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Conserved domains on  [gi|496156184|ref|WP_008880691|]
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MULTISPECIES: NADH-quinone oxidoreductase subunit A [Geobacillus]

Protein Classification

NADH-quinone oxidoreductase subunit A( domain architecture ID 10012962)

NADH-quinone oxidoreductase subunit A (NuoA) is part of the membrane domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

PubMed:  23417064

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-122 5.77e-73

NADH-quinone oxidoreductase subunit A;


:

Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 213.07  E-value: 5.77e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   1 MSNIYANSYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVF 80
Cdd:PRK07756   1 MASVYENSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 496156184  81 LYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRWM 122
Cdd:PRK07756  81 LYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQWL 122
 
Name Accession Description Interval E-value
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-122 5.77e-73

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 213.07  E-value: 5.77e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   1 MSNIYANSYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVF 80
Cdd:PRK07756   1 MASVYENSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 496156184  81 LYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRWM 122
Cdd:PRK07756  81 LYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQWL 122
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-121 2.41e-48

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 150.27  E-value: 2.41e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   5 YANSYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPW 84
Cdd:COG0838    1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 496156184  85 AVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:COG0838   81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
27-120 1.18e-43

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 137.94  E-value: 1.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   27 LTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFALVEMIIFIVLL 106
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 496156184  107 AIGLIYAWKKKVLR 120
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-122 5.77e-73

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 213.07  E-value: 5.77e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   1 MSNIYANSYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVF 80
Cdd:PRK07756   1 MASVYENSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 496156184  81 LYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRWM 122
Cdd:PRK07756  81 LYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQWL 122
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-121 2.41e-48

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 150.27  E-value: 2.41e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   5 YANSYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPW 84
Cdd:COG0838    1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 496156184  85 AVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:COG0838   81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
27-120 1.18e-43

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 137.94  E-value: 1.18e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   27 LTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFALVEMIIFIVLL 106
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 496156184  107 AIGLIYAWKKKVLR 120
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
ndhC CHL00022
NADH dehydrogenase subunit 3
 9-121 1.55e-41

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 133.19  E-value: 1.55e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   9 YLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVY 88
Cdd:CHL00022   7 YDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86

                         90       100       110
                 ....*....|....*....|....*....|...
gi 496156184  89 DQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:CHL00022  87 DVLGVSAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 8-121 3.95e-41

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 132.30  E-value: 3.95e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   8 SYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVV 87
Cdd:PRK06602   7 HYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVS 86

                         90       100       110
                 ....*....|....*....|....*....|....
gi 496156184  88 YDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:PRK06602  87 FREIGWLGFVEAMIFILVLLVGLVYLWRKGALDW 120
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
6-121 6.90e-25

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 91.27  E-value: 6.90e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   6 ANSYLIVFVFLCLG----VLLPIGALTIGRWLRPNVPDEAKATTYESGNIPF-HDSRIQFQvrYYLFALLFVIFDVETVF 80
Cdd:PRK08489   7 SHPYFGVFVLLVLTfvafFLTTRLARFISRKLAQKNTEKLKLAIYECGPEPVkQPNRISSH--FYIMALLFILFDVEIVF 84

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 496156184  81 LYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:PRK08489  85 MFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 7-121 1.10e-24

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 90.50  E-value: 1.10e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   7 NSYLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESG--NIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPW 84
Cdd:PRK07928   2 NVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGiePTPQPAGGGRFPVKYYLTAMLFIVFDIEIVFLYPW 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 496156184  85 AVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:PRK07928  82 AVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 9-121 7.54e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 88.23  E-value: 7.54e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   9 YLIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVY 88
Cdd:MTH00055   5 FLGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVY 84

                         90       100       110
                 ....*....|....*....|....*....|...
gi 496156184  89 DQLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:MTH00055  85 NQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 12-121 1.43e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 77.41  E-value: 1.43e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  12 VFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQL 91
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 496156184  92 GLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 38-121 2.10e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 72.27  E-value: 2.10e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  38 PDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAWKKK 117
Cdd:MTH00030  39 PDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIKG 118


                 ....
gi 496156184 118 VLRW 121
Cdd:MTH00030 119 GLEW 122
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 10-121 3.32e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 61.07  E-value: 3.32e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  10 LIVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWaVVYD 89
Cdd:MTH00203   2 NLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPL-PWSN 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 496156184  90 QLGLFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:MTH00203  81 QLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 10-122 5.63e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 60.26  E-value: 5.63e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  10 LIVFVFLCLGVLLPIGALTIGRWLRP-NVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVY 88
Cdd:MTH00148   2 LSILLSLLFALILSPVLLLLGLVLSKrSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 496156184  89 DQLGLFALVEM-IIFIVLLAIGLIYAWKKKVLRWM 122
Cdd:MTH00148  82 GSSFSVWSLTSlFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 11-121 6.00e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 60.39  E-value: 6.00e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  11 IVFVFLCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLY--PWAVVY 88
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 496156184  89 DQLGLFALVEMIIFIvLLAIGLIYAWKKKVLRW 121
Cdd:MTH00069  81 NTPTNTLFWSTLILI-LLTLGLIYEWIQGGLEW 112
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 13-121 8.02e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 60.00  E-value: 8.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  13 FVFLCLGVLLPIGALTI-GRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQL 91
Cdd:MTH00042   4 LIFFLLIILILTSLLLLaGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLIT 83

                         90       100       110
                 ....*....|....*....|....*....|.
gi 496156184  92 GLFALVEM-IIFIVLLAIGLIYAWKKKVLRW 121
Cdd:MTH00042  84 NPSTLLPIsLIFLIILTIGLVYEWVNGGLEW 114
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 35-122 2.33e-12

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 59.44  E-value: 2.33e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  35 PNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFALVEMIIFIVLLAIGLIYAW 114
Cdd:PRK06432  56 PPGSDQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAF 135


                 ....*...
gi 496156184 115 KKKVLRWM 122
Cdd:PRK06432 136 KMGYMRWL 143
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 39-121 1.56e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 56.71  E-value: 1.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  39 DEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFA-LVEMIIFIVLLAIGLIYAWKKK 117
Cdd:MTH00161  30 DREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSwLITSSFFILILLLGLYYEWNQG 109


                 ....
gi 496156184 118 VLRW 121
Cdd:MTH00161 110 ALEW 113
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 21-122 1.39e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 54.12  E-value: 1.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  21 LLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYP--WAVvydQLG--LFAL 96
Cdd:MTH00113  12 ALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAI---NLTtpTTTL 88

                         90       100
                 ....*....|....*....|....*.
gi 496156184  97 VEMIIFIVLLAIGLIYAWKKKVLRWM 122
Cdd:MTH00113  89 TWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 39-121 3.57e-10

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 53.32  E-value: 3.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  39 DEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWAVVYDQLGLFALV-EMIIFIVLLAIGLIYAWKKK 117
Cdd:MTH00012  32 DREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVyTSILFLLILVIGLIHEWREG 111


                 ....
gi 496156184 118 VLRW 121
Cdd:MTH00012 112 SLDW 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-121 9.62e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 52.23  E-value: 9.62e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  16 LCLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYP--WAvvyDQLG- 92
Cdd:MTH00136   8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPlpWG---DQLPs 84

                         90       100       110
                 ....*....|....*....|....*....|
gi 496156184  93 -LFALVEMIIFIVLLAIGLIYAWKKKVLRW 121
Cdd:MTH00136  85 pLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 42-121 1.90e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 51.09  E-value: 1.90e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184  42 KATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLY--PWAVVYDQLGLFaLVEMIIFIVLLAIGLIYAWKKKVL 119
Cdd:MTH00106  33 KASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNTM-LTMALLLISLLALSLAYEWTQKGL 111


                 ..
gi 496156184 120 RW 121
Cdd:MTH00106 112 EW 113
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 6-115 3.73e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 39.98  E-value: 3.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496156184   6 ANSYLIVFVflcLGVLLPIGALTIGRWLRPNVPDEAKATTYESGNIPFHDSRIQFQVRYYLFALLFVIFDVETVFLYPWA 85
Cdd:PRK06073   7 ALAFGLVIV---LGLAAGVGTYKLLKLILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIA 83

                         90       100       110
                 ....*....|....*....|....*....|
gi 496156184  86 VVYDQLGLFALVEMIIFIVLLAIGLIYAWK 115
Cdd:PRK06073  84 FAPYYTFRDLLLLIVVALVLMYPVLYYAYK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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