein; Provisional
 88-139 2.01e-04

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 41.15  E-value: 2.01e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 496079708  88 IPAAMIGLSLntaAYAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILP 139
Cdd:CHL00187 140 VLLAMIFVSF---PFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFP 188
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 102-143 4.20e-04

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 40.12  E-value: 4.20e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 496079708 102 YAAETLRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQAAR 143
Cdd:COG0555  150 FVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLP 191
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 23-166 5.78e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 39.65  E-value: 5.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496079708  23 LQLSIGGMFFGLVLGFILALMrmspLWPVKWLARMYI---SIFRGTPLIAQLFMIyygLPQFGIelDPIPAaMIGLSL-- 97
Cdd:COG1174   24 LLLVLLALLIALLIAVPLGIL----ITRRRRLAGLVLgvaNILQTIPSLALLALL---IPLLGI--GPAPA-IIALVLya 93

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496079708  98 ------NTAAyaaetlraAIASIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDTSLAATI 166
Cdd:COG1174   94 llpilrNTYT--------GLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALI 160
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 107-141 1.04e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 39.22  E-value: 1.04e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 496079708 107 LRAAIASIDKGQWEAAASIGMTPWQTMRRAILPQA 141
Cdd:PRK15050 180 LLAAFAQLDARQLEAAASLGASPWRVARRVILPEA 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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