M10 family metallopeptidase C-terminal domain-containing protein [Neisseria wadsworthii]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | |||
| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
404-483 | 1.30e-25 | |||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. : Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 101.15 E-value: 1.30e-25
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| PspC_subgroup_2 super family | cl41463 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 1.91e-18 | |||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The actual alignment was detected with superfamily member NF033839: Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 89.83 E-value: 1.91e-18
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| Peptidase_M10_C super family | cl23859 | Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
803-884 | 1.61e-13 | |||
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353. The actual alignment was detected with superfamily member pfam08548: Pssm-ID: 451582 [Multi-domain] Cd Length: 222 Bit Score: 70.86 E-value: 1.61e-13
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| Big_11 super family | cl39560 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
595-661 | 9.38e-08 | |||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. The actual alignment was detected with superfamily member pfam18200: Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 50.30 E-value: 9.38e-08
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| Big_11 super family | cl39560 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
71-143 | 1.94e-03 | |||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. The actual alignment was detected with superfamily member pfam18200: Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 37.97 E-value: 1.94e-03
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| Name | Accession | Description | Interval | E-value | ||||
| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
404-483 | 1.30e-25 | ||||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 101.15 E-value: 1.30e-25
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 1.91e-18 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 89.83 E-value: 1.91e-18
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 5.67e-18 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 88.67 E-value: 5.67e-18
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-573 | 8.25e-18 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 87.90 E-value: 8.25e-18
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 1.28e-17 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 87.52 E-value: 1.28e-17
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-573 | 5.84e-17 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 85.21 E-value: 5.84e-17
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-566 | 1.04e-16 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 84.44 E-value: 1.04e-16
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-605 | 3.01e-16 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 82.89 E-value: 3.01e-16
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
481-561 | 3.55e-16 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 82.89 E-value: 3.55e-16
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-573 | 4.41e-16 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 82.51 E-value: 4.41e-16
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
460-573 | 3.47e-15 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 79.81 E-value: 3.47e-15
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
484-566 | 3.71e-14 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 76.35 E-value: 3.71e-14
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| Peptidase_M10_C | pfam08548 | Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
803-884 | 1.61e-13 | ||||
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353. Pssm-ID: 430067 [Multi-domain] Cd Length: 222 Bit Score: 70.86 E-value: 1.61e-13
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| PRK10819 | PRK10819 | transport protein TonB; Provisional |
486-565 | 5.81e-13 | ||||
transport protein TonB; Provisional Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 69.71 E-value: 5.81e-13
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| Cornifin | pfam02389 | Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
485-558 | 2.06e-11 | ||||
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high. Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 62.38 E-value: 2.06e-11
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| Amelogenin | smart00818 | Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem ... |
484-558 | 5.15e-09 | ||||
Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Pssm-ID: 197891 [Multi-domain] Cd Length: 165 Bit Score: 56.34 E-value: 5.15e-09
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| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
483-558 | 8.08e-09 | ||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 59.26 E-value: 8.08e-09
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| COG5373 | COG5373 | Uncharacterized membrane protein [Function unknown]; |
474-555 | 1.74e-08 | ||||
Uncharacterized membrane protein [Function unknown]; Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 58.47 E-value: 1.74e-08
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| PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
401-566 | 8.06e-08 | ||||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 55.76 E-value: 8.06e-08
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| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
595-661 | 9.38e-08 | ||||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 50.30 E-value: 9.38e-08
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| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
486-559 | 1.28e-07 | ||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 55.40 E-value: 1.28e-07
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| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
487-559 | 1.45e-07 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 55.01 E-value: 1.45e-07
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| PDHac_trf_long | TIGR01348 | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ... |
410-606 | 3.90e-07 | ||||
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase] Pssm-ID: 273566 [Multi-domain] Cd Length: 546 Bit Score: 53.73 E-value: 3.90e-07
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| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
482-558 | 7.24e-07 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 52.70 E-value: 7.24e-07
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| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
482-554 | 9.89e-07 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 52.31 E-value: 9.89e-07
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
460-531 | 1.51e-06 | ||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 52.08 E-value: 1.51e-06
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| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
482-560 | 1.78e-06 | ||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 50.92 E-value: 1.78e-06
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| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
501-557 | 2.03e-06 | ||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 51.55 E-value: 2.03e-06
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| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
491-564 | 4.05e-06 | ||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 50.78 E-value: 4.05e-06
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| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
480-565 | 8.01e-06 | ||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 49.00 E-value: 8.01e-06
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| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
479-573 | 4.06e-05 | ||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 46.68 E-value: 4.06e-05
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| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
481-544 | 5.06e-05 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 46.92 E-value: 5.06e-05
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
483-567 | 2.62e-04 | ||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 44.07 E-value: 2.62e-04
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| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
441-544 | 3.82e-04 | ||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.60 E-value: 3.82e-04
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| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
422-563 | 7.29e-04 | ||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.83 E-value: 7.29e-04
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| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
479-566 | 1.20e-03 | ||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 1.20e-03
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| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
71-143 | 1.94e-03 | ||||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 37.97 E-value: 1.94e-03
|
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| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
507-575 | 3.56e-03 | ||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.76 E-value: 3.56e-03
|
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| KLF1_N | cd21581 | N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as ... |
473-561 | 5.04e-03 | ||||
N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as Krueppel-like factor 1 or Erythroid Kruppel-like Factor/EKLF) was the first Kruppel-like factor discovered. It was found to be vitally important for embryonic erythropoiesis in promoting the switch from fetal hemoglobin (Hemoglobin F) to adult hemoglobin (Hemoglobin A) gene expression by binding to highly conserved CACCC domains. EKLF ablation in mouse embryos produces a lethal anemic phenotype, causing death by embryonic day 14, and natural mutations lead to beta+ thalassemia in humans. However, expression of embryonic hemoglobin and fetal hemoglobin genes is normal in EKLF-deficient mice, suggesting other factors may be involved. KLF1 functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specifity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF1, which is related to the N-terminal domains of KLF2 and KLF4. Pssm-ID: 409227 [Multi-domain] Cd Length: 278 Bit Score: 40.03 E-value: 5.04e-03
|
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| SCO1860_LAETG | NF041527 | SCO1860 family LAETG-anchored protein; Members of this poorly characterized family, including ... |
417-537 | 7.72e-03 | ||||
SCO1860 family LAETG-anchored protein; Members of this poorly characterized family, including SCO1860 from Streptomyces coelicolor, are surface proteins whose C-terminus contains a variant type sortase recognition and cleavage sorting signal. The sorting signal motif, LAETG, is compatible with processing by a SrtE family sortase enzyme. Pssm-ID: 469412 [Multi-domain] Cd Length: 305 Bit Score: 39.34 E-value: 7.72e-03
|
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| Name | Accession | Description | Interval | E-value | |||||
| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
404-483 | 1.30e-25 | |||||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 101.15 E-value: 1.30e-25
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 1.91e-18 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 89.83 E-value: 1.91e-18
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 5.67e-18 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 88.67 E-value: 5.67e-18
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-573 | 8.25e-18 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 87.90 E-value: 8.25e-18
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-561 | 1.28e-17 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 87.52 E-value: 1.28e-17
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-573 | 5.84e-17 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 85.21 E-value: 5.84e-17
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-566 | 1.04e-16 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 84.44 E-value: 1.04e-16
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-605 | 3.01e-16 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 82.89 E-value: 3.01e-16
|
|||||||||
| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
481-561 | 3.55e-16 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 82.89 E-value: 3.55e-16
|
|||||||||
| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
485-573 | 4.41e-16 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 82.51 E-value: 4.41e-16
|
|||||||||
| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
460-573 | 3.47e-15 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 79.81 E-value: 3.47e-15
|
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| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
484-566 | 3.71e-14 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 76.35 E-value: 3.71e-14
|
|||||||||
| Peptidase_M10_C | pfam08548 | Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix ... |
803-884 | 1.61e-13 | |||||
Peptidase M10 serralysin C terminal; Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353. Pssm-ID: 430067 [Multi-domain] Cd Length: 222 Bit Score: 70.86 E-value: 1.61e-13
|
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| PRK10819 | PRK10819 | transport protein TonB; Provisional |
486-565 | 5.81e-13 | |||||
transport protein TonB; Provisional Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 69.71 E-value: 5.81e-13
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
481-583 | 1.60e-12 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 71.89 E-value: 1.60e-12
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-573 | 7.22e-12 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 69.24 E-value: 7.22e-12
|
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| Cornifin | pfam02389 | Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
485-558 | 2.06e-11 | |||||
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high. Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 62.38 E-value: 2.06e-11
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
482-566 | 3.25e-11 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 67.32 E-value: 3.25e-11
|
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| Cornifin | pfam02389 | Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
484-557 | 4.17e-11 | |||||
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high. Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 61.61 E-value: 4.17e-11
|
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| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
445-565 | 4.43e-11 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 67.03 E-value: 4.43e-11
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
480-555 | 4.78e-11 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 4.78e-11
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-566 | 5.15e-11 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 66.55 E-value: 5.15e-11
|
|||||||||
| Cornifin | pfam02389 | Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
485-559 | 5.21e-11 | |||||
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high. Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 61.22 E-value: 5.21e-11
|
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| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
482-570 | 8.37e-11 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 65.78 E-value: 8.37e-11
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
483-560 | 1.23e-10 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 65.73 E-value: 1.23e-10
|
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| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
484-558 | 1.44e-10 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 65.17 E-value: 1.44e-10
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-574 | 1.45e-10 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 65.01 E-value: 1.45e-10
|
|||||||||
| PRK11633 | PRK11633 | cell division protein DedD; Provisional |
479-568 | 1.53e-10 | |||||
cell division protein DedD; Provisional Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 61.94 E-value: 1.53e-10
|
|||||||||
| PRK10819 | PRK10819 | transport protein TonB; Provisional |
485-555 | 2.53e-10 | |||||
transport protein TonB; Provisional Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 61.62 E-value: 2.53e-10
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
485-568 | 3.96e-10 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 63.95 E-value: 3.96e-10
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
476-566 | 4.86e-10 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 63.47 E-value: 4.86e-10
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
479-579 | 5.37e-10 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 63.55 E-value: 5.37e-10
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
481-562 | 6.65e-10 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 63.25 E-value: 6.65e-10
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
485-555 | 1.08e-09 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 62.48 E-value: 1.08e-09
|
|||||||||
| Pro-rich | pfam15240 | Proline-rich protein; This family includes several eukaryotic proline-rich proteins. |
485-560 | 1.37e-09 | |||||
Proline-rich protein; This family includes several eukaryotic proline-rich proteins. Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 58.13 E-value: 1.37e-09
|
|||||||||
| PRK14948 | PRK14948 | DNA polymerase III subunit gamma/tau; |
476-561 | 1.82e-09 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 61.52 E-value: 1.82e-09
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
483-569 | 1.94e-09 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 61.54 E-value: 1.94e-09
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-565 | 2.15e-09 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 61.54 E-value: 2.15e-09
|
|||||||||
| PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
482-568 | 3.55e-09 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 60.59 E-value: 3.55e-09
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
481-573 | 3.61e-09 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 60.50 E-value: 3.61e-09
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
481-558 | 3.84e-09 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 60.85 E-value: 3.84e-09
|
|||||||||
| Pro-rich | pfam15240 | Proline-rich protein; This family includes several eukaryotic proline-rich proteins. |
481-560 | 3.94e-09 | |||||
Proline-rich protein; This family includes several eukaryotic proline-rich proteins. Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 56.58 E-value: 3.94e-09
|
|||||||||
| PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
481-572 | 4.07e-09 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 60.21 E-value: 4.07e-09
|
|||||||||
| Cornifin | pfam02389 | Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small ... |
490-560 | 4.75e-09 | |||||
Cornifin (SPRR) family; SPRR genes (formerly SPR) encode a novel class of polypeptides (small proline rich proteins) that are strongly induced during differentiation of human epidermal keratinocytes in vitro and in vivo. The most characteriztic feature of the SPRR gene family resides in the structure of the central segments of the encoded polypeptides that are built up from tandemly repeated units of either eight (SPRR1 and SPRR3) or nine (SPRR2) amino acids with the general consensus XKXPEPXX where X is any amino acid. In order to avoid bacterial contamination due to the high polar-nature of the HMM the threshold has been set very high. Pssm-ID: 280537 [Multi-domain] Cd Length: 135 Bit Score: 55.44 E-value: 4.75e-09
|
|||||||||
| PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
488-559 | 4.85e-09 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 60.14 E-value: 4.85e-09
|
|||||||||
| PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
481-554 | 5.02e-09 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 59.76 E-value: 5.02e-09
|
|||||||||
| Amelogenin | smart00818 | Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem ... |
484-558 | 5.15e-09 | |||||
Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Pssm-ID: 197891 [Multi-domain] Cd Length: 165 Bit Score: 56.34 E-value: 5.15e-09
|
|||||||||
| PHA02682 | PHA02682 | ORF080 virion core protein; Provisional |
457-565 | 6.52e-09 | |||||
ORF080 virion core protein; Provisional Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 57.95 E-value: 6.52e-09
|
|||||||||
| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
483-558 | 8.08e-09 | |||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 59.26 E-value: 8.08e-09
|
|||||||||
| FAP | pfam07174 | Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ... |
471-559 | 9.64e-09 | |||||
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Pssm-ID: 429334 Cd Length: 301 Bit Score: 57.63 E-value: 9.64e-09
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-572 | 9.97e-09 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 59.23 E-value: 9.97e-09
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
482-575 | 1.08e-08 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 58.96 E-value: 1.08e-08
|
|||||||||
| GGN | pfam15685 | Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the ... |
469-555 | 1.12e-08 | |||||
Gametogenetin; GGN is a family of proteins largely found in mammals. It reacts with POG in the maturation of sperm and is expressed virtually only in the testis. It is found to be associated with the intracellular membrane, binds with GGNBP1 and may be involved in vesicular trafficking. Pssm-ID: 434857 [Multi-domain] Cd Length: 668 Bit Score: 59.01 E-value: 1.12e-08
|
|||||||||
| PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
493-571 | 1.18e-08 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 58.60 E-value: 1.18e-08
|
|||||||||
| Amelogenin | smart00818 | Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem ... |
485-565 | 1.24e-08 | |||||
Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Pssm-ID: 197891 [Multi-domain] Cd Length: 165 Bit Score: 55.18 E-value: 1.24e-08
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
483-596 | 1.41e-08 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 58.94 E-value: 1.41e-08
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
485-570 | 1.74e-08 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 58.19 E-value: 1.74e-08
|
|||||||||
| COG5373 | COG5373 | Uncharacterized membrane protein [Function unknown]; |
474-555 | 1.74e-08 | |||||
Uncharacterized membrane protein [Function unknown]; Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 58.47 E-value: 1.74e-08
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
480-560 | 1.88e-08 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 58.24 E-value: 1.88e-08
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
484-576 | 1.94e-08 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 58.46 E-value: 1.94e-08
|
|||||||||
| PRK10819 | PRK10819 | transport protein TonB; Provisional |
498-593 | 2.57e-08 | |||||
transport protein TonB; Provisional Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 55.84 E-value: 2.57e-08
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
476-566 | 3.03e-08 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 58.03 E-value: 3.03e-08
|
|||||||||
| PRK01297 | PRK01297 | ATP-dependent RNA helicase RhlB; Provisional |
475-546 | 3.10e-08 | |||||
ATP-dependent RNA helicase RhlB; Provisional Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 57.23 E-value: 3.10e-08
|
|||||||||
| PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
476-566 | 3.37e-08 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 57.13 E-value: 3.37e-08
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
481-557 | 3.48e-08 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 57.38 E-value: 3.48e-08
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
482-572 | 4.11e-08 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 57.30 E-value: 4.11e-08
|
|||||||||
| DUF4813 | pfam16072 | Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. ... |
471-563 | 4.25e-08 | |||||
Domain of unknown function (DUF4813); This family of proteins is functionally uncharacterized. This family of proteins is found in eukaryotes. Proteins in this family are typically between 345 and 672 amino acids in length. Pssm-ID: 435117 [Multi-domain] Cd Length: 288 Bit Score: 55.53 E-value: 4.25e-08
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
478-558 | 5.84e-08 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 57.00 E-value: 5.84e-08
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
473-564 | 7.22e-08 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 56.61 E-value: 7.22e-08
|
|||||||||
| PRK13108 | PRK13108 | prolipoprotein diacylglyceryl transferase; Reviewed |
401-566 | 8.06e-08 | |||||
prolipoprotein diacylglyceryl transferase; Reviewed Pssm-ID: 237284 [Multi-domain] Cd Length: 460 Bit Score: 55.76 E-value: 8.06e-08
|
|||||||||
| DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
440-563 | 8.08e-08 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 55.63 E-value: 8.08e-08
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
482-576 | 8.12e-08 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.15 E-value: 8.12e-08
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
479-566 | 8.86e-08 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.88 E-value: 8.86e-08
|
|||||||||
| PRK11633 | PRK11633 | cell division protein DedD; Provisional |
477-550 | 8.96e-08 | |||||
cell division protein DedD; Provisional Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 53.85 E-value: 8.96e-08
|
|||||||||
| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
595-661 | 9.38e-08 | |||||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 50.30 E-value: 9.38e-08
|
|||||||||
| PTZ00144 | PTZ00144 | dihydrolipoamide succinyltransferase; Provisional |
412-542 | 1.01e-07 | |||||
dihydrolipoamide succinyltransferase; Provisional Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 55.46 E-value: 1.01e-07
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
483-569 | 1.05e-07 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.88 E-value: 1.05e-07
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
483-558 | 1.12e-07 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 55.93 E-value: 1.12e-07
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
479-564 | 1.19e-07 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 55.93 E-value: 1.19e-07
|
|||||||||
| DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
482-566 | 1.23e-07 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 55.24 E-value: 1.23e-07
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
482-564 | 1.24e-07 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.49 E-value: 1.24e-07
|
|||||||||
| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
486-559 | 1.28e-07 | |||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 55.40 E-value: 1.28e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
481-565 | 1.28e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.10 E-value: 1.28e-07
|
|||||||||
| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
487-559 | 1.45e-07 | |||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 55.01 E-value: 1.45e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
474-567 | 1.47e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 1.47e-07
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
482-570 | 1.54e-07 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 53.93 E-value: 1.54e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
471-569 | 1.55e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 55.71 E-value: 1.55e-07
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
482-556 | 1.66e-07 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 55.11 E-value: 1.66e-07
|
|||||||||
| Pro-rich | pfam15240 | Proline-rich protein; This family includes several eukaryotic proline-rich proteins. |
485-564 | 1.86e-07 | |||||
Proline-rich protein; This family includes several eukaryotic proline-rich proteins. Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 51.96 E-value: 1.86e-07
|
|||||||||
| Pro-rich | pfam15240 | Proline-rich protein; This family includes several eukaryotic proline-rich proteins. |
485-558 | 1.89e-07 | |||||
Proline-rich protein; This family includes several eukaryotic proline-rich proteins. Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 51.96 E-value: 1.89e-07
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-566 | 1.92e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.99 E-value: 1.92e-07
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
485-573 | 1.98e-07 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 53.54 E-value: 1.98e-07
|
|||||||||
| PRK12757 | PRK12757 | cell division protein FtsN; Provisional |
485-568 | 2.00e-07 | |||||
cell division protein FtsN; Provisional Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 53.12 E-value: 2.00e-07
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
481-558 | 2.14e-07 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 55.07 E-value: 2.14e-07
|
|||||||||
| PRK12757 | PRK12757 | cell division protein FtsN; Provisional |
492-572 | 2.38e-07 | |||||
cell division protein FtsN; Provisional Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 53.12 E-value: 2.38e-07
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
485-563 | 2.42e-07 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 54.77 E-value: 2.42e-07
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
482-571 | 2.44e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.61 E-value: 2.44e-07
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
482-565 | 2.59e-07 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 54.34 E-value: 2.59e-07
|
|||||||||
| PHA03291 | PHA03291 | envelope glycoprotein I; Provisional |
480-567 | 2.82e-07 | |||||
envelope glycoprotein I; Provisional Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 53.81 E-value: 2.82e-07
|
|||||||||
| PHA03169 | PHA03169 | hypothetical protein; Provisional |
481-577 | 3.00e-07 | |||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 53.82 E-value: 3.00e-07
|
|||||||||
| DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
476-565 | 3.04e-07 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 54.09 E-value: 3.04e-07
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
489-619 | 3.09e-07 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 54.71 E-value: 3.09e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
448-566 | 3.09e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.56 E-value: 3.09e-07
|
|||||||||
| DUF3729 | pfam12526 | Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
483-561 | 3.36e-07 | |||||
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 49.69 E-value: 3.36e-07
|
|||||||||
| DedD | COG3147 | Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
490-559 | 3.47e-07 | |||||
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 50.16 E-value: 3.47e-07
|
|||||||||
| DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
472-565 | 3.75e-07 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 53.70 E-value: 3.75e-07
|
|||||||||
| PDHac_trf_long | TIGR01348 | pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model ... |
410-606 | 3.90e-07 | |||||
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form; This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. [Energy metabolism, Pyruvate dehydrogenase] Pssm-ID: 273566 [Multi-domain] Cd Length: 546 Bit Score: 53.73 E-value: 3.90e-07
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
482-566 | 4.10e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 53.72 E-value: 4.10e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
481-564 | 4.37e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.17 E-value: 4.37e-07
|
|||||||||
| Atrophin-1 | pfam03154 | Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
361-565 | 4.38e-07 | |||||
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 54.00 E-value: 4.38e-07
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
481-571 | 4.43e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 53.72 E-value: 4.43e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
482-563 | 4.45e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.17 E-value: 4.45e-07
|
|||||||||
| PRK10927 | PRK10927 | cell division protein FtsN; |
484-612 | 4.47e-07 | |||||
cell division protein FtsN; Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 52.76 E-value: 4.47e-07
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
469-551 | 5.19e-07 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 53.74 E-value: 5.19e-07
|
|||||||||
| Amelogenin | smart00818 | Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem ... |
485-558 | 5.52e-07 | |||||
Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Pssm-ID: 197891 [Multi-domain] Cd Length: 165 Bit Score: 50.56 E-value: 5.52e-07
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-571 | 5.54e-07 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 53.34 E-value: 5.54e-07
|
|||||||||
| DUF3729 | pfam12526 | Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
468-556 | 5.56e-07 | |||||
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 48.92 E-value: 5.56e-07
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
485-575 | 5.98e-07 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 5.98e-07
|
|||||||||
| PRK01297 | PRK01297 | ATP-dependent RNA helicase RhlB; Provisional |
494-556 | 6.03e-07 | |||||
ATP-dependent RNA helicase RhlB; Provisional Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 52.99 E-value: 6.03e-07
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
444-607 | 6.07e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.45 E-value: 6.07e-07
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
481-556 | 6.10e-07 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 53.74 E-value: 6.10e-07
|
|||||||||
| Pro-rich | pfam15240 | Proline-rich protein; This family includes several eukaryotic proline-rich proteins. |
486-560 | 6.84e-07 | |||||
Proline-rich protein; This family includes several eukaryotic proline-rich proteins. Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 50.04 E-value: 6.84e-07
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
482-556 | 6.96e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.07 E-value: 6.96e-07
|
|||||||||
| PRK01297 | PRK01297 | ATP-dependent RNA helicase RhlB; Provisional |
489-551 | 7.22e-07 | |||||
ATP-dependent RNA helicase RhlB; Provisional Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 52.61 E-value: 7.22e-07
|
|||||||||
| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
482-558 | 7.24e-07 | |||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 52.70 E-value: 7.24e-07
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-576 | 7.64e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.07 E-value: 7.64e-07
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
483-568 | 8.31e-07 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 51.62 E-value: 8.31e-07
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
481-568 | 8.77e-07 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 53.17 E-value: 8.77e-07
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-570 | 8.91e-07 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.07 E-value: 8.91e-07
|
|||||||||
| Rib_recp_KP_reg | pfam05104 | Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
482-549 | 9.15e-07 | |||||
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 48.96 E-value: 9.15e-07
|
|||||||||
| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
482-554 | 9.89e-07 | |||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 52.31 E-value: 9.89e-07
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
473-566 | 1.15e-06 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.56 E-value: 1.15e-06
|
|||||||||
| PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
443-574 | 1.16e-06 | |||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 52.87 E-value: 1.16e-06
|
|||||||||
| Med25_SD1 | pfam11235 | Mediator complex subunit 25 synapsin 1; The overall function of the full-length Med25 is ... |
481-563 | 1.18e-06 | |||||
Mediator complex subunit 25 synapsin 1; The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA, domain, this SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This The function of the SD domains is unclear. Pssm-ID: 463244 [Multi-domain] Cd Length: 157 Bit Score: 49.40 E-value: 1.18e-06
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
487-568 | 1.24e-06 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.59 E-value: 1.24e-06
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
482-562 | 1.28e-06 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.18 E-value: 1.28e-06
|
|||||||||
| PRK01297 | PRK01297 | ATP-dependent RNA helicase RhlB; Provisional |
504-569 | 1.30e-06 | |||||
ATP-dependent RNA helicase RhlB; Provisional Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 51.84 E-value: 1.30e-06
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
482-562 | 1.34e-06 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.59 E-value: 1.34e-06
|
|||||||||
| DedD | COG3147 | Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
485-549 | 1.36e-06 | |||||
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 48.62 E-value: 1.36e-06
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
480-548 | 1.45e-06 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 51.23 E-value: 1.45e-06
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
479-572 | 1.47e-06 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 52.18 E-value: 1.47e-06
|
|||||||||
| PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
460-531 | 1.51e-06 | |||||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 52.08 E-value: 1.51e-06
|
|||||||||
| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
482-560 | 1.78e-06 | |||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 50.92 E-value: 1.78e-06
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
485-564 | 1.80e-06 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 51.99 E-value: 1.80e-06
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-573 | 1.86e-06 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.80 E-value: 1.86e-06
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
482-566 | 1.88e-06 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.79 E-value: 1.88e-06
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
481-563 | 1.90e-06 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.80 E-value: 1.90e-06
|
|||||||||
| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
501-557 | 2.03e-06 | |||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 51.55 E-value: 2.03e-06
|
|||||||||
| PAT1 | pfam09770 | Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
485-557 | 2.07e-06 | |||||
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division. Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 51.58 E-value: 2.07e-06
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
458-558 | 2.12e-06 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 52.01 E-value: 2.12e-06
|
|||||||||
| Amelogenin | smart00818 | Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem ... |
488-569 | 2.15e-06 | |||||
Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth; They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Pssm-ID: 197891 [Multi-domain] Cd Length: 165 Bit Score: 48.63 E-value: 2.15e-06
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
449-570 | 2.16e-06 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 51.58 E-value: 2.16e-06
|
|||||||||
| PRK14948 | PRK14948 | DNA polymerase III subunit gamma/tau; |
476-572 | 2.19e-06 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 51.50 E-value: 2.19e-06
|
|||||||||
| PRK12757 | PRK12757 | cell division protein FtsN; Provisional |
479-547 | 2.20e-06 | |||||
cell division protein FtsN; Provisional Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 50.04 E-value: 2.20e-06
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
477-557 | 2.33e-06 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 51.58 E-value: 2.33e-06
|
|||||||||
| PRK14971 | PRK14971 | DNA polymerase III subunit gamma/tau; |
478-584 | 2.48e-06 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 51.31 E-value: 2.48e-06
|
|||||||||
| PRK10927 | PRK10927 | cell division protein FtsN; |
473-572 | 2.66e-06 | |||||
cell division protein FtsN; Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 50.45 E-value: 2.66e-06
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
453-558 | 2.98e-06 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.48 E-value: 2.98e-06
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
473-572 | 3.52e-06 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 51.24 E-value: 3.52e-06
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
481-571 | 3.57e-06 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 51.03 E-value: 3.57e-06
|
|||||||||
| PRK14954 | PRK14954 | DNA polymerase III subunits gamma and tau; Provisional |
460-569 | 3.74e-06 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 50.71 E-value: 3.74e-06
|
|||||||||
| PspC_subgroup_1 | NF033838 | pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
491-564 | 4.05e-06 | |||||
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 50.78 E-value: 4.05e-06
|
|||||||||
| PHA03369 | PHA03369 | capsid maturational protease; Provisional |
467-574 | 4.36e-06 | |||||
capsid maturational protease; Provisional Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 50.38 E-value: 4.36e-06
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
486-566 | 4.86e-06 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 50.47 E-value: 4.86e-06
|
|||||||||
| Rib_recp_KP_reg | pfam05104 | Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
479-558 | 4.96e-06 | |||||
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 47.04 E-value: 4.96e-06
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
487-566 | 4.97e-06 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 50.42 E-value: 4.97e-06
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
486-572 | 5.50e-06 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 50.42 E-value: 5.50e-06
|
|||||||||
| Rib_recp_KP_reg | pfam05104 | Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
471-554 | 5.84e-06 | |||||
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 46.65 E-value: 5.84e-06
|
|||||||||
| PLN02226 | PLN02226 | 2-oxoglutarate dehydrogenase E2 component |
405-557 | 6.46e-06 | |||||
2-oxoglutarate dehydrogenase E2 component Pssm-ID: 177871 [Multi-domain] Cd Length: 463 Bit Score: 49.75 E-value: 6.46e-06
|
|||||||||
| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
480-565 | 8.01e-06 | |||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 49.00 E-value: 8.01e-06
|
|||||||||
| PRK10263 | PRK10263 | DNA translocase FtsK; Provisional |
452-574 | 8.22e-06 | |||||
DNA translocase FtsK; Provisional Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 50.08 E-value: 8.22e-06
|
|||||||||
| PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
479-544 | 9.52e-06 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 49.35 E-value: 9.52e-06
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
482-569 | 1.08e-05 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 49.09 E-value: 1.08e-05
|
|||||||||
| MISS | pfam15822 | MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic ... |
449-559 | 1.11e-05 | |||||
MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic MAPK-interacting and spindle-stabilising protein-like proteins. MISS is rich in prolines and has four potential MAPK-phosphorylation sites, a MAPK-docking site, a PEST sequence (PEST motif) and a bipartite nuclear localization signal. The endogenous protein accumulates during mouse meiotic maturation and is found as discrete dots on the MII spindle. MISS is the first example of a physiological MAPK-substrate that is stabilized in MII that specifically regulates MII spindle integrity during the CSF arrest. Pssm-ID: 318115 [Multi-domain] Cd Length: 238 Bit Score: 47.67 E-value: 1.11e-05
|
|||||||||
| PRK14950 | PRK14950 | DNA polymerase III subunits gamma and tau; Provisional |
493-570 | 1.12e-05 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 49.04 E-value: 1.12e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
482-558 | 1.18e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.10 E-value: 1.18e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-566 | 1.20e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.10 E-value: 1.20e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
481-565 | 1.23e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 49.10 E-value: 1.23e-05
|
|||||||||
| PRK14965 | PRK14965 | DNA polymerase III subunits gamma and tau; Provisional |
513-573 | 1.26e-05 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 48.97 E-value: 1.26e-05
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
482-566 | 1.27e-05 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 48.15 E-value: 1.27e-05
|
|||||||||
| PRK14954 | PRK14954 | DNA polymerase III subunits gamma and tau; Provisional |
484-579 | 1.28e-05 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 48.79 E-value: 1.28e-05
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
485-558 | 1.31e-05 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 49.30 E-value: 1.31e-05
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
485-559 | 1.36e-05 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 49.30 E-value: 1.36e-05
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
473-568 | 1.47e-05 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.17 E-value: 1.47e-05
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
473-565 | 1.51e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.08 E-value: 1.51e-05
|
|||||||||
| PRK12495 | PRK12495 | hypothetical protein; Provisional |
471-576 | 1.54e-05 | |||||
hypothetical protein; Provisional Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 47.17 E-value: 1.54e-05
|
|||||||||
| PTZ00144 | PTZ00144 | dihydrolipoamide succinyltransferase; Provisional |
493-566 | 1.61e-05 | |||||
dihydrolipoamide succinyltransferase; Provisional Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 48.14 E-value: 1.61e-05
|
|||||||||
| PRK12678 | PRK12678 | transcription termination factor Rho; Provisional |
481-573 | 1.89e-05 | |||||
transcription termination factor Rho; Provisional Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 48.36 E-value: 1.89e-05
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
482-565 | 2.03e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 48.31 E-value: 2.03e-05
|
|||||||||
| PRK01297 | PRK01297 | ATP-dependent RNA helicase RhlB; Provisional |
509-561 | 2.11e-05 | |||||
ATP-dependent RNA helicase RhlB; Provisional Pssm-ID: 234938 [Multi-domain] Cd Length: 475 Bit Score: 47.98 E-value: 2.11e-05
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-575 | 2.23e-05 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.44 E-value: 2.23e-05
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
492-573 | 2.30e-05 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.35 E-value: 2.30e-05
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
481-565 | 2.45e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 48.31 E-value: 2.45e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
482-566 | 2.50e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.95 E-value: 2.50e-05
|
|||||||||
| PTZ00441 | PTZ00441 | sporozoite surface protein 2 (SSP2); Provisional |
481-593 | 2.57e-05 | |||||
sporozoite surface protein 2 (SSP2); Provisional Pssm-ID: 240420 [Multi-domain] Cd Length: 576 Bit Score: 48.04 E-value: 2.57e-05
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
462-541 | 2.68e-05 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.35 E-value: 2.68e-05
|
|||||||||
| dnaA | PRK14086 | chromosomal replication initiator protein DnaA; |
485-593 | 2.80e-05 | |||||
chromosomal replication initiator protein DnaA; Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 47.90 E-value: 2.80e-05
|
|||||||||
| PRK14948 | PRK14948 | DNA polymerase III subunit gamma/tau; |
495-575 | 2.83e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 48.04 E-value: 2.83e-05
|
|||||||||
| PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
481-574 | 2.95e-05 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 47.79 E-value: 2.95e-05
|
|||||||||
| PHA03264 | PHA03264 | envelope glycoprotein D; Provisional |
488-559 | 3.08e-05 | |||||
envelope glycoprotein D; Provisional Pssm-ID: 223029 [Multi-domain] Cd Length: 416 Bit Score: 47.31 E-value: 3.08e-05
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
484-576 | 3.27e-05 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 47.67 E-value: 3.27e-05
|
|||||||||
| PHA03264 | PHA03264 | envelope glycoprotein D; Provisional |
455-555 | 3.54e-05 | |||||
envelope glycoprotein D; Provisional Pssm-ID: 223029 [Multi-domain] Cd Length: 416 Bit Score: 47.31 E-value: 3.54e-05
|
|||||||||
| DedD | COG3147 | Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
482-544 | 3.55e-05 | |||||
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 44.38 E-value: 3.55e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-566 | 3.61e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 3.61e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
488-563 | 4.03e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.56 E-value: 4.03e-05
|
|||||||||
| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
479-573 | 4.06e-05 | |||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 46.68 E-value: 4.06e-05
|
|||||||||
| PRK14971 | PRK14971 | DNA polymerase III subunit gamma/tau; |
481-567 | 4.51e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 47.08 E-value: 4.51e-05
|
|||||||||
| PHA03169 | PHA03169 | hypothetical protein; Provisional |
480-559 | 4.60e-05 | |||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.89 E-value: 4.60e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-565 | 4.70e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.18 E-value: 4.70e-05
|
|||||||||
| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
481-544 | 5.06e-05 | |||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 46.92 E-value: 5.06e-05
|
|||||||||
| COG5373 | COG5373 | Uncharacterized membrane protein [Function unknown]; |
496-564 | 5.14e-05 | |||||
Uncharacterized membrane protein [Function unknown]; Pssm-ID: 444140 [Multi-domain] Cd Length: 854 Bit Score: 47.30 E-value: 5.14e-05
|
|||||||||
| PRK14948 | PRK14948 | DNA polymerase III subunit gamma/tau; |
477-542 | 5.29e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 46.88 E-value: 5.29e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-569 | 5.43e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.18 E-value: 5.43e-05
|
|||||||||
| PRK10905 | PRK10905 | cell division protein DamX; Validated |
478-581 | 5.51e-05 | |||||
cell division protein DamX; Validated Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 46.47 E-value: 5.51e-05
|
|||||||||
| PRK08119 | PRK08119 | flagellar motor switch protein; Validated |
481-546 | 5.72e-05 | |||||
flagellar motor switch protein; Validated Pssm-ID: 236154 [Multi-domain] Cd Length: 382 Bit Score: 46.39 E-value: 5.72e-05
|
|||||||||
| PHA01929 | PHA01929 | putative scaffolding protein |
473-622 | 5.72e-05 | |||||
putative scaffolding protein Pssm-ID: 177328 Cd Length: 306 Bit Score: 46.20 E-value: 5.72e-05
|
|||||||||
| HemolysinCabind | pfam00353 | RTX calcium-binding nonapeptide repeat (4 copies); |
802-834 | 5.75e-05 | |||||
RTX calcium-binding nonapeptide repeat (4 copies); Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 40.88 E-value: 5.75e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
481-565 | 5.77e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.79 E-value: 5.77e-05
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
481-566 | 5.93e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.77 E-value: 5.93e-05
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
485-565 | 6.07e-05 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.24 E-value: 6.07e-05
|
|||||||||
| DamX | COG3266 | Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ... |
472-566 | 6.09e-05 | |||||
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442497 [Multi-domain] Cd Length: 455 Bit Score: 46.38 E-value: 6.09e-05
|
|||||||||
| PHA03160 | PHA03160 | hypothetical protein; Provisional |
503-564 | 6.16e-05 | |||||
hypothetical protein; Provisional Pssm-ID: 165431 Cd Length: 499 Bit Score: 46.62 E-value: 6.16e-05
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
484-574 | 7.03e-05 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.96 E-value: 7.03e-05
|
|||||||||
| PHA03169 | PHA03169 | hypothetical protein; Provisional |
481-588 | 7.60e-05 | |||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 46.12 E-value: 7.60e-05
|
|||||||||
| bchD | PRK13406 | magnesium chelatase subunit D; Provisional |
503-567 | 7.71e-05 | |||||
magnesium chelatase subunit D; Provisional Pssm-ID: 237378 [Multi-domain] Cd Length: 584 Bit Score: 46.56 E-value: 7.71e-05
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
488-564 | 7.89e-05 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.86 E-value: 7.89e-05
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
481-588 | 7.93e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 7.93e-05
|
|||||||||
| PRK10819 | PRK10819 | transport protein TonB; Provisional |
478-554 | 8.24e-05 | |||||
transport protein TonB; Provisional Pssm-ID: 236768 [Multi-domain] Cd Length: 246 Bit Score: 45.06 E-value: 8.24e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
482-565 | 8.33e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.41 E-value: 8.33e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
483-566 | 8.69e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.41 E-value: 8.69e-05
|
|||||||||
| PHA03160 | PHA03160 | hypothetical protein; Provisional |
481-550 | 9.06e-05 | |||||
hypothetical protein; Provisional Pssm-ID: 165431 Cd Length: 499 Bit Score: 46.23 E-value: 9.06e-05
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
484-571 | 9.88e-05 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 9.88e-05
|
|||||||||
| PRK14960 | PRK14960 | DNA polymerase III subunit gamma/tau; |
477-557 | 1.01e-04 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 46.19 E-value: 1.01e-04
|
|||||||||
| Pro-rich | pfam15240 | Proline-rich protein; This family includes several eukaryotic proline-rich proteins. |
485-550 | 1.03e-04 | |||||
Proline-rich protein; This family includes several eukaryotic proline-rich proteins. Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 43.87 E-value: 1.03e-04
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
484-572 | 1.07e-04 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 46.19 E-value: 1.07e-04
|
|||||||||
| PHA03379 | PHA03379 | EBNA-3A; Provisional |
485-558 | 1.25e-04 | |||||
EBNA-3A; Provisional Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 45.82 E-value: 1.25e-04
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
486-572 | 1.25e-04 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 45.07 E-value: 1.25e-04
|
|||||||||
| PHA03269 | PHA03269 | envelope glycoprotein C; Provisional |
488-566 | 1.28e-04 | |||||
envelope glycoprotein C; Provisional Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 45.87 E-value: 1.28e-04
|
|||||||||
| PRK14963 | PRK14963 | DNA polymerase III subunits gamma and tau; Provisional |
472-565 | 1.30e-04 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 45.60 E-value: 1.30e-04
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
498-565 | 1.31e-04 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 45.63 E-value: 1.31e-04
|
|||||||||
| motB | PRK05996 | MotB family protein; |
478-565 | 1.34e-04 | |||||
MotB family protein; Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 45.46 E-value: 1.34e-04
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
479-565 | 1.35e-04 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.08 E-value: 1.35e-04
|
|||||||||
| DUF3664 | pfam12406 | Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are ... |
486-554 | 1.40e-04 | |||||
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length. Pssm-ID: 289191 [Multi-domain] Cd Length: 99 Bit Score: 41.78 E-value: 1.40e-04
|
|||||||||
| PHA03160 | PHA03160 | hypothetical protein; Provisional |
493-555 | 1.52e-04 | |||||
hypothetical protein; Provisional Pssm-ID: 165431 Cd Length: 499 Bit Score: 45.46 E-value: 1.52e-04
|
|||||||||
| DUF3664 | pfam12406 | Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are ... |
485-563 | 1.56e-04 | |||||
Surface protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 131 and 312 amino acids in length. Pssm-ID: 289191 [Multi-domain] Cd Length: 99 Bit Score: 41.78 E-value: 1.56e-04
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
484-576 | 1.64e-04 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 45.42 E-value: 1.64e-04
|
|||||||||
| PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
449-573 | 1.83e-04 | |||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.55 E-value: 1.83e-04
|
|||||||||
| DedD | COG3147 | Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ... |
505-566 | 1.90e-04 | |||||
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442381 [Multi-domain] Cd Length: 140 Bit Score: 42.45 E-value: 1.90e-04
|
|||||||||
| PHA03160 | PHA03160 | hypothetical protein; Provisional |
488-555 | 1.98e-04 | |||||
hypothetical protein; Provisional Pssm-ID: 165431 Cd Length: 499 Bit Score: 45.08 E-value: 1.98e-04
|
|||||||||
| PHA03369 | PHA03369 | capsid maturational protease; Provisional |
482-576 | 1.99e-04 | |||||
capsid maturational protease; Provisional Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 44.99 E-value: 1.99e-04
|
|||||||||
| PRK11633 | PRK11633 | cell division protein DedD; Provisional |
498-566 | 2.00e-04 | |||||
cell division protein DedD; Provisional Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 43.84 E-value: 2.00e-04
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
480-557 | 2.01e-04 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 45.44 E-value: 2.01e-04
|
|||||||||
| PHA03160 | PHA03160 | hypothetical protein; Provisional |
498-569 | 2.03e-04 | |||||
hypothetical protein; Provisional Pssm-ID: 165431 Cd Length: 499 Bit Score: 45.08 E-value: 2.03e-04
|
|||||||||
| bchD | PRK13406 | magnesium chelatase subunit D; Provisional |
477-531 | 2.08e-04 | |||||
magnesium chelatase subunit D; Provisional Pssm-ID: 237378 [Multi-domain] Cd Length: 584 Bit Score: 45.02 E-value: 2.08e-04
|
|||||||||
| DUF2486 | pfam10667 | Protein of unknown function (DUF2486); This family is made up of members from various ... |
481-642 | 2.08e-04 | |||||
Protein of unknown function (DUF2486); This family is made up of members from various Burkholderia spp. The function is unknown. Pssm-ID: 402345 [Multi-domain] Cd Length: 251 Bit Score: 43.94 E-value: 2.08e-04
|
|||||||||
| PTZ00144 | PTZ00144 | dihydrolipoamide succinyltransferase; Provisional |
498-573 | 2.15e-04 | |||||
dihydrolipoamide succinyltransferase; Provisional Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 44.67 E-value: 2.15e-04
|
|||||||||
| PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
482-565 | 2.19e-04 | |||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 45.16 E-value: 2.19e-04
|
|||||||||
| Jun | pfam03957 | Jun-like transcription factor; |
481-558 | 2.21e-04 | |||||
Jun-like transcription factor; Pssm-ID: 461108 [Multi-domain] Cd Length: 231 Bit Score: 43.75 E-value: 2.21e-04
|
|||||||||
| FAP | pfam07174 | Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ... |
498-563 | 2.21e-04 | |||||
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Pssm-ID: 429334 Cd Length: 301 Bit Score: 44.15 E-value: 2.21e-04
|
|||||||||
| dnaA | PRK14086 | chromosomal replication initiator protein DnaA; |
478-558 | 2.34e-04 | |||||
chromosomal replication initiator protein DnaA; Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 44.82 E-value: 2.34e-04
|
|||||||||
| DUF3729 | pfam12526 | Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ... |
487-558 | 2.40e-04 | |||||
Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 41.60 E-value: 2.40e-04
|
|||||||||
| CEND1 | pfam15677 | Cell cycle exit and neuronal differentiation protein 1; This family of neuron-specific ... |
488-566 | 2.44e-04 | |||||
Cell cycle exit and neuronal differentiation protein 1; This family of neuron-specific proteins may have a role in the differentiation of neuroblastoma cells and neuronal precursors. It is involved in development of the cerebellum. Pssm-ID: 374010 [Multi-domain] Cd Length: 143 Bit Score: 42.28 E-value: 2.44e-04
|
|||||||||
| motB | PRK05996 | MotB family protein; |
487-607 | 2.46e-04 | |||||
MotB family protein; Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 44.69 E-value: 2.46e-04
|
|||||||||
| Rib_recp_KP_reg | pfam05104 | Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
485-565 | 2.60e-04 | |||||
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 42.03 E-value: 2.60e-04
|
|||||||||
| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
483-567 | 2.62e-04 | |||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 44.07 E-value: 2.62e-04
|
|||||||||
| dnaA | PRK14086 | chromosomal replication initiator protein DnaA; |
481-566 | 2.66e-04 | |||||
chromosomal replication initiator protein DnaA; Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 44.82 E-value: 2.66e-04
|
|||||||||
| PBP1 | COG5180 | PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
450-562 | 2.85e-04 | |||||
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 44.67 E-value: 2.85e-04
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
482-565 | 2.92e-04 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.84 E-value: 2.92e-04
|
|||||||||
| PHA01732 | PHA01732 | proline-rich protein |
483-522 | 2.98e-04 | |||||
proline-rich protein Pssm-ID: 222828 [Multi-domain] Cd Length: 94 Bit Score: 40.88 E-value: 2.98e-04
|
|||||||||
| PHA01732 | PHA01732 | proline-rich protein |
499-580 | 3.42e-04 | |||||
proline-rich protein Pssm-ID: 222828 [Multi-domain] Cd Length: 94 Bit Score: 40.49 E-value: 3.42e-04
|
|||||||||
| PHA03419 | PHA03419 | E4 protein; Provisional |
476-579 | 3.43e-04 | |||||
E4 protein; Provisional Pssm-ID: 223079 [Multi-domain] Cd Length: 200 Bit Score: 42.63 E-value: 3.43e-04
|
|||||||||
| PRK05733 | PRK05733 | single-stranded DNA-binding protein; Provisional |
495-546 | 3.71e-04 | |||||
single-stranded DNA-binding protein; Provisional Pssm-ID: 235585 [Multi-domain] Cd Length: 172 Bit Score: 42.22 E-value: 3.71e-04
|
|||||||||
| PHA03378 | PHA03378 | EBNA-3B; Provisional |
482-568 | 3.73e-04 | |||||
EBNA-3B; Provisional Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 44.29 E-value: 3.73e-04
|
|||||||||
| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
441-544 | 3.82e-04 | |||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 43.60 E-value: 3.82e-04
|
|||||||||
| flhF | PRK06995 | flagellar biosynthesis protein FlhF; |
480-565 | 4.15e-04 | |||||
flagellar biosynthesis protein FlhF; Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 43.80 E-value: 4.15e-04
|
|||||||||
| PRK12323 | PRK12323 | DNA polymerase III subunit gamma/tau; |
492-566 | 4.25e-04 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 44.10 E-value: 4.25e-04
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
482-565 | 4.27e-04 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 4.27e-04
|
|||||||||
| PAT1 | pfam09770 | Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
487-568 | 4.30e-04 | |||||
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division. Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 44.26 E-value: 4.30e-04
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
481-566 | 4.35e-04 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.07 E-value: 4.35e-04
|
|||||||||
| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
481-546 | 4.62e-04 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 4.62e-04
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
483-550 | 4.64e-04 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 4.64e-04
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
496-582 | 4.95e-04 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 44.11 E-value: 4.95e-04
|
|||||||||
| PBP1 | COG5180 | PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
449-567 | 5.37e-04 | |||||
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 43.51 E-value: 5.37e-04
|
|||||||||
| PRK05733 | PRK05733 | single-stranded DNA-binding protein; Provisional |
510-556 | 5.99e-04 | |||||
single-stranded DNA-binding protein; Provisional Pssm-ID: 235585 [Multi-domain] Cd Length: 172 Bit Score: 41.45 E-value: 5.99e-04
|
|||||||||
| PRK14971 | PRK14971 | DNA polymerase III subunit gamma/tau; |
476-565 | 6.57e-04 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 43.61 E-value: 6.57e-04
|
|||||||||
| PBP1 | COG5180 | PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
459-563 | 6.71e-04 | |||||
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 43.51 E-value: 6.71e-04
|
|||||||||
| PRK10856 | PRK10856 | cytoskeleton protein RodZ; |
470-565 | 6.94e-04 | |||||
cytoskeleton protein RodZ; Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 42.71 E-value: 6.94e-04
|
|||||||||
| PHA03169 | PHA03169 | hypothetical protein; Provisional |
482-558 | 6.97e-04 | |||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 43.04 E-value: 6.97e-04
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
503-569 | 6.98e-04 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.32 E-value: 6.98e-04
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
446-570 | 7.28e-04 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.32 E-value: 7.28e-04
|
|||||||||
| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
422-563 | 7.29e-04 | |||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.83 E-value: 7.29e-04
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
484-580 | 7.51e-04 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.49 E-value: 7.51e-04
|
|||||||||
| PHA03269 | PHA03269 | envelope glycoprotein C; Provisional |
447-563 | 7.60e-04 | |||||
envelope glycoprotein C; Provisional Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 43.18 E-value: 7.60e-04
|
|||||||||
| rne | PRK10811 | ribonuclease E; Reviewed |
490-570 | 7.90e-04 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 43.49 E-value: 7.90e-04
|
|||||||||
| PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
481-588 | 8.01e-04 | |||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 8.01e-04
|
|||||||||
| PRK07994 | PRK07994 | DNA polymerase III subunits gamma and tau; Validated |
479-570 | 8.14e-04 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 43.32 E-value: 8.14e-04
|
|||||||||
| PRK05733 | PRK05733 | single-stranded DNA-binding protein; Provisional |
490-541 | 8.32e-04 | |||||
single-stranded DNA-binding protein; Provisional Pssm-ID: 235585 [Multi-domain] Cd Length: 172 Bit Score: 41.07 E-value: 8.32e-04
|
|||||||||
| PRK05733 | PRK05733 | single-stranded DNA-binding protein; Provisional |
500-551 | 8.63e-04 | |||||
single-stranded DNA-binding protein; Provisional Pssm-ID: 235585 [Multi-domain] Cd Length: 172 Bit Score: 41.07 E-value: 8.63e-04
|
|||||||||
| PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
481-569 | 9.36e-04 | |||||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 9.36e-04
|
|||||||||
| PLN02983 | PLN02983 | biotin carboxyl carrier protein of acetyl-CoA carboxylase |
509-557 | 9.68e-04 | |||||
biotin carboxyl carrier protein of acetyl-CoA carboxylase Pssm-ID: 215533 [Multi-domain] Cd Length: 274 Bit Score: 42.13 E-value: 9.68e-04
|
|||||||||
| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
486-576 | 1.05e-03 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 41.99 E-value: 1.05e-03
|
|||||||||
| PABP-1234 | TIGR01628 | polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ... |
474-565 | 1.05e-03 | |||||
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range. Pssm-ID: 130689 [Multi-domain] Cd Length: 562 Bit Score: 42.87 E-value: 1.05e-03
|
|||||||||
| PRK08691 | PRK08691 | DNA polymerase III subunits gamma and tau; Validated |
452-572 | 1.13e-03 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.77 E-value: 1.13e-03
|
|||||||||
| SepH | NF040712 | septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
479-566 | 1.20e-03 | |||||
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments. Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 42.06 E-value: 1.20e-03
|
|||||||||
| PHA03264 | PHA03264 | envelope glycoprotein D; Provisional |
493-566 | 1.26e-03 | |||||
envelope glycoprotein D; Provisional Pssm-ID: 223029 [Multi-domain] Cd Length: 416 Bit Score: 42.30 E-value: 1.26e-03
|
|||||||||
| HemolysinCabind | pfam00353 | RTX calcium-binding nonapeptide repeat (4 copies); |
808-847 | 1.27e-03 | |||||
RTX calcium-binding nonapeptide repeat (4 copies); Pssm-ID: 459777 [Multi-domain] Cd Length: 36 Bit Score: 37.03 E-value: 1.27e-03
|
|||||||||
| PRK05733 | PRK05733 | single-stranded DNA-binding protein; Provisional |
481-516 | 1.43e-03 | |||||
single-stranded DNA-binding protein; Provisional Pssm-ID: 235585 [Multi-domain] Cd Length: 172 Bit Score: 40.68 E-value: 1.43e-03
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
481-566 | 1.47e-03 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.53 E-value: 1.47e-03
|
|||||||||
| PRK14949 | PRK14949 | DNA polymerase III subunits gamma and tau; Provisional |
471-601 | 1.47e-03 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 42.40 E-value: 1.47e-03
|
|||||||||
| kgd | PRK12270 | multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
483-543 | 1.48e-03 | |||||
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit; Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 42.57 E-value: 1.48e-03
|
|||||||||
| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
482-570 | 1.52e-03 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 42.53 E-value: 1.52e-03
|
|||||||||
| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
483-566 | 1.54e-03 | |||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 41.75 E-value: 1.54e-03
|
|||||||||
| PRK12373 | PRK12373 | NADH-quinone oxidoreductase subunit E; |
449-572 | 1.59e-03 | |||||
NADH-quinone oxidoreductase subunit E; Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 41.71 E-value: 1.59e-03
|
|||||||||
| sucB | TIGR01347 | 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
493-573 | 1.70e-03 | |||||
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle] Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 41.64 E-value: 1.70e-03
|
|||||||||
| dnaA | PRK14086 | chromosomal replication initiator protein DnaA; |
483-557 | 1.76e-03 | |||||
chromosomal replication initiator protein DnaA; Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 42.12 E-value: 1.76e-03
|
|||||||||
| PHA03307 | PHA03307 | transcriptional regulator ICP4; Provisional |
481-565 | 1.76e-03 | |||||
transcriptional regulator ICP4; Provisional Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 1.76e-03
|
|||||||||
| PRK12495 | PRK12495 | hypothetical protein; Provisional |
477-589 | 1.85e-03 | |||||
hypothetical protein; Provisional Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 41.01 E-value: 1.85e-03
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| motB | PRK05996 | MotB family protein; |
482-565 | 1.88e-03 | |||||
MotB family protein; Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 41.61 E-value: 1.88e-03
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| Jun | pfam03957 | Jun-like transcription factor; |
479-528 | 1.88e-03 | |||||
Jun-like transcription factor; Pssm-ID: 461108 [Multi-domain] Cd Length: 231 Bit Score: 41.05 E-value: 1.88e-03
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| Big_11 | pfam18200 | Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface ... |
71-143 | 1.94e-03 | |||||
Bacterial Ig-like domain; This presumed domain is found repeat in bacterial cell surface proteins. Pssm-ID: 436343 [Multi-domain] Cd Length: 80 Bit Score: 37.97 E-value: 1.94e-03
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| tolA_full | TIGR02794 | TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
482-566 | 2.13e-03 | |||||
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis] Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 41.37 E-value: 2.13e-03
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| Amelin | smart00817 | Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin ... |
472-559 | 2.38e-03 | |||||
Ameloblastin precursor (Amelin); This family consists of several mammalian Ameloblastin precursor (Amelin) proteins. Matrix proteins of tooth enamel consist mainly of amelogenin but also of non-amelogenin proteins, which, although their volumetric percentage is low, have an important role in enamel mineralisation. One of the non-amelogenin proteins is ameloblastin, also known as amelin and sheathlin. Ameloblastin (AMBN) is one of the enamel sheath proteins which is though to have a role in determining the prismatic structure of growing enamel crystals. Pssm-ID: 214832 [Multi-domain] Cd Length: 411 Bit Score: 41.41 E-value: 2.38e-03
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| flhF | PRK06995 | flagellar biosynthesis protein FlhF; |
482-570 | 2.46e-03 | |||||
flagellar biosynthesis protein FlhF; Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 41.49 E-value: 2.46e-03
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| Jun | pfam03957 | Jun-like transcription factor; |
480-543 | 2.51e-03 | |||||
Jun-like transcription factor; Pssm-ID: 461108 [Multi-domain] Cd Length: 231 Bit Score: 40.67 E-value: 2.51e-03
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| PHA00666 | PHA00666 | putative protease |
480-569 | 2.57e-03 | |||||
putative protease Pssm-ID: 222808 [Multi-domain] Cd Length: 233 Bit Score: 40.41 E-value: 2.57e-03
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| flhF | PRK06995 | flagellar biosynthesis protein FlhF; |
481-573 | 2.71e-03 | |||||
flagellar biosynthesis protein FlhF; Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 41.11 E-value: 2.71e-03
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| PHA02030 | PHA02030 | hypothetical protein |
474-559 | 2.83e-03 | |||||
hypothetical protein Pssm-ID: 222843 [Multi-domain] Cd Length: 336 Bit Score: 41.12 E-value: 2.83e-03
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| Rib_recp_KP_reg | pfam05104 | Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
490-562 | 3.39e-03 | |||||
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 38.95 E-value: 3.39e-03
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| PRK14948 | PRK14948 | DNA polymerase III subunit gamma/tau; |
466-532 | 3.49e-03 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 41.10 E-value: 3.49e-03
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| SAV_2336_NTERM | NF041121 | SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ... |
507-575 | 3.56e-03 | |||||
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems. Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 40.76 E-value: 3.56e-03
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| dnaA | PRK14086 | chromosomal replication initiator protein DnaA; |
477-553 | 3.70e-03 | |||||
chromosomal replication initiator protein DnaA; Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 40.96 E-value: 3.70e-03
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| PRK06975 | PRK06975 | bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
499-554 | 4.24e-03 | |||||
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 40.86 E-value: 4.24e-03
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| PHA03169 | PHA03169 | hypothetical protein; Provisional |
481-594 | 4.32e-03 | |||||
hypothetical protein; Provisional Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 40.72 E-value: 4.32e-03
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| rne | PRK10811 | ribonuclease E; Reviewed |
505-578 | 4.35e-03 | |||||
ribonuclease E; Reviewed Pssm-ID: 236766 [Multi-domain] Cd Length: 1068 Bit Score: 40.79 E-value: 4.35e-03
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| PRK12373 | PRK12373 | NADH-quinone oxidoreductase subunit E; |
433-566 | 4.53e-03 | |||||
NADH-quinone oxidoreductase subunit E; Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 40.56 E-value: 4.53e-03
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| PRK11855 | PRK11855 | dihydrolipoamide acetyltransferase; Reviewed |
453-529 | 4.71e-03 | |||||
dihydrolipoamide acetyltransferase; Reviewed Pssm-ID: 237000 [Multi-domain] Cd Length: 547 Bit Score: 40.58 E-value: 4.71e-03
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| KLF1_N | cd21581 | N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as ... |
473-561 | 5.04e-03 | |||||
N-terminal domain of Kruppel-like Factor 1; Kruppel-like Factor 1 (KLF1, also known as Krueppel-like factor 1 or Erythroid Kruppel-like Factor/EKLF) was the first Kruppel-like factor discovered. It was found to be vitally important for embryonic erythropoiesis in promoting the switch from fetal hemoglobin (Hemoglobin F) to adult hemoglobin (Hemoglobin A) gene expression by binding to highly conserved CACCC domains. EKLF ablation in mouse embryos produces a lethal anemic phenotype, causing death by embryonic day 14, and natural mutations lead to beta+ thalassemia in humans. However, expression of embryonic hemoglobin and fetal hemoglobin genes is normal in EKLF-deficient mice, suggesting other factors may be involved. KLF1 functions as a transcriptional activator. It belongs to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specifity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the N-terminal domain of KLF1, which is related to the N-terminal domains of KLF2 and KLF4. Pssm-ID: 409227 [Multi-domain] Cd Length: 278 Bit Score: 40.03 E-value: 5.04e-03
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| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
498-555 | 5.49e-03 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.60 E-value: 5.49e-03
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| PRK07764 | PRK07764 | DNA polymerase III subunits gamma and tau; Validated |
474-541 | 6.19e-03 | |||||
DNA polymerase III subunits gamma and tau; Validated Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.35 E-value: 6.19e-03
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| PRK14949 | PRK14949 | DNA polymerase III subunits gamma and tau; Provisional |
449-583 | 6.19e-03 | |||||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 40.48 E-value: 6.19e-03
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| FimV | COG3170 | Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; |
441-555 | 6.29e-03 | |||||
Type IV pilus assembly protein FimV [Cell motility, Extracellular structures]; Pssm-ID: 442403 [Multi-domain] Cd Length: 508 Bit Score: 40.16 E-value: 6.29e-03
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| PRK07003 | PRK07003 | DNA polymerase III subunit gamma/tau; |
488-545 | 7.08e-03 | |||||
DNA polymerase III subunit gamma/tau; Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.22 E-value: 7.08e-03
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| SCO1860_LAETG | NF041527 | SCO1860 family LAETG-anchored protein; Members of this poorly characterized family, including ... |
417-537 | 7.72e-03 | |||||
SCO1860 family LAETG-anchored protein; Members of this poorly characterized family, including SCO1860 from Streptomyces coelicolor, are surface proteins whose C-terminus contains a variant type sortase recognition and cleavage sorting signal. The sorting signal motif, LAETG, is compatible with processing by a SrtE family sortase enzyme. Pssm-ID: 469412 [Multi-domain] Cd Length: 305 Bit Score: 39.34 E-value: 7.72e-03
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| ZipA | COG3115 | Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome ... |
481-532 | 7.94e-03 | |||||
Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 442349 [Multi-domain] Cd Length: 298 Bit Score: 39.29 E-value: 7.94e-03
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| motB | PRK05996 | MotB family protein; |
456-568 | 8.21e-03 | |||||
MotB family protein; Pssm-ID: 235665 [Multi-domain] Cd Length: 423 Bit Score: 39.68 E-value: 8.21e-03
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| Blast search parameters | ||||
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