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Conserved domains on  [gi|496245769|ref|WP_008959154|]
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MULTISPECIES: 50S ribosomal protein L36 [Halomonadaceae]

Protein Classification

ribosomal protein bL36( domain architecture ID 10011449)

ribosomal protein bL36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 9.35e-13

50S ribosomal protein L36; Reviewed


:

Pssm-ID: 179039  Cd Length: 37  Bit Score: 54.19  E-value: 9.35e-13
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 496245769  1 MKVRASVKKMCRNCKIIRRNGAVRVICSEPRHKQRQG 37
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 9.35e-13

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 54.19  E-value: 9.35e-13
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 496245769  1 MKVRASVKKMCRNCKIIRRNGAVRVICSEPRHKQRQG 37
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 1.67e-10

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 48.58  E-value: 1.67e-10
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 496245769  1 MKVRASVKKMCRNCKIIRRNGAVRVICS-EPRHKQRQG 37
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKkNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 6.40e-10

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 47.12  E-value: 6.40e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 496245769   1 MKVRASVKKMCRNCKIIRRNGAVRVICSE-PRHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKnPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 2.93e-07

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 40.55  E-value: 2.93e-07
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 496245769   1 MKVRASVKKMCRNCKIIRRNGAVRVICSEPRHKQRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
 
Name Accession Description Interval E-value
rpmJ PRK00465
50S ribosomal protein L36; Reviewed
 1-37 9.35e-13

50S ribosomal protein L36; Reviewed


Pssm-ID: 179039  Cd Length: 37  Bit Score: 54.19  E-value: 9.35e-13
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 496245769  1 MKVRASVKKMCRNCKIIRRNGAVRVICSEPRHKQRQG 37
Cdd:PRK00465  1 MKVRASVKKICEKCKVIKRKGVVRVICENPKHKQRQG 37
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-37 1.67e-10

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 48.58  E-value: 1.67e-10
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 496245769  1 MKVRASVKKMCRNCKIIRRNGAVRVICS-EPRHKQRQG 37
Cdd:COG0257   1 MKVRASVKKICRDCKVVRRKGRVYVICKkNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
1-37 6.40e-10

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 47.12  E-value: 6.40e-10
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 496245769   1 MKVRASVKKMCRNCKIIRRNGAVRVICSE-PRHKQRQG 37
Cdd:pfam00444  1 MKVRSSLKKRCEDCKVVRRKGRVYVICKKnPRHKQRQG 38
rpmJ_bact TIGR01022
ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in ...
 1-37 2.93e-07

ribosomal protein L36, bacterial type; Proteins found by this model occur exclusively in bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 130094  Cd Length: 37  Bit Score: 40.55  E-value: 2.93e-07
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 496245769   1 MKVRASVKKMCRNCKIIRRNGAVRVICSEPRHKQRQG 37
Cdd:TIGR01022  1 MKVRASVKKICEKCKIIKRKGVVRVICKNPKHKQRQG 37
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-37 3.37e-03

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 30.35  E-value: 3.37e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 496245769  1 MKVRASVKKM---CRNCKIIRRNGAVRVIC-SEPRHKQRQG 37
Cdd:PRK00831  1 MKVRNSLKSLknrHRDCQVVRRKGRVYVINkKNPRFKARQG 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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