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Conserved domains on  [gi|496524560|ref|WP_009232843|]
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PqqD family protein [Actinomyces johnsonii]

Protein Classification

PqqD family protein( domain architecture ID 10526818)

PqqD family protein such as pyrroloquinoline quinone biosynthesis protein PqqD, which may serve as a PQQ carrier

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 41-102 1.37e-06

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


:

Pssm-ID: 461641  Cd Length: 65  Bit Score: 45.16  E-value: 1.37e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496524560   41 MLFDSDSGKYHRLGAAAAFIVNQFDGVRSLPTIIEELPQ--DIDEAGAKR-ITSLVDNLRDKSLL 102
Cdd:pfam05402   1 VLLDPETGKYISLNETGAFIWELLDGRTTVEEIVAALAEeyDVDEEEAEAdVEAFLEQLREAGLI 65
 
Name Accession Description Interval E-value
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 41-102 1.37e-06

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 45.16  E-value: 1.37e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496524560   41 MLFDSDSGKYHRLGAAAAFIVNQFDGVRSLPTIIEELPQ--DIDEAGAKR-ITSLVDNLRDKSLL 102
Cdd:pfam05402   1 VLLDPETGKYISLNETGAFIWELLDGRTTVEEIVAALAEeyDVDEEEAEAdVEAFLEQLREAGLI 65
SCM_PqqD_rel TIGR04248
SynChlorMet cassette protein ScmD; A biosynthesis cassette found in Syntrophobacter ...
 37-106 7.53e-03

SynChlorMet cassette protein ScmD; A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Members of this family are the PqqD-like protein.


Pssm-ID: 211971  Cd Length: 84  Bit Score: 35.23  E-value: 7.53e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496524560   37 DNQPMLFDSDSGKYHRLGAAAAFIVNQFDGVRSLPTIIEELPQDIDEAGAK---RITSLVDNLRDKSlLAGSE 106
Cdd:TIGR04248  13 DDWAILFDPDDGQSFGLNPVSVFIWKRLDGKHTVSDIVSEIRNRFDEVPEHaedSVRVFVEDLIDRG-LAGCE 84
 
Name Accession Description Interval E-value
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 41-102 1.37e-06

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 45.16  E-value: 1.37e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 496524560   41 MLFDSDSGKYHRLGAAAAFIVNQFDGVRSLPTIIEELPQ--DIDEAGAKR-ITSLVDNLRDKSLL 102
Cdd:pfam05402   1 VLLDPETGKYISLNETGAFIWELLDGRTTVEEIVAALAEeyDVDEEEAEAdVEAFLEQLREAGLI 65
SCM_PqqD_rel TIGR04248
SynChlorMet cassette protein ScmD; A biosynthesis cassette found in Syntrophobacter ...
 37-106 7.53e-03

SynChlorMet cassette protein ScmD; A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Members of this family are the PqqD-like protein.


Pssm-ID: 211971  Cd Length: 84  Bit Score: 35.23  E-value: 7.53e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496524560   37 DNQPMLFDSDSGKYHRLGAAAAFIVNQFDGVRSLPTIIEELPQDIDEAGAK---RITSLVDNLRDKSlLAGSE 106
Cdd:TIGR04248  13 DDWAILFDPDDGQSFGLNPVSVFIWKRLDGKHTVSDIVSEIRNRFDEVPEHaedSVRVFVEDLIDRG-LAGCE 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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