NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|496375755|ref|WP_009084745|]
View 

MULTISPECIES: hypothetical protein [Elizabethkingia]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
NusG_II super family cl45996
NusG domain II; This domain is found in some NusG proteins where it forms domain II. However ...
 4-58 6.70e-03

NusG domain II; This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.


The actual alignment was detected with superfamily member pfam07009:

Pssm-ID: 462066  Cd Length: 107  Bit Score: 34.81  E-value: 6.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 496375755    4 ISLTILFSLLSLITFAQS----LKVVIKQNGKVVQpvnnVYELKKSTFQFEITSTNLEG 58
Cdd:pfam07009   2 IAALLILSFLSLFLLLGSskggKYAVITVDGKVVK----TIPLSKVDEDYTIEIKGEGG 56
 
Name Accession Description Interval E-value
NusG_II pfam07009
NusG domain II; This domain is found in some NusG proteins where it forms domain II. However ...
 4-58 6.70e-03

NusG domain II; This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.


Pssm-ID: 462066  Cd Length: 107  Bit Score: 34.81  E-value: 6.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 496375755    4 ISLTILFSLLSLITFAQS----LKVVIKQNGKVVQpvnnVYELKKSTFQFEITSTNLEG 58
Cdd:pfam07009   2 IAALLILSFLSLFLLLGSskggKYAVITVDGKVVK----TIPLSKVDEDYTIEIKGEGG 56
 
Name Accession Description Interval E-value
NusG_II pfam07009
NusG domain II; This domain is found in some NusG proteins where it forms domain II. However ...
 4-58 6.70e-03

NusG domain II; This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.


Pssm-ID: 462066  Cd Length: 107  Bit Score: 34.81  E-value: 6.70e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 496375755    4 ISLTILFSLLSLITFAQS----LKVVIKQNGKVVQpvnnVYELKKSTFQFEITSTNLEG 58
Cdd:pfam07009   2 IAALLILSFLSLFLLLGSskggKYAVITVDGKVVK----TIPLSKVDEDYTIEIKGEGG 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH