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Conserved domains on  [gi|496845386|ref|WP_009383631|]
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UPF0223 family protein [Staphylococcus massiliensis]

Protein Classification

UPF0223 family protein( domain architecture ID 10012204)

UPF0223 family protein similar to Bacillus subtilis YktA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK04387 PRK04387
hypothetical protein; Provisional
1-86 6.27e-41

hypothetical protein; Provisional


:

Pssm-ID: 179841  Cd Length: 90  Bit Score: 129.31  E-value: 6.27e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386  1 MEYNYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKA 80
Cdd:PRK04387  1 MEYQYPLDLDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKVSGYSIYRAVQKAKE 80

                ....*.
gi 496845386 81 HEAGSI 86
Cdd:PRK04387 81 IEEGKI 86
 
Name Accession Description Interval E-value
PRK04387 PRK04387
hypothetical protein; Provisional
1-86 6.27e-41

hypothetical protein; Provisional


Pssm-ID: 179841  Cd Length: 90  Bit Score: 129.31  E-value: 6.27e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386  1 MEYNYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKA 80
Cdd:PRK04387  1 MEYQYPLDLDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKVSGYSIYRAVQKAKE 80

                ....*.
gi 496845386 81 HEAGSI 86
Cdd:PRK04387 81 IEEGKI 86
UPF0223 pfam05256
Uncharacterized protein family (UPF0223); This family of proteins is functionally ...
2-86 2.59e-39

Uncharacterized protein family (UPF0223); This family of proteins is functionally uncharacterized.


Pssm-ID: 428396  Cd Length: 85  Bit Score: 125.02  E-value: 2.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386   2 EYNYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKAH 81
Cdd:pfam05256  1 NYSYPLDLDWSTEEIIDVVNFFEAVEKAYEKGVDREELLDAYRRFKEVVPSKSEEKQLFREFEKASGYSIYRTVKKAKES 80

                 ....*
gi 496845386  82 EAGSI 86
Cdd:pfam05256 81 EKGKI 85
YktA COG4476
Uncharacterized conserved protein YktA, UPF0223 family [Function unknown];
4-86 5.09e-38

Uncharacterized conserved protein YktA, UPF0223 family [Function unknown];


Pssm-ID: 443573  Cd Length: 86  Bit Score: 121.88  E-value: 5.09e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386  4 NYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKAHEA 83
Cdd:COG4476   1 SYPLDLDWSTEEIIDVVNFFSAVEKAYEKGVEREDLLEAYRRFKEVVPSKSEEKQLFREFEEASGYSLYRVVKKAKETEK 80

                ...
gi 496845386 84 GSI 86
Cdd:COG4476  81 GKI 83
 
Name Accession Description Interval E-value
PRK04387 PRK04387
hypothetical protein; Provisional
1-86 6.27e-41

hypothetical protein; Provisional


Pssm-ID: 179841  Cd Length: 90  Bit Score: 129.31  E-value: 6.27e-41
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386  1 MEYNYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKA 80
Cdd:PRK04387  1 MEYQYPLDLDWSTEEMISVLHFFNAVEKAYEKGVDAEELLDAYRRFKEIVPSKAEEKQIDREFEKVSGYSIYRAVQKAKE 80

                ....*.
gi 496845386 81 HEAGSI 86
Cdd:PRK04387 81 IEEGKI 86
UPF0223 pfam05256
Uncharacterized protein family (UPF0223); This family of proteins is functionally ...
2-86 2.59e-39

Uncharacterized protein family (UPF0223); This family of proteins is functionally uncharacterized.


Pssm-ID: 428396  Cd Length: 85  Bit Score: 125.02  E-value: 2.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386   2 EYNYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKAH 81
Cdd:pfam05256  1 NYSYPLDLDWSTEEIIDVVNFFEAVEKAYEKGVDREELLDAYRRFKEVVPSKSEEKQLFREFEKASGYSIYRTVKKAKES 80

                 ....*
gi 496845386  82 EAGSI 86
Cdd:pfam05256 81 EKGKI 85
YktA COG4476
Uncharacterized conserved protein YktA, UPF0223 family [Function unknown];
4-86 5.09e-38

Uncharacterized conserved protein YktA, UPF0223 family [Function unknown];


Pssm-ID: 443573  Cd Length: 86  Bit Score: 121.88  E-value: 5.09e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496845386  4 NYPIDLDWTNDEMMAVVSFFNSIEAYYEDKVERDVVLERYNQFKKIVPGKAEEKQIFKEFHKRSGFDSYPVVKEAKAHEA 83
Cdd:COG4476   1 SYPLDLDWSTEEIIDVVNFFSAVEKAYEKGVEREDLLEAYRRFKEVVPSKSEEKQLFREFEEASGYSLYRVVKKAKETEK 80

                ...
gi 496845386 84 GSI 86
Cdd:COG4476  81 GKI 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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