|
Name |
Accession |
Description |
Interval |
E-value |
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
1-361 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 601.86 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 1 MENFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDDTGFAFNIY 80
Cdd:PRK14970 1 MENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 81 ELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
Cdd:PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 161 IYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNILDYDYYLQ 240
Cdd:PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 241 IADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTKAKYVEQSQKWTAQELIDALE 320
Cdd:PRK14970 241 VTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQSFLLSGID 320
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 496385745 321 ICNQADINYKNSKNQRLTVEIALMQLASLSVSDATKKKSLE 361
Cdd:PRK14970 321 IANDCDLKYKLSKNQRLLVELALMQLASINFDGISAKKKLS 361
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
1-361 |
0e+00 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 596.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 1 MENFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN--------EKSGA--- 69
Cdd:PRK14971 1 MENYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINcqnltadgEACNEces 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 70 --SDDTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTE 147
Cdd:PRK14971 81 cvAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 148 KHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAA 227
Cdd:PRK14971 161 KHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 228 ETLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTKAKYVEQS 307
Cdd:PRK14971 241 ENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 496385745 308 QKWTAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASLSVSDATKKKSLE 361
Cdd:PRK14971 321 QKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQKGDDASGGRG 374
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
5-347 |
7.77e-153 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 434.30 E-value: 7.77e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 5 IVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDD------------ 72
Cdd:TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEpcnecesckein 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 73 TGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKII 152
Cdd:TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 153 PTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNI 232
Cdd:TIGR02397 162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLGL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 233 LDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLM-MAQNPNtiNLIEVGEKTKAKYVEQSQKWT 311
Cdd:TIGR02397 242 VDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLlIKKTPS--NLLAVLESEQEFLKELALKLS 319
|
330 340 350
....*....|....*....|....*....|....*.
gi 496385745 312 AQELIDALEICNQADINYKNSKNQRLTVEIALMQLA 347
Cdd:TIGR02397 320 LEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
9-362 |
5.82e-145 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 421.59 E-value: 5.82e-145
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEK------------------SGAS 70
Cdd:PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLnppdgepcneceickaitNGSL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 71 DDtgfafnIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHK 150
Cdd:PRK05563 88 MD------VIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 151 IIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETL 230
Cdd:PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 231 NILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTKAKYVEQSQKW 310
Cdd:PRK05563 242 GSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEKL 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 496385745 311 TAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASLSVSDATKKKSLES 362
Cdd:PRK05563 322 DIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAAASPEYDTELEV 373
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
13-347 |
2.53e-138 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 396.87 E-value: 2.53e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 13 PLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDD------------TGFAFNIY 80
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEpcgecescraiaAGSHPDVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 81 ELDA-ASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159
Cdd:COG2812 86 EIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRC 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 160 QIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRlttftqrnitlakaAETLNILDY-DYY 238
Cdd:COG2812 166 QRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQ--------------AIAFGLLDRrELL 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 239 LQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIeVGEKTKAKYVEQSQKWTAQELIDA 318
Cdd:COG2812 232 LDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELL-VNEDERERLQELARRLSPERLLRA 310
|
330 340
....*....|....*....|....*....
gi 496385745 319 LEICNQADINYKNSKNQRLTVEIALMQLA 347
Cdd:COG2812 311 IQILLEARRELERNVNPRLALEMLLLRLA 339
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
9-345 |
4.94e-112 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 338.32 E-value: 4.94e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN----EKSG---------ASDDTGF 75
Cdd:PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNcttnDPKGrpcgtcemcRAIAEGS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 76 AFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155
Cdd:PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 156 LSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNILDY 235
Cdd:PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGISGD 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 236 DYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTKAKYVEQSQKWTAQEL 315
Cdd:PRK14950 248 EEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQIANLEAL 327
|
330 340 350
....*....|....*....|....*....|
gi 496385745 316 IDALEICNQADINYKNSKNQRLTVEIALMQ 345
Cdd:PRK14950 328 TKWVKAFSQLDFQLRTTSYGQLPLELAVIE 357
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
3-350 |
1.18e-108 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 329.39 E-value: 1.18e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 3 NFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDD---------- 72
Cdd:PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEpcnvcppcve 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 73 --TGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHK 150
Cdd:PRK14965 82 itEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 151 IIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETL 230
Cdd:PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 231 NILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQN-PNTINLIEVGEKTKAKYVEQSQK 309
Cdd:PRK14965 242 GVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAvGEPGDLLDLSEAELAELRAQAAA 321
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 496385745 310 WTAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASLS 350
Cdd:PRK14965 322 ADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLA 362
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
10-346 |
3.58e-107 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 326.92 E-value: 3.58e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINekSGASDD----------------T 73
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKptpepcgkcelcraiaA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQrNITLAKAAETLNIL 233
Cdd:PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPG-PITPEAVWDLLGAV 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 234 DYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDL-MMAQNPNTINLIEVGEKTKAKYVEQSQKWTA 312
Cdd:PRK14948 246 PEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLlLAKTAPNRPDLVAVSQQTWDELCKLAKQINL 325
|
330 340 350
....*....|....*....|....*....|....
gi 496385745 313 QELIDALEICNQADINYKNSKNQRLTVEIALMQL 346
Cdd:PRK14948 326 ERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGL 359
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
6-349 |
1.05e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 325.74 E-value: 1.05e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN---------------EKSGAS 70
Cdd:PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNcqrmiddpvylqevtEPCGEC 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 71 D-----DTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILAT 145
Cdd:PRK14954 85 EscrdfDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 146 TEKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFT-----QRN 220
Cdd:PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSvgseaEKV 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 221 ITLAKAAETLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTK 300
Cdd:PRK14954 245 IAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPESVK 324
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 496385745 301 AKYVEQSQKWTAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASL 349
Cdd:PRK14954 325 ERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL 373
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
6-362 |
8.37e-106 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 316.06 E-value: 8.37e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN---------------EKSGAS 70
Cdd:PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNcqrmiddadylqevtEPCGEC 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 71 D-----DTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILAT 145
Cdd:PRK14955 85 EscrdfDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 146 TEKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFT-----QRN 220
Cdd:PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSvesegEGS 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 221 ITLAKAAETLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTK 300
Cdd:PRK14955 245 IRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPDAVR 324
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 496385745 301 AKYVEQSQKWTAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASLSVSDAT----------KKKSLES 362
Cdd:PRK14955 325 ERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAPTaaaaptggaqKKKPLLS 396
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
3-361 |
5.96e-94 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 295.57 E-value: 5.96e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 3 NFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN-----------EKSGASD 71
Cdd:PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNcshktdllepcQECIENV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 72 DTgfAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKI 151
Cdd:PRK07133 84 NN--SLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 152 IPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLN 231
Cdd:PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFG 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 232 ILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTKAKYVEQSQKwT 311
Cdd:PRK07133 242 LVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKIDDD-F 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 496385745 312 AQELIDALeICNQADINYknSKNQRLTVEIALMQLASLSVSDATKKKSLE 361
Cdd:PRK07133 321 AYKFIEIL-FDLLKDLKI--SDNPNDTLEILIIKLLALSELEEEDENEIK 367
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
6-211 |
2.18e-92 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 287.95 E-value: 2.18e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKsGASDDTGFAF-------- 77
Cdd:PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE-GPDGDGGPTIdlcgvgeh 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 78 ----------NIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTE 147
Cdd:PRK09111 92 cqaimegrhvDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 496385745 148 KHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFD 211
Cdd:PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLD 235
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
6-362 |
7.46e-91 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 283.20 E-value: 7.46e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGA------------SDDT 73
Cdd:PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPtpmpcgecssckSIDN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK06647 165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLT 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 234 DYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTiNLIEVGEKTKaKYVEQSQKWTAQ 313
Cdd:PRK06647 245 GDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIK-NEAFIGIKAE-RLPEKLREFDLS 322
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 496385745 314 ELIDALEICNQA--DINYknSKNQRLTVEIALMQLASLS--VSDATKKKSLES 362
Cdd:PRK06647 323 QIERAISVLLETyrDLQF--SVNPRYELEINFSKILRLKdyVPNHELIKQIQD 373
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
3-284 |
1.07e-89 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 277.86 E-value: 1.07e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 3 NFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN-------EKSGASD---- 71
Cdd:PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNclnpqegEPCGKCEncve 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 72 -DTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHK 150
Cdd:PRK14953 82 iDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 151 IIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETL 230
Cdd:PRK14953 162 IPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFL 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 496385745 231 NILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMA 284
Cdd:PRK14953 242 GIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLN 295
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
1-319 |
4.21e-88 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 272.42 E-value: 4.21e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 1 MENFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD--------- 71
Cdd:PRK06305 1 MTSYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDqepcnqcas 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 72 ----DTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTE 147
Cdd:PRK06305 81 ckeiSSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 148 KHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAA 227
Cdd:PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 228 ETLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNpntinlievgektKAKYVEQS 307
Cdd:PRK06305 241 KALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQY-------------NKQLSSVA 307
|
330
....*....|....*
gi 496385745 308 QKWTAQ---ELIDAL 319
Cdd:PRK06305 308 TKYSSEqllEIIDFL 322
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
3-305 |
8.86e-88 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 276.34 E-value: 8.86e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 3 NFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN---EKSG---------AS 70
Cdd:PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINclnPKDGdccnscsvcES 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 71 DDTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHK 150
Cdd:PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 151 IIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETL 230
Cdd:PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTF 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496385745 231 NILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLIEVGEKTKAKYVE 305
Cdd:PRK05896 242 GLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLN 316
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
9-285 |
1.15e-86 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 270.56 E-value: 1.15e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN-----------------EKSGASD 71
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNcsgedpkpcgecesclaVRRGAHP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 72 DtgfafnIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKI 151
Cdd:PRK14963 86 D------VLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 152 IPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTfTQRNITLAKAAETLN 231
Cdd:PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLA-LGTPVTRKQVEEALG 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 496385745 232 ILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQ 285
Cdd:PRK14963 239 LPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAE 292
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
6-254 |
1.65e-83 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 263.15 E-value: 1.65e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD------------DT 73
Cdd:PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTAtpcgvcsacleiDS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK14969 165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAI 244
|
250 260
....*....|....*....|.
gi 496385745 234 DYDYYLQIADFAKSNDIPGIL 254
Cdd:PRK14969 245 DQDYLFALLEALLAQDGAALL 265
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
6-241 |
3.20e-81 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 260.18 E-value: 3.20e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD------------DT 73
Cdd:PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITAtpcgecdncreiEQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTL 244
|
....*...
gi 496385745 234 DYDYYLQI 241
Cdd:PRK07994 245 DDDQALSL 252
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
9-271 |
1.08e-79 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 251.61 E-value: 1.08e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN-EK-----------SGASDDTGFA 76
Cdd:PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNcENrkgvepcnecrACRSIDEGTF 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 77 FNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156
Cdd:PRK14962 86 MDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTII 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 157 SRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNILDYD 236
Cdd:PRK14962 166 SRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIE 245
|
250 260 270
....*....|....*....|....*....|....*
gi 496385745 237 YYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFI 271
Cdd:PRK14962 246 VVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLI 280
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
6-234 |
3.72e-78 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 249.18 E-value: 3.72e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD---DT--------- 73
Cdd:PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSStpcDTciqcqsale 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK08451 163 TILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGLL 242
|
.
gi 496385745 234 D 234
Cdd:PRK08451 243 D 243
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
4-264 |
1.21e-77 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 252.10 E-value: 1.21e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 4 FIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINeKSGASDDTGFA------- 76
Cdd:PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN-CTGADGEGGITaqpcgqc 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 77 ----------FNIY-ELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILAT 145
Cdd:PRK12323 82 racteidagrFVDYiEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 146 TEKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAK 225
Cdd:PRK12323 162 TDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEA 241
|
250 260 270
....*....|....*....|....*....|....*....
gi 496385745 226 AAETLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKG 264
Cdd:PRK12323 242 VRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRS 280
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-271 |
1.21e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 246.78 E-value: 1.21e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 2 ENFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN-----------EKSGAS 70
Cdd:PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNcenpignepcnECTSCL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 71 DDT-GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKH 149
Cdd:PRK14956 83 EITkGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 150 KIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAET 229
Cdd:PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 496385745 230 LNILDYDYYlqiADFAKSNDIPGILSKLNEIV----NKGFDPHIFI 271
Cdd:PRK14956 243 IGYHGIEFL---TSFIKSLIDPDNHSKSLEILeslyQEGQDIYKFL 285
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
4-243 |
1.26e-74 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 242.31 E-value: 1.26e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 4 FIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN--EKSGASD---------- 71
Cdd:PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNcqGPDGQGGitatpcgvcq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 72 -----DTGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATT 146
Cdd:PRK14951 83 acrdiDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 147 EKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKA 226
Cdd:PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAV 242
|
250
....*....|....*..
gi 496385745 227 AETLNILDYDYYLQIAD 243
Cdd:PRK14951 243 RQMLGSVDRSHVFRLID 259
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
6-266 |
6.30e-74 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 242.69 E-value: 6.30e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD------------DT 73
Cdd:PRK08691 5 VLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGepcgvcqsctqiDA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK08691 85 GRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAV 244
|
250 260 270
....*....|....*....|....*....|....*
gi 496385745 234 DYDYYLQIADFAKSNDIPGILSKLNEIVNK--GFD 266
Cdd:PRK08691 245 DKQYLYELLTGIINQDGAALLAKAQEMAACavGFD 279
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
9-354 |
1.73e-73 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 238.63 E-value: 1.73e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSG---------------ASDDT 73
Cdd:PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGptatpcgvcescvalAPNGP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GfAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK14952 85 G-SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRL--------TTFtQRNITLAK 225
Cdd:PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLlagaadthVTY-QRALGLLG 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 226 AAETlnILDYDYYLQIAdfakSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQ---NPNTINLIEVGEKTKAK 302
Cdd:PRK14952 243 ATDV--ALIDDAVDALA----ADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQavpDAAARGVVDAPEDVLER 316
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 496385745 303 YVEQSQKWTAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASLSVSDA 354
Cdd:PRK14952 317 MREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSASDA 368
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
8-262 |
1.21e-72 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 233.91 E-value: 1.21e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 8 ARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSG-ASDDTGFAFN-------- 78
Cdd:PRK14964 4 ALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGpTSDPCGTCHNcisiknsn 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 79 ---IYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155
Cdd:PRK14964 84 hpdVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 156 LSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNILDY 235
Cdd:PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDK 243
|
250 260
....*....|....*....|....*..
gi 496385745 236 DYYLQIADFAKSNDIPGILSKLNEIVN 262
Cdd:PRK14964 244 HILEDLVEAILLGDAQSALNVFRELCN 270
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
9-285 |
2.62e-72 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 240.27 E-value: 2.62e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDD------------TGFA 76
Cdd:PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTpcgecdscvalaPGGP 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 77 FNI--YELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154
Cdd:PRK07764 87 GSLdvTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 155 ILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLttftqrnitLAKAAEtlNILD 234
Cdd:PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQL---------LAGAGP--EGVT 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496385745 235 YDY---YLQIADFA---------KSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQ 285
Cdd:PRK07764 236 YERavaLLGVTDSAlideavdalAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQ 298
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
6-260 |
3.68e-70 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 234.74 E-value: 3.68e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD------------DT 73
Cdd:PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSqpcgvcracreiDE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK07003 165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGAL 244
|
250 260
....*....|....*....|....*..
gi 496385745 234 DYDYYLQIADFAKSNDIPGILSKLNEI 260
Cdd:PRK07003 245 DQTYMVRLLDALAAGDGPEILAVADEM 271
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
6-315 |
4.58e-70 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 232.25 E-value: 4.58e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD------------DT 73
Cdd:PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTStpcevcatckavNE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLI 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 234 D----YDYYLQIadfaKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINLiEVGEKTKAKYVEQSQK 309
Cdd:PRK14960 244 DrtiiYDLILAV----HQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGL-KYSEEINAKILQLSKL 318
|
....*.
gi 496385745 310 WTAQEL 315
Cdd:PRK14960 319 ISAQDL 324
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-349 |
1.56e-69 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 229.18 E-value: 1.56e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 1 MENFIVSARkYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDD-------- 72
Cdd:PRK14959 1 MSHASLTAR-YRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEpcntceqc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 73 ----TGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEK 148
Cdd:PRK14959 80 rkvtQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 149 HKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAE 228
Cdd:PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARG 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 229 TLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMAQNPNTINL--IEVGEKTKAKYVEQ 306
Cdd:PRK14959 240 VLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALasLDLPEDEARQWLGW 319
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 496385745 307 SQKWTAQELIDALEICNQADINYKNSKNQRLTVEIALMQLASL 349
Cdd:PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAML 362
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
3-260 |
3.58e-69 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 221.22 E-value: 3.58e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 3 NFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDD---------- 72
Cdd:PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNpcrkciicke 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 73 --TGFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHK 150
Cdd:PRK14961 82 ieKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 151 IIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETL 230
Cdd:PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDML 241
|
250 260 270
....*....|....*....|....*....|
gi 496385745 231 NILDYDYYLQIADFAKSNDIPGILSKLNEI 260
Cdd:PRK14961 242 GLLNEKQSFLLTDALLKKDSKKTMLLLNKI 271
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-271 |
4.56e-66 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 217.03 E-value: 4.56e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 3 NFIVSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDDTGF------- 75
Cdd:PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIktceqct 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 76 ---AFN------IYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATT 146
Cdd:PRK06645 87 nciSFNnhnhpdIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 147 EKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRN---ITL 223
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSdniISP 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 496385745 224 AKAAETLNILDYDYYLQIADFAKSNDIPGILSKLNEIVNKGFDPHIFI 271
Cdd:PRK06645 247 QVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFI 294
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
8-254 |
5.22e-62 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 207.63 E-value: 5.22e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 8 ARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSG-------------ASDDTG 74
Cdd:PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGvtaepcnkcencvAINNNS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 75 FaFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154
Cdd:PRK14957 87 F-IDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 155 ILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNILD 234
Cdd:PRK14957 166 ILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGIID 245
|
250 260
....*....|....*....|
gi 496385745 235 YDYYLQIADFAKSNDIPGIL 254
Cdd:PRK14957 246 SEEVYSIINAIIDNDPKAIL 265
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
6-216 |
1.09e-61 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 212.66 E-value: 1.09e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSG--ASD----------DT 73
Cdd:PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGvtATPcgvcsscveiAQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTF 216
Cdd:PRK14949 165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAF 227
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
6-266 |
2.39e-58 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 196.87 E-value: 2.39e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 6 VSARKYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASD------------DT 73
Cdd:PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSAnpcndcencreiDE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153
Cdd:PRK14958 85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 154 TILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLNIL 233
Cdd:PRK14958 165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTI 244
|
250 260 270
....*....|....*....|....*....|...
gi 496385745 234 DYDYYLQIADFAKSNDIPGILSKLNEIVNKGFD 266
Cdd:PRK14958 245 EPLLLFDILEALAAKAGDRLLGCVTRLVEQGVD 277
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
22-263 |
3.04e-48 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 164.38 E-value: 3.04e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 22 QSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKI-----------NEKSGASDDTGFAFNIYELDAASNN-- 88
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLlcenpeggkacGQCHSRLMAAGNHPDLLELNPEEKSdq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 89 -SVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKRI 167
Cdd:COG0470 81 iGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRPP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 168 QIEDIQNHLRkiadKEGIqyEDDALFLVAQKADGALRDAL----------SIFDRLTTFTQRN--ITLAKAAETLNILDY 235
Cdd:COG0470 161 SEEEALAWLR----EEGV--DEDALEAILRLAGGDPRAAInllqalagrkELLEDLAALLSRDraLELLDALLKAEALEL 234
|
250 260 270
....*....|....*....|....*....|
gi 496385745 236 DYYLQ--IADFAKSNDIPGILSKLNEIVNK 263
Cdd:COG0470 235 LDWLLkwLLDNLPLEYAGEDLARAYEALSE 264
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
21-167 |
6.28e-39 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 136.19 E-value: 6.28e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 21 GQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKI---NEKSGASDDTGFA-----------FNIYELDAAS 86
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALfceEPGDDLPCGQCRScrriesgnhpdLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 87 NnSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKR 166
Cdd:pfam13177 81 I-KIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
.
gi 496385745 167 I 167
Cdd:pfam13177 160 L 160
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
8-247 |
2.89e-38 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 141.38 E-value: 2.89e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 8 ARKYRPLEFDTVVGQSHITDT---LEHAIDNNQLAQALLFcGPRGVGKTTCARILARKineksgasddTGFAFniYELDA 84
Cdd:PRK13342 3 AERMRPKTLDEVVGQEHLLGPgkpLRRMIEAGRLSSMILW-GPPGTGKTTLARIIAGA----------TDAPF--EALSA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 85 AsNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEppAHAIFILATTE--KHKIIPTILSRCQIY 162
Cdd:PRK13342 70 V-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTEnpSFEVNPALLSRAQVF 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 163 DFKRIQIEDIQNHLRK-IADKEG--IQYEDDALFLVAQKADGALRDALSIFDrLTTFTQRNITLAKAAETL--NILDYD- 236
Cdd:PRK13342 147 ELKPLSEEDIEQLLKRaLEDKERglVELDDEALDALARLANGDARRALNLLE-LAALGVDSITLELLEEALqkRAARYDk 225
|
250
....*....|....*
gi 496385745 237 ----YYLQIADFAKS 247
Cdd:PRK13342 226 dgdeHYDLISALHKS 240
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
29-206 |
2.31e-36 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 130.44 E-value: 2.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 29 LEHAIDNNQLAQALLFCGPRGVGKTTCARILARKIN-EKSGASDDTGFAFNIYELDAAS----------NNS--VDDIRE 95
Cdd:TIGR00678 4 LKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLcEQRGGGEPCGECHSCRLIEAGNhpdlhrlepeGQSikVDQVRE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 96 LIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKRIQIEDIQNH 175
Cdd:TIGR00678 84 LVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALLQW 163
|
170 180 190
....*....|....*....|....*....|.
gi 496385745 176 LRkiadKEGIQYEDDAlfLVAQKADGALRDA 206
Cdd:TIGR00678 164 LI----RQGISEEAAE--LLLALAGGSPGRA 188
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
10-209 |
3.50e-31 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 119.98 E-value: 3.50e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEHAIDNNQLAQaLLFCGPRGVGKTTCARILARKIneksgASDDtgFAFNIYELDAASNNS 89
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALAREL-----YGED--WRENFLELNASDERG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 90 VDDIRELI-DQVRFAPqVGK--YKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKR 166
Cdd:PRK00440 82 IDVIRNKIkEFARTAP-VGGapFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 496385745 167 IQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSI 209
Cdd:PRK00440 161 LKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINA 203
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
10-266 |
3.67e-31 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 120.48 E-value: 3.67e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEHAIDNNQLAQaLLFCGPRGVGKTTCARILARKINEKSGASDDTGFA----FN------- 78
Cdd:PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNvadfFDqgkkylv 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 79 -------IYELDAASNNSV-DDIRELI-DQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKH 149
Cdd:PRK12402 87 edprfahFLGTDKRIRSSKiDNFKHVLkEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 150 KIIPTILSRC-QIYdFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALsIFDRLTTFTQRNITLAKAAE 228
Cdd:PRK12402 167 KLIPPIRSRClPLF-FRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTLQTAALAAGEITMEAAYE 244
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 496385745 229 TLNILDYD-YYLQIADFAKSNDIPGILSKLNE-IVNKGFD 266
Cdd:PRK12402 245 ALGDVGTDeVIESLLDAAEAGDFTDARKTLDDlLIDEGLS 284
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
12-247 |
6.90e-31 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 121.70 E-value: 6.90e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 12 RPLEFDTVVGQSHITD---TLEHAIDNNQLAqALLFCGPRGVGKTTCARILARKineksgasddTGFAFniYELDAASNN 88
Cdd:COG2256 20 RPRTLDEVVGQEHLLGpgkPLRRAIEAGRLS-SMILWGPPGTGKTTLARLIANA----------TDAEF--VALSAVTSG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 89 sVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEppAHAIFILATTEK--HKIIPTILSRCQIYDFKR 166
Cdd:COG2256 87 -VKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVED--GTITLIGATTENpsFEVNSALLSRCRVFVLKP 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 167 IQIEDIQNHLRK-IADKE------GIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRN----ITLAKAAETL--NIL 233
Cdd:COG2256 164 LSEEDLEQLLERaLADDErglggyKLELDDEALEALARLADGDARRALNALELAVLSAPPDgvieITLELVEEALqrRAL 243
|
250
....*....|....*....
gi 496385745 234 DYD-----YYLQIADFAKS 247
Cdd:COG2256 244 RYDkdgdeHYDLISAFIKS 262
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
16-260 |
2.65e-27 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 109.60 E-value: 2.65e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 16 FDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDDT---------------------- 73
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIrrrleegnhpdllwveptyqhq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 74 GFAFNIYELDAA--SNNSVDDIRelIDQVR----F---APQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPpAHAIFILA 144
Cdd:PRK07399 83 GKLITASEAEEAglKRKAPPQIR--LEQIReikrFlsrPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP-GNGTLILI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 145 TTEKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDAL--------SIFDRLTTF 216
Cdd:PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANIeqlqsippELLQKLEQP 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 496385745 217 TQRNI---TLAKA-AETLNI------LDydyYLQIADFAKSNDIPgILSKLNEI 260
Cdd:PRK07399 240 PKSPLealELAKDiSEELDIeqqlwlID---YLQQHYWQKTKNRQ-LLKQLEKL 289
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
14-178 |
3.69e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 103.57 E-value: 3.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 14 LEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGasdDTGFAfNIYELDAASNNS--VD 91
Cdd:PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ---QREYV-DIIEFKPINKKSigVD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 92 DIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKRIQIED 171
Cdd:PRK05564 77 DIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEE 156
|
....*..
gi 496385745 172 IQNHLRK 178
Cdd:PRK05564 157 IEKFISY 163
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
10-207 |
2.38e-24 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 101.34 E-value: 2.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEhAIDNNQLAQALLFCGPRGVGKTTCARILARkinEKSGASddtgFAFNIYELDAASNNS 89
Cdd:PLN03025 6 KYRPTKLDDIVGNEDAVSRLQ-VIARDGNMPNLILSGPPGTGKTTSILALAH---ELLGPN----YKEAVLELNASDDRG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 90 VDDIRELID---QVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKR 166
Cdd:PLN03025 78 IDVVRNKIKmfaQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 496385745 167 IQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDAL 207
Cdd:PLN03025 158 LSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQAL 198
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
167-231 |
1.42e-20 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 84.09 E-value: 1.42e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496385745 167 IQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFTQRNITLAKAAETLN 231
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
13-321 |
1.75e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 85.47 E-value: 1.75e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 13 PLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKI------NEKSGASDDTGFAFNIYELDA-- 84
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIlshpdpAEAPETLADPDPASPVWRQIAqg 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 85 ASNN-------------------SVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILAT 145
Cdd:PRK09112 99 AHPNllhitrpfdektgkfktaiTVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 146 TEKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLvaQKADGALRDALsifdRLTTFTQRNItlAK 225
Cdd:PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALL--QRSKGSVRKAL----LLLNYGGLEI--IA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 226 AAETLnildydyylqiadFAKSNDIPGILSKLNEIVNkGFDPHIFIGGLGSHFRDLMMAqnpNTINLIEVGEKTKAKyvE 305
Cdd:PRK09112 251 TIDQL-------------LAGSGPDARKAHKLADALS-GRESEVQFDFFRDHLLDRIMA---EARRAAEAGDLALAE--R 311
|
330
....*....|....*.
gi 496385745 306 QSQKWtaQELIDALEI 321
Cdd:PRK09112 312 LARLW--SEIIEEIVE 325
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
10-266 |
3.20e-18 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 85.74 E-value: 3.20e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEHAID---NNQLAQALLFCGPRGVGKTTCARILARKINeksgasddtgfaFNIYELDAAS 86
Cdd:PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIEswlKGKPKKALLLYGPPGVGKTSLAHALANDYG------------WEVIELNASD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 87 NNSVDDIRELIDQvrfAPQVG-----KYKVYIIDEVHMLS----TAAFNAFLKTLEEPpahaifilatteKHKII----- 152
Cdd:PRK04195 75 QRTADVIERVAGE---AATSGslfgaRRKLILLDEVDGIHgnedRGGARAILELIKKA------------KQPIIltand 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 153 ------PTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDA-------------------- 206
Cdd:PRK04195 140 pydpslRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAindlqaiaegygkltledvk 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 207 --------LSIFDRLT-TFTQRNITLAKAAETLNILDYDYYLQ-IADfaksnDIPGILSKLNEIVnKGFD 266
Cdd:PRK04195 220 tlgrrdreESIFDALDaVFKARNADQALEASYDVDEDPDDLIEwIDE-----NIPKEYDDPEDIA-RAYD 283
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
37-160 |
9.35e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 82.83 E-value: 9.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 37 QLAQALLFCGPRGVGKTTCA-RILARKINEKSGASDDTGFA--------------FNIYELDAASNNSVDDIRELIDQVR 101
Cdd:PRK05707 20 RHPHAYLLHGPAGIGKRALAeRLAAALLCEAPQGGGACGSCkgcqllragshpdnFVLEPEEADKTIKVDQVRELVSFVV 99
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 496385745 102 FAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
Cdd:PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQ 158
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
22-185 |
9.98e-18 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 83.05 E-value: 9.98e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 22 QSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKI--NEKSGASDDtGFAFNIYELDaaSNNSvDDIREL--- 96
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLfcLERNGVEPC-GTCTNCKRID--SGNH-PDVHLVapd 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 97 -----IDQVRFAPQV-------GKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDF 164
Cdd:PRK08058 87 gqsikKDQIRYLKEEfsksgveSNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEF 166
|
170 180
....*....|....*....|.
gi 496385745 165 KRIQIEDIQNHLrkiaDKEGI 185
Cdd:PRK08058 167 RPLPPESLIQRL----QEEGI 183
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
16-161 |
6.98e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 81.11 E-value: 6.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 16 FDTVVGQSHITDTLEHA---------IDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDDTGFAFNIYELDAAS 86
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAaraaradvaAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 87 NN------------SVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154
Cdd:PRK07940 84 HPdvrvvapeglsiGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163
|
....*..
gi 496385745 155 ILSRCQI 161
Cdd:PRK07940 164 IRSRCRH 170
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
10-192 |
9.02e-17 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 80.03 E-value: 9.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKsgasddtgfafniYELDAASNNS 89
Cdd:PHA02544 14 KYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE-------------VLFVNGSDCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 90 VDDIRELIDqvRFAPQV---GKYKVYIIDEVHMLSTAAFNAFLKTL-EEPPAHAIFILATTEKHKIIPTILSRCQIYDFk 165
Cdd:PHA02544 81 IDFVRNRLT--RFASTVsltGGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF- 157
|
170 180 190
....*....|....*....|....*....|....*
gi 496385745 166 RIQIEDIQNHLRK--------IADKEGIQYEDDAL 192
Cdd:PHA02544 158 GVPTKEEQIEMMKqmivrckgILEAEGVEVDMKVL 192
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
77-330 |
3.55e-16 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 77.99 E-value: 3.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 77 FNIYELDAASnnsvDDIRELIDQVRFAPQVGKYKVYIIDEVHMLS--TAAFNAFLKTLEEPPAHAIFILAT---TEKHKI 151
Cdd:COG1466 35 FNRTRLDGAE----TDWAELLDEAQTLSLFGERRLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAgklDKRKKL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 152 IPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRLTTFT--QRNITLAKAAET 229
Cdd:COG1466 111 FKALEKAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGDLLALAQELEKLALYAgdGGTITLEDVEAL 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 230 LNI-LDYDYYlQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLMMA-------QNPNTI-NLIEVGEKTK 300
Cdd:COG1466 191 VGDsAEFNVF-DLADALLAGDAARALRILRRLLAEGEEPVLILAALARQFRLLLQVkallaqgKSLAEIaKELGVPPFRV 269
|
250 260 270
....*....|....*....|....*....|
gi 496385745 301 AKYVEQSQKWTAQELIDALEICNQADINYK 330
Cdd:COG1466 270 KLALRALRRWSLERLARALQLLAEADLALK 299
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
31-224 |
4.79e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 77.99 E-value: 4.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 31 HAIDNNQLAQ-------ALLFCGPRGVGKTTCARILARKINEKSGASD-------------DTGFAFNIYELDAASNN-- 88
Cdd:PRK08699 6 HQEQWRQIAEhwerrpnAWLFAGKKGIGKTAFARFAAQALLCETPAPGhkpcgecmschlfGQGSHPDFYEITPLSDEpe 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 89 --------SVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
Cdd:PRK08699 86 ngrkllqiKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCR 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496385745 161 IYDFKRIQIEDIQNHLRK--IADKEG----------IQYEDDALFLVAQKADG-ALRDALSIFDRLTTFTQRNITLA 224
Cdd:PRK08699 166 KMVLPAPSHEEALAYLRErgVAEPEErlafhsgaplFDEEPELRALRIKLLDIlAEPRLLKILDYAALFDKEKLPLA 242
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
38-214 |
7.28e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 77.76 E-value: 7.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 38 LAQALLFCGPRGVGKTTCARILARKI-------NEKSGASDDT---------------GFAFNIYELDAASNN------- 88
Cdd:PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLlatpppgGDGAVPPPTSlaidpdhpvarriaaGAHGGLLTLERSWNEkgkrlrt 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 89 --SVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKR 166
Cdd:PRK07471 120 viTVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRP 199
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 496385745 167 IQIEDIQnhlrKIADKEGIQYEDDALFLVAQKADG----ALR----DALSIFDRLT 214
Cdd:PRK07471 200 LAPEDVI----DALAAAGPDLPDDPRAALAALAEGsvgrALRlaggDGLALYRRLT 251
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
20-161 |
1.04e-15 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 73.72 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 20 VGQSHITDTLEHAIDNNQLAqALLFCGPRGVGKTTCARILARKINEKSgasddtgfaFNIYELDAASNNSVDDIRELI-- 97
Cdd:cd00009 1 VGQEEAIEALREALELPPPK-NLLLYGPPGTGKTTLARAIANELFRPG---------APFLYLNASDLLEGLVVAELFgh 70
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496385745 98 ---DQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEE------PPAHAIFILATT--EKHKIIPTILSRCQI 161
Cdd:cd00009 71 flvRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDRALYDRLDI 145
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
8-247 |
2.80e-15 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 77.02 E-value: 2.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 8 ARKYRPLEFDTVVGQSHITDT---LEHAIDNNQLAqALLFCGPRGVGKTTCARILARKINeksgasddtgfAFNIYeLDA 84
Cdd:PRK13341 19 ADRLRPRTLEEFVGQDHILGEgrlLRRAIKADRVG-SLILYGPPGVGKTTLARIIANHTR-----------AHFSS-LNA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 85 ASnNSVDDIRELIDQVRFA-PQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEppAHAIFILATTEK--HKIIPTILSRCQI 161
Cdd:PRK13341 86 VL-AGVKDLRAEVDRAKERlERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENpyFEVNKALVSRSRL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 162 YDFKRIQIEDIQNHL-RKIADKEG------IQYEDDALFLVAQKADGalrDALSIFDRL-----TTFTQRN----ITLAK 225
Cdd:PRK13341 163 FRLKSLSDEDLHQLLkRALQDKERgygdrkVDLEPEAEKHLVDVANG---DARSLLNALelaveSTPPDEDglidITLAI 239
|
250 260
....*....|....*....|....*....
gi 496385745 226 AAETL--NILDYD-----YYLQIADFAKS 247
Cdd:PRK13341 240 AEESIqqRAVLYDkegdaHFDTISAFIKS 268
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
22-165 |
3.13e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 75.38 E-value: 3.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 22 QSHITDTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKInekSGASDDTGFAFNIYELDAAS------------NNS 89
Cdd:PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV---LASGPDPAAAQRTRQLIAAGthpdlqlvsfipNRT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 90 VDDIRE--LIDQVR-------FAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
Cdd:PRK08769 86 GDKLRTeiVIEQVReisqklaLTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165
|
....*
gi 496385745 161 IYDFK 165
Cdd:PRK08769 166 RLEFK 170
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
89-187 |
3.73e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 74.83 E-value: 3.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 89 SVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYdfkRIQ 168
Cdd:PRK05917 76 SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSI---HIP 152
|
90
....*....|....*....
gi 496385745 169 IEDiqnhlRKIADKEGIQY 187
Cdd:PRK05917 153 MEE-----KTLVSKEDIAY 166
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
59-176 |
4.25e-15 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 74.76 E-value: 4.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 59 LARKINEKSGASDDTGFAFNIYELDAASNN-SVDDIRELIDQVRFAPQV-GKYKVYIIDEVHMLSTAAFNAFLKTLEEPP 136
Cdd:PRK07132 39 LNKFNNLQITNLNEQELPANIILFDIFDKDlSKSEFLSAINKLYFSSFVqSQKKILIIKNIEKTSNSLLNALLKTIEEPP 118
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 496385745 137 AHAIFILATTEKHKIIPTILSRCQIYDFKRIQIEDIQNHL 176
Cdd:PRK07132 119 KDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL 158
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
47-250 |
4.48e-15 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 76.80 E-value: 4.48e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 47 PRGVGKTTCARILARKINEKSgasddtgFAFNIYELDAASNNSVDDIRELIDQVRFAPQVG--KYKVYIIDEVHMLSTAA 124
Cdd:PRK04132 574 PTVLHNTTAALALARELFGEN-------WRHNFLELNASDERGINVIREKVKEFARTKPIGgaSFKIIFLDEADALTQDA 646
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 125 FNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALR 204
Cdd:PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 726
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 496385745 205 DALsifdrlttftqrNITLAKAAETLNILDYDYYLqIADFAKSNDI 250
Cdd:PRK04132 727 RAI------------NILQAAAALDDKITDENVFL-VASRARPEDI 759
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
27-160 |
1.39e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 73.68 E-value: 1.39e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 27 DTLEHAIDNNQLAQALLFCGPRGVGKTTCARILARKINEKSGASDDTGFAFNIyELDAASNN---------------SVD 91
Cdd:PRK06090 13 QNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSC-ELMQSGNHpdlhvikpekegksiTVE 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 496385745 92 DIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
Cdd:PRK06090 92 QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQ 160
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
37-213 |
1.08e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 71.33 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 37 QLAQALLFCGPRGVGKTTCARILARKI--------------------------------------NEKSGASDDTGFAfn 78
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLlcetpqpdgepcgtcaacnwfaqgnhpdyrivrpealaAEAPGAADEAKEA-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 79 iyELDAASNNS--------VDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHK 150
Cdd:PRK06964 97 --DADEGGKKTkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDR 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 151 IIPTILSRCQIYDFKRIQIEDIQNHLRK--IADKEGI---------------QYEDDAL--FLVAQKADGALRDALSIFD 211
Cdd:PRK06964 175 LLPTILSRCRQFPMTVPAPEAAAAWLAAqgVADADALlaeaggaplaalalaSDENRPLrdWTLGQLAAGAACDAFACAE 254
|
..
gi 496385745 212 RL 213
Cdd:PRK06964 255 TL 256
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
90-162 |
1.64e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 70.53 E-value: 1.64e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 496385745 90 VDDIRELIDQV-RFAPQVGKYKVYIiDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIY 162
Cdd:PRK06871 89 VDQVREINEKVsQHAQQGGNKVVYI-QGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTW 161
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
42-161 |
6.37e-12 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 62.23 E-value: 6.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 42 LLFCGPRGVGKTTCARILARKINeksgasddtgfaFNIYELDAAS------NNSVDDIRELIDQVRF-APqvgkyKVYII 114
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG------------APFIEISGSElvskyvGESEKRLRELFEAAKKlAP-----CVIFI 63
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 496385745 115 DEVHMLSTA-----------AFNAFLKTLEEPPAHA---IFILATTEKHKIIPTILSRCQI 161
Cdd:pfam00004 64 DEIDALAGSrgsggdsesrrVVNQLLTELDGFTSSNskvIVIAATNRPDKLDPALLGRFDR 124
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
90-162 |
1.79e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 64.32 E-value: 1.79e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496385745 90 VDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIY 162
Cdd:PRK07993 90 VDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLH 162
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
59-347 |
3.22e-09 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 57.27 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 59 LARKINEKSGASDDTGFAFNIYELDAAsnnsvdDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAA-FNAFLKTLEEPPA 137
Cdd:TIGR01128 3 AADAIRAAALAQGFDEFNVFRIDGEEF------DWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKgLKALEEYLANPPP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 138 HAIFILAT---TEKHKIIPT--ILSRCQIYDFKRIQIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDR 212
Cdd:TIGR01128 77 DTLLLIEApklDKRKKLTKWlkALKNAEIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 213 LTTFTQ-RNITLAKAAETLNI-LDYDYYlQIADFAKSNDIPGILSKLNEIVNKGFDPHIFIGGLGSHFRDLM----MAQN 286
Cdd:TIGR01128 157 LALYAPdGKITLEDVEEAVSDsARFNVF-DLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLqlkrLAQQ 235
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 496385745 287 PNTINLI----EVGEKTKAKYVEQSQKWTAQELIDALEICNQADINYKNSKNQ--RLTVEIALMQLA 347
Cdd:TIGR01128 236 GGPLAQLasklGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGdpWLALERLLLKLA 302
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
16-224 |
4.01e-09 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 56.43 E-value: 4.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 16 FDTVVGQSHITDTLEHAIDNNQLAQAL-----------LFCGPRGVGKTTCARILARKineksgasddTGFAFNIYELDA 84
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKELRRRENLrkfglwpprkiLFYGPPGTGKTMLAEALAGE----------LKLPLLTVRLDS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 85 ASNNSVDD----IRELIDQVRFAPQvgkykVYIIDEVHMLST------------AAFNAFLKTLEEPPAHAIFILATTEK 148
Cdd:COG1223 71 LIGSYLGEtarnLRKLFDFARRAPC-----VIFFDEFDAIAKdrgdqndvgevkRVVNALLQELDGLPSGSVVIAATNHP 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 149 HKIIPTILSRCQIydfkRIQI-----EDIQNHLRKIADKEGIQYEDDaLFLVAQKADG--------ALRDAL--SIFDRL 213
Cdd:COG1223 146 ELLDSALWRRFDE----VIEFplpdkEERKEILELNLKKFPLPFELD-LKKLAKKLEGlsgadiekVLKTALkkAILEDR 220
|
250
....*....|.
gi 496385745 214 TTFTQRNITLA 224
Cdd:COG1223 221 EKVTKEDLEEA 231
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
90-165 |
2.37e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 53.50 E-value: 2.37e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496385745 90 VDDIRELIDQVRFAPqvgKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFK 165
Cdd:PRK08485 39 IEDAKEVIAEAYIAE---SEEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
40-162 |
3.33e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.99 E-value: 3.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 40 QALLFCGPRGVGKTTCARILARKINEKSG-----------ASDDTGFAFNIYELDAASNNSVDDIRELIDQVRfapqVGK 108
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGgviyidgedilEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KLK 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496385745 109 YKVYIIDEVHMLSTAAFNA--------FLKTLEEPPAHAIFILATTEKHKIIPTIL---SRCQIY 162
Cdd:smart00382 79 PDVLILDEITSLLDAEQEAllllleelRLLLLLKSEKNLTVILTTNDEKDLGPALLrrrFDRRIV 143
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
91-166 |
4.56e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 53.87 E-value: 4.56e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496385745 91 DDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFKR 166
Cdd:PRK07276 87 DTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK 162
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
36-144 |
1.05e-07 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 50.03 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 36 NQLAQALLFCGPRGVGKTTCARILARKINEK---------SGASDDTGFAFNIYELDAASNNSVDDIRELIDQV-RFAPQ 105
Cdd:pfam13401 2 RFGAGILVLTGESGTGKTTLLRRLLEQLPEVrdsvvfvdlPSGTSPKDLLRALLRALGLPLSGRLSKEELLAALqQLLLA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 496385745 106 VGKYKVYIIDEVHMLSTAAFNaFLKTLEEPPAHAI-FILA 144
Cdd:pfam13401 82 LAVAVVLIIDEAQHLSLEALE-ELRDLLNLSSKLLqLILV 120
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
7-201 |
1.71e-07 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 52.61 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 7 SARKYRPLEFDTVVGQSHITDTLEHAID----NNQLAQA--------LLFCGPRGVGKTTCARILARKINeksgasddtg 74
Cdd:COG0464 147 ELLELREAILDDLGGLEEVKEELRELVAlplkRPELREEyglppprgLLLYGPPGTGKTLLARALAGELG---------- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 75 faFNIYELDAAS-----------NnsvddIRELIDQVRFAPQVgkykVYIIDEVHML-----------STAAFNAFLKTL 132
Cdd:COG0464 217 --LPLIEVDLSDlvskyvgetekN-----LREVFDKARGLAPC----VLFIDEADALagkrgevgdgvGRRVVNTLLTEM 285
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496385745 133 EEPPAHAIFILATTEKHKIIPTILSRCQI------YDFK-RIQIedIQNHLRKIADKEGIQYEDdalflVAQKADG 201
Cdd:COG0464 286 EELRSDVVVIAATNRPDLLDPALLRRFDEiiffplPDAEeRLEI--FRIHLRKRPLDEDVDLEE-----LAEATEG 354
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
16-234 |
2.73e-07 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 51.35 E-value: 2.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 16 FDT-VVGQShitdtlehaidnNQLAQA---------------LLFCGPRGVGKT-----TCARILARKINEK----SGAS 70
Cdd:COG0593 7 FDNfVVGPS------------NRLAHAaalavaewpgkaynpLFLYGGVGLGKThllhaIGNEALENNPGARvvylTAEE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 71 DDTGFAfniyelDAASNNSVDDIRELIDQVRfapqvgkykVYIIDEVHMLSTAA---------FNAFLktleeppAHAIF 141
Cdd:COG0593 75 FTNDFI------NAIRNNTIEEFKEKYRSVD---------VLLIDDIQFLAGKEatqeeffhtFNALR-------EAGKQ 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 142 ILATTEKH-KIIPTILSR-------CQIYDFK------RIQIediqnhLRKIADKEGIQYEDDALFLVAQKADGALRDAL 207
Cdd:COG0593 133 IVLTSDRPpKELPGLEERlrsrlewGLVVDIQppdletRIAI------LRKKAADRGLELPDEVLEYLARRIERNVRELE 206
|
250 260 270
....*....|....*....|....*....|
gi 496385745 208 SIFDRLT---TFTQRNITLAKAAETLNILD 234
Cdd:COG0593 207 GALNRLDayaLLTGRPITLELAREVLKDLL 236
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
85-159 |
2.79e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 51.38 E-value: 2.79e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496385745 85 ASNNSVDDIRELIDQVRFAPQVGKYKVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC 140
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
12-236 |
1.12e-06 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 49.74 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 12 RPLEFDTVVGQSHITDTLEHAIDNNQL-AQAL---LFCGPRGVGKTTCARILARKINEK----SG-----ASDDTGFAFN 78
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKrGEALdhvLLYGPPGLGKTTLANIIANEMGVNiritSGpalekPGDLAAILTN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 79 IYELDaasnnsvddirelidqVRFapqvgkykvyiIDEVHMLStaafnaflKTLEE------------------PPAHAI 140
Cdd:PRK00080 100 LEEGD----------------VLF-----------IDEIHRLS--------PVVEEilypamedfrldimigkgPAARSI 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 141 ------FIL--ATTEKHKII-P-----TILSRCQIYDfkriqIEDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDA 206
Cdd:PRK00080 145 rldlppFTLigATTRAGLLTsPlrdrfGIVQRLEFYT-----VEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219
|
250 260 270
....*....|....*....|....*....|....
gi 496385745 207 LSIFDRLTTFTQRN----ITLAKAAETLNILDYD 236
Cdd:PRK00080 220 NRLLRRVRDFAQVKgdgvITKEIADKALDMLGVD 253
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
110-162 |
1.14e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 49.45 E-value: 1.14e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 496385745 110 KVYIIDEVHMLSTAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIY 162
Cdd:PRK05818 90 KIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQY 142
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
42-158 |
1.67e-06 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 47.28 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 42 LLFCGPRGVGKTTCARILARKINEKSGASDDTGFAfniyelDAASNNSVDDIRELIDQVRFAPQVgkykVYIIDEVHMLS 121
Cdd:cd19481 29 ILLYGPPGTGKTLLAKALAGELGLPLIVVKLSSLL------SKYVGESEKNLRKIFERARRLAPC----ILFIDEIDAIG 98
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 496385745 122 ------------TAAFNAFLKTLEEPPA--HAIFILATTEKHKIIPTILSR 158
Cdd:cd19481 99 rkrdssgesgelRRVLNQLLTELDGVNSrsKVLVIAATNRPDLLDPALLRP 149
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
10-52 |
7.33e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 44.83 E-value: 7.33e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 496385745 10 KYRPLEFDTVVGQSHITDTLEHAIDNNQLAQaLLFCGPRGVGK 52
Cdd:PRK04132 12 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGK 53
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
170-207 |
1.88e-04 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 39.05 E-value: 1.88e-04
10 20 30
....*....|....*....|....*....|....*...
gi 496385745 170 EDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDAL 207
Cdd:cd18140 4 EQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAI 41
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
42-134 |
1.90e-04 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 41.12 E-value: 1.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 42 LLFCGPRGVGKTTCARILARKINEKSgasddtgfaFNIYELDAASNnsvddIRELIDQVRFAPQVGKY------------ 109
Cdd:pfam07728 2 VLLVGPPGTGKTELAERLAAALSNRP---------VFYVQLTRDTT-----EEDLFGRRNIDPGGASWvdgplvraareg 67
|
90 100
....*....|....*....|....*
gi 496385745 110 KVYIIDEVHMLSTAAFNAFLKTLEE 134
Cdd:pfam07728 68 EIAVLDEINRANPDVLNSLLSLLDE 92
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
24-120 |
2.70e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 42.62 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 24 HITDTLEHAIDNNQlaqALLFCGPRGVGKTTCARILARKINEKsgasddtgfafnIY---ELDAASNNSVDDIRELIDqv 100
Cdd:COG1373 8 KILDKLLKLLDNRK---AVVITGPRQVGKTTLLKQLAKELENI------------LYinlDDPRLRALAEEDPDDLLE-- 70
|
90 100
....*....|....*....|
gi 496385745 101 RFAPQVGKYKVYIIDEVHML 120
Cdd:COG1373 71 ALKELYPGKTYLFLDEIQRV 90
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
9-143 |
4.15e-04 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 42.14 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 9 RKYRPLEFDTVVGQ--------SHITDTLEHAIDNNQLAQALLFcGPRGVGKTTCARILARKINEksgASDDTGFAFNIY 80
Cdd:COG1474 14 RDREVLSPDYVPDRlphreeeiEELASALRPALRGERPSNVLIY-GPTGTGKTAVAKYVLEELEE---EAEERGVDVRVV 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 496385745 81 ELDAASNNSVDDI-RELIDQVRFAPQV---GkykvyiidevhmLSTAA-FNAFLKTLEEPPAHAIFIL 143
Cdd:COG1474 90 YVNCRQASTRYRVlSRILEELGSGEDIpstG------------LSTDElFDRLYEALDERDGVLVVVL 145
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
42-97 |
1.06e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 37.97 E-value: 1.06e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 496385745 42 LLFCGPRGVGKTTCARILARKINEKSGASDDTGFAFN---------------IYElDAASNNSVDDIRELI 97
Cdd:pfam00910 1 IWLYGPPGCGKSTLAKYLARALLKKLGLPKDSVYSRNpdddfwdgytgqpvvIID-DFGQNPDGPDEAELI 70
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
10-64 |
3.11e-03 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 37.93 E-value: 3.11e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 496385745 10 KYRPLE---FDTVVGQSHITDTLEHAIdnnQLAQA-----------LLFCGPRGVGKTTCARILARKIN 64
Cdd:cd19499 1 KLLNLEerlHERVVGQDEAVKAVSDAI---RRARAglsdpnrpigsFLFLGPTGVGKTELAKALAELLF 66
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|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
170-213 |
4.08e-03 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 35.52 E-value: 4.08e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 496385745 170 EDIQNHLRKIADKEGIQYEDDALFLVAQKADGALRDALSIFDRL 213
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRA 47
|
|
| AAA_7 |
pfam12775 |
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 ... |
17-119 |
7.52e-03 |
|
P-loop containing dynein motor region; This domain is found in human cytoplasmic dynein-2 proteins. Cytoplasmic dynein-2 (dynein-2) performs intraflagellar transport and is associated with human skeletal ciliopathies. Dyneins share a conserved motor domain that couples cycles of ATP hydrolysis with conformational changes to produce movement. Structural analysis reveal that the motor's ring consists of six AAA+ domains (ATPases associated with various cellular activities (AAA1-AAA6). This is the third nucleotide binding sites in the dynein motor. However, AAA3 has lost the catalytic residues necessary for ATP hydrolysis (the Walker B glutamate, the arginine finger, sensor-I and sensor-II motifs).
Pssm-ID: 463698 [Multi-domain] Cd Length: 179 Bit Score: 36.99 E-value: 7.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496385745 17 DTVVgQSHITDTLehaIDNNQlaqALLFCGPRGVGKTTCarilarkINEKSGASDDTGFAFNIYELDAASnnSVDDIREL 96
Cdd:pfam12775 16 DTVR-YTYLLDLL---LKNGK---PVLLVGPTGTGKTVI-------IQNLLRKLDKEKYLPLFINFSAQT--TSNQTQDI 79
|
90 100 110
....*....|....*....|....*....|
gi 496385745 97 IDQ-------VRFAPQVGKYKVYIIDEVHM 119
Cdd:pfam12775 80 IESklekrrkGVYGPPGGKKLVVFIDDLNM 109
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