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Conserved domains on  [gi|496306690|ref|WP_009015868|]
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MULTISPECIES: hypothetical protein [Acidaminococcus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Abhydrolase super family cl21494
alpha/beta hydrolases; A functionally diverse superfamily containing proteases, lipases, ...
21-49 5.44e-03

alpha/beta hydrolases; A functionally diverse superfamily containing proteases, lipases, peroxidases, esterases, epoxide hydrolases and dehalogenases. The catalytic apparatus typically involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine, and often the mechanism involves a nucleophilic attack on a carbonyl carbon atom.


The actual alignment was detected with superfamily member pfam11187:

Pssm-ID: 473884 [Multi-domain]  Cd Length: 224  Bit Score: 36.52  E-value: 5.44e-03
                          10        20
                  ....*....|....*....|....*....
gi 496306690   21 GNLAFAAPSASKDALSRKVIAFYCFDGTG 49
Cdd:pfam11187  95 GNLAIYAAMNAEPDLQDRIIKIYSFDGPG 123
 
Name Accession Description Interval E-value
Mbeg1-like pfam11187
Mbeg1-like; This family includes a group of uncharacterized proteins from bacteria. Recently, ...
21-49 5.44e-03

Mbeg1-like; This family includes a group of uncharacterized proteins from bacteria. Recently, a member from Gemella sanguinis M325, Mbeg1 (for "microbiome bacteria effector gene") has been identified as the first example of this protein family being associated with a potential effector function in the human microbiome.


Pssm-ID: 402661 [Multi-domain]  Cd Length: 224  Bit Score: 36.52  E-value: 5.44e-03
                          10        20
                  ....*....|....*....|....*....
gi 496306690   21 GNLAFAAPSASKDALSRKVIAFYCFDGTG 49
Cdd:pfam11187  95 GNLAIYAAMNAEPDLQDRIIKIYSFDGPG 123
 
Name Accession Description Interval E-value
Mbeg1-like pfam11187
Mbeg1-like; This family includes a group of uncharacterized proteins from bacteria. Recently, ...
21-49 5.44e-03

Mbeg1-like; This family includes a group of uncharacterized proteins from bacteria. Recently, a member from Gemella sanguinis M325, Mbeg1 (for "microbiome bacteria effector gene") has been identified as the first example of this protein family being associated with a potential effector function in the human microbiome.


Pssm-ID: 402661 [Multi-domain]  Cd Length: 224  Bit Score: 36.52  E-value: 5.44e-03
                          10        20
                  ....*....|....*....|....*....
gi 496306690   21 GNLAFAAPSASKDALSRKVIAFYCFDGTG 49
Cdd:pfam11187  95 GNLAIYAAMNAEPDLQDRIIKIYSFDGPG 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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