NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|496863429|ref|WP_009389439|]
View 

MULTISPECIES: outer membrane protein Omp38 [Acinetobacter]

Protein Classification

OmpA family protein( domain architecture ID 11458388)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395|22986056
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 220-322 6.45e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 141.54  E-value: 6.45e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 220 ELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYnVDASRLSTQ 299
Cdd:cd07185    1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKG-VDASRITAV 79

                         90       100
                 ....*....|....*....|...
gi 496863429 300 GFAWDQPIADNKTKEGRAMNRRV 322
Cdd:cd07185   80 GYGESRPIASNDTEEGRAKNRRV 102
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 36-322 2.29e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 138.38  E-value: 2.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  36 DSDHNNDKLTSHAELQDDLFVGAALGVELTPWLGFEAEYNQVKGDLDGTGVAGAEYKQKTVAGNFYATSDLITKNYDSKF 115
Cdd:COG2885    2 SEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSAT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 116 KPYVLLGAGQTKTEFDGIYEDKKDTIGNAGVGAFYRLNDALSLRTEARGTYDFDEKYWRYTALAGLNVVLGGHLKPAAPV 195
Cdd:COG2885   82 AAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 196 VEVAPVEPTPVAPQPQELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSL 275
Cdd:COG2885  162 AAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSE 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 496863429 276 ARANSVKSALVnEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:COG2885  242 RRAEAVKDYLV-SKGIPASRITAVGYGESRPVASNDTEEGRAKNRRV 287
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 220-322 6.45e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 141.54  E-value: 6.45e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 220 ELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYnVDASRLSTQ 299
Cdd:cd07185    1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKG-VDASRITAV 79

                         90       100
                 ....*....|....*....|...
gi 496863429 300 GFAWDQPIADNKTKEGRAMNRRV 322
Cdd:cd07185   80 GYGESRPIASNDTEEGRAKNRRV 102
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 36-322 2.29e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 138.38  E-value: 2.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  36 DSDHNNDKLTSHAELQDDLFVGAALGVELTPWLGFEAEYNQVKGDLDGTGVAGAEYKQKTVAGNFYATSDLITKNYDSKF 115
Cdd:COG2885    2 SEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSAT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 116 KPYVLLGAGQTKTEFDGIYEDKKDTIGNAGVGAFYRLNDALSLRTEARGTYDFDEKYWRYTALAGLNVVLGGHLKPAAPV 195
Cdd:COG2885   82 AAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 196 VEVAPVEPTPVAPQPQELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSL 275
Cdd:COG2885  162 AAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSE 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 496863429 276 ARANSVKSALVnEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:COG2885  242 RRAEAVKDYLV-SKGIPASRITAVGYGESRPVASNDTEEGRAKNRRV 287
PRK10510 PRK10510
OmpA family lipoprotein;
217-327 8.57e-27

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 105.34  E-value: 8.57e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 217 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEyNVDASRL 296
Cdd:PRK10510 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-GVDASRI 186

                         90       100       110
                 ....*....|....*....|....*....|.
gi 496863429 297 STQGFAWDQPIADNKTKEGRAMNRRVFATIT 327
Cdd:PRK10510 187 RTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
MotB COG1360
Flagellar motor protein MotB [Cell motility];
222-322 1.05e-26

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 103.77  E-value: 1.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATaRIEGHTDN----TGPRKLNERLSLARANSVKSALVnEYNVDASRLS 297
Cdd:COG1360   60 RVLFDSGSAELTPEGRELLDKIAAVLAEVPNRI-RVEGHTDNvpisTARFPSNWELSAARAAAVVRYLI-EGGVPPERLS 137

                         90       100
                 ....*....|....*....|....*
gi 496863429 298 TQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:COG1360  138 AVGYGDTRPLAPNDTPEGRARNRRV 162
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 225-322 9.72e-23

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 91.98  E-value: 9.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  225 FDTNKSNIKDQYKPEIAKVAEKLTEYPNAtARIEGHTDN----TGPRKLNERLSLARANSVKSALVnEYNVDASRLSTQG 300
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNvpirTARFPSNWHLSEARAKAVADVLA-QAGGPAGRVRAEG 111

                          90       100
                  ....*....|....*....|..
gi 496863429  301 FAWDQPIADNKTKEGRAMNRRV 322
Cdd:TIGR03350 112 RGDSEPIASNATAAGRARNRRV 133
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 225-319 3.18e-20

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 83.95  E-value: 3.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  225 FDTNKSNIKDQYKPEIAKVAEKLTEYPN-ATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYnVDASRLSTQGFAW 303
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFG-VPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 496863429  304 DQPIADNKTKEGRAMN 319
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
PRK10808 PRK10808
outer membrane protein A; Reviewed
 30-338 2.63e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 60.86  E-value: 2.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  30 VGYTWQDSDHNNDKltshaelqDDLFVGAALGVELTPWLGFEAEYNQV-----KGDLDgTGVAGAEYKQKTVAGNFYATS 104
Cdd:PRK10808  42 TGYGFINNNGPTHK--------NQLGAGAFGGYQANPYLGFEMGYDWLgrmpyKGDVN-NGAFKAQGVQLTAKLGYPITD 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 105 DLitknydskfKPYVLLGAG----QTKTEFDGIYEDKKDTIGN--AGVGAFYRLNDALSLRTEARGTY---DFDEKYWRY 175
Cdd:PRK10808 113 DL---------DVYTRLGGMvwraDTKSNVPGARGKDHDTGVSpvFAGGVEYAITKNWATRLEYQWTNnigDADTVGARP 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 176 -TALAGLNVVLGGHLKPAAPVVEVAPveptpvAPQPQELTEDLNMELRVFFDTNKSNIK-------DQYKPEIAKVAEKl 247
Cdd:PRK10808 184 dNGMLSVGVSYRFGQEEAAPVVAPAP------APAPVVQTKHFTLKSDVLFNFNKATLKpegqqalDQLYSQLSNLDPK- 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 248 teypNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEyNVDASRLSTQGFAWDQPIADNK--TKEGR-------AM 318
Cdd:PRK10808 257 ----DGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSK-GIPADKISARGMGKSNPVTGNTcdNVKPRaalidclAP 331

                        330       340
                 ....*....|....*....|
gi 496863429 319 NRRVFATITGSRTVVVQPGQ 338
Cdd:PRK10808 332 DRRVEIEVKGIKDVVTQPQA 351
OMP_b-brl pfam13505
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 30-172 6.62e-10

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 463903 [Multi-domain]  Cd Length: 175  Bit Score: 57.41  E-value: 6.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429   30 VGYTWQDSDHNNDKLTshaelqDDLFVGAALGVELTPWLGFEAEYN-QVKGDLDGTGVAGAEYKQKTVAGNFYATSDLit 108
Cdd:pfam13505  26 GGLGNANFSFDGDGTD------SGGGFGVGAGYDFNDYLGVEGELGyGSDDDYSGGGNTDANIRSLSIGVNLGYRFPL-- 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496863429  109 knyDSKFKPYVLLGAGQTKTEFD--GIYEDKKDTIGNAGVGAFYRLNDALSLRTEARGTYDFDEKY 172
Cdd:pfam13505  98 ---SDSLLPYGGAGYGYSKLEGDynGVSDSGTDFGFGYGAGVEYALTDHLAVRAEYRYTDIKSGGD 160
OMP_myx_plus TIGR04565
outer membrane beta-barrel protein; Members of this family are outer membrane beta-barrel ...
 44-163 6.26e-04

outer membrane beta-barrel protein; Members of this family are outer membrane beta-barrel proteins, as inferred by distant homologies to other families (e.g. pfam13505) and by the concentration of aromatic residues, especially Phe, in the OMP signal region, which is flush with the C-terminus in some members, but followed by a few residues in others. Members have variable insertions and deletions, affecting scores, so this model does not cleanly separate all members from all non-members. Members are common in the Myxococcales, with five occurring in Myxococcus xanthus DK 1622.


Pssm-ID: 275358  Cd Length: 157  Bit Score: 39.97  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429   44 LTSHAELQDDLFVGAALGVELTPWLGFEAEYNQVKGDL-------DGTGVAGAEYKQKtvagNFYATSDL---------- 106
Cdd:TIGR04565   3 VLSIEDFGSTYVFGLRLGYHLTEDWALEARYGYATAGLtsyerlsGGAPLLTPDDRRD----LSYYGLSLgwnpiygklf 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 496863429  107 ITKNYDSKFKPYVLLGAGqtKTEFDGiyedKKDTIGNAGVGAFYRLNDALSLRTEAR 163
Cdd:TIGR04565  79 LGDDKAFNFDLYLLAGAG--NTDFAG----ESHFTVNLGAGYRFFLTDWLALRLDVR 129
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 220-322 6.45e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 141.54  E-value: 6.45e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 220 ELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYnVDASRLSTQ 299
Cdd:cd07185    1 LITIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKG-VDASRITAV 79

                         90       100
                 ....*....|....*....|...
gi 496863429 300 GFAWDQPIADNKTKEGRAMNRRV 322
Cdd:cd07185   80 GYGESRPIASNDTEEGRAKNRRV 102
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 36-322 2.29e-38

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 138.38  E-value: 2.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  36 DSDHNNDKLTSHAELQDDLFVGAALGVELTPWLGFEAEYNQVKGDLDGTGVAGAEYKQKTVAGNFYATSDLITKNYDSKF 115
Cdd:COG2885    2 SEAALGASALAIDAAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSAT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 116 KPYVLLGAGQTKTEFDGIYEDKKDTIGNAGVGAFYRLNDALSLRTEARGTYDFDEKYWRYTALAGLNVVLGGHLKPAAPV 195
Cdd:COG2885   82 AAAGAAALLVLLAALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALD 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 196 VEVAPVEPTPVAPQPQELTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSL 275
Cdd:COG2885  162 AAAKAEAAAAAAALLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSE 241

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 496863429 276 ARANSVKSALVnEYNVDASRLSTQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:COG2885  242 RRAEAVKDYLV-SKGIPASRITAVGYGESRPVASNDTEEGRAKNRRV 287
PRK10510 PRK10510
OmpA family lipoprotein;
217-327 8.57e-27

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 105.34  E-value: 8.57e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 217 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEyNVDASRL 296
Cdd:PRK10510 108 LNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQ-GVDASRI 186

                         90       100       110
                 ....*....|....*....|....*....|.
gi 496863429 297 STQGFAWDQPIADNKTKEGRAMNRRVFATIT 327
Cdd:PRK10510 187 RTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
MotB COG1360
Flagellar motor protein MotB [Cell motility];
222-322 1.05e-26

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 103.77  E-value: 1.05e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATaRIEGHTDN----TGPRKLNERLSLARANSVKSALVnEYNVDASRLS 297
Cdd:COG1360   60 RVLFDSGSAELTPEGRELLDKIAAVLAEVPNRI-RVEGHTDNvpisTARFPSNWELSAARAAAVVRYLI-EGGVPPERLS 137

                         90       100
                 ....*....|....*....|....*
gi 496863429 298 TQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:COG1360  138 AVGYGDTRPLAPNDTPEGRARNRRV 162
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 225-322 9.72e-23

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 91.98  E-value: 9.72e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  225 FDTNKSNIKDQYKPEIAKVAEKLTEYPNAtARIEGHTDN----TGPRKLNERLSLARANSVKSALVnEYNVDASRLSTQG 300
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAVPGR-ITVVGHTDNvpirTARFPSNWHLSEARAKAVADVLA-QAGGPAGRVRAEG 111

                          90       100
                  ....*....|....*....|..
gi 496863429  301 FAWDQPIADNKTKEGRAMNRRV 322
Cdd:TIGR03350 112 RGDSEPIASNATAAGRARNRRV 133
PRK09967 PRK09967
OmpA family protein;
217-327 8.96e-22

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 90.42  E-value: 8.96e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 217 LNMELRVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRL 296
Cdd:PRK09967  48 LGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNL 127

                         90       100       110
                 ....*....|....*....|....*....|.
gi 496863429 297 STQGFAWDQPIADNKTKEGRAMNRRVFATIT 327
Cdd:PRK09967 128 TTQGLGKKYPIASNKTAQGRAENRRVAVVIT 158
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 225-319 3.18e-20

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 83.95  E-value: 3.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  225 FDTNKSNIKDQYKPEIAKVAEKLTEYPN-ATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYnVDASRLSTQGFAW 303
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFG-VPPSRISVVGYGA 79

                          90
                  ....*....|....*.
gi 496863429  304 DQPIADNKTKEGRAMN 319
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
PRK07033 PRK07033
DotU family type VI secretion system protein;
173-338 6.22e-18

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 84.33  E-value: 6.22e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 173 WRYTALA---------GLNVVLGGHLKP------AAPVVEVAPVEPTPVAPQPQELTEDLNMELRV-------------- 223
Cdd:PRK07033 231 WVCVALAlllalllfiGLRWRLADRSDPvfaaiyALRLPVVQIARPAPQPPPAPRLAKFLEPEIRAglvavrdeadrsvv 310

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 224 ------FFDTNKSNIKDQYKPEIAKVAEKLTEYPNATaRIEGHTDNTGPRKL----NERLSLARANSVKSALVNEYnVDA 293
Cdd:PRK07033 311 tlrgdgLFASASTSVRDRYQPVLARVADALNQVKGNV-LVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARL-GQP 388

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 496863429 294 SRLSTQGFAWDQPIADNKTKEGRAMNRRVfaTItgsrTVVVQPGQ 338
Cdd:PRK07033 389 ERVTAEGRGDSDPVAPNDSAENRARNRRV--EI----TLLVAPGS 427
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 223-334 2.26e-17

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 80.83  E-value: 2.26e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 223 VFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATaRIEGHTDNTGPRKL----NERLSLARANSVkSALVNEYNVDASRLST 298
Cdd:PRK09038 135 LLFGSGDAMLSDQAFAILEKVAEVLKPAPNPI-HVEGFTDNVPIATAqfpsNWELSAARAASV-VRLLADDGVAPSRLAA 212

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 496863429 299 QGFAWDQPIADNKTKEGRAMNRRVFATITGSRTVVV 334
Cdd:PRK09038 213 VGYGEFQPVADNDTAEGRARNRRVVLVILRNLDVRR 248
PRK06925 PRK06925
flagellar motor protein MotB;
222-322 3.11e-16

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 76.73  E-value: 3.11e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 222 RVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNaTARIEGHTDNtgpRKL-------NERLSLARANSVKSALVNEYNVDAS 294
Cdd:PRK06925 119 AVLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDS---RPIstyrypsNWELSAARASSVIRYFTSKEKLDSS 194

                         90       100
                 ....*....|....*....|....*...
gi 496863429 295 RLSTQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:PRK06925 195 RFIAVGYADTKPVVPNTTEENMQENRRV 222
motB PRK08944
flagellar motor protein MotB; Reviewed
 235-332 3.51e-15

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 75.05  E-value: 3.51e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 235 QYKPEIAKVAEKLTEYPnATARIEGHTDNTGPRklNER------LSLARANSVKSALVNEYNVDASRLSTQGFAWDQPIA 308
Cdd:PRK08944 193 KFKPVVRKIGELLKDVP-GIITVSGHTDNVPIS--SELyrsnwdLSSARAVAVAHELLKVKGFDPQRLKVVGMADTQPLV 269

                         90       100
                 ....*....|....*....|....
gi 496863429 309 DNKTKEGRAMNRRVFATITGSRTV 332
Cdd:PRK08944 270 PNDTAENRARNRRVEIIIEQGKAK 293
motB PRK06667
flagellar motor protein MotB; Validated
 223-327 6.45e-14

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 70.59  E-value: 6.45e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 223 VFFDTNKSNIK-DQYKPEIAKVAEKLTEYPNAT--ARIEGHTDNT-----GPRKLNERLSLARANSVKSALVNEYNVDAS 294
Cdd:PRK06667 127 AFFYPGSAEVKlEENRETLQKIASFIGFLDLAGrnFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDQSES 206

                         90       100       110
                 ....*....|....*....|....*....|...
gi 496863429 295 RLSTQGFAWDQPIADNKTKEGRAMNRRVFATIT 327
Cdd:PRK06667 207 WFQVSGFAGSRPLATEDTPEGRAYNRRIDIVIL 239
PRK09039 PRK09039
peptidoglycan -binding protein;
223-322 2.12e-13

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 69.99  E-value: 2.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 223 VFFDTNKSNIKDQYKPEIAKVAEKLTE----YP---NATARIEGHTDN-----TGPRKLNERLSLARANSVKSALVNEyN 290
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEIAKLAAALIElakeIPpeiNWVLRVDGHTDNvplsgTGRFRDNWELSSARAISVVKFLIAL-G 304

                         90       100       110
                 ....*....|....*....|....*....|..
gi 496863429 291 VDASRLSTQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:PRK09039 305 VPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
motB PRK07734
flagellar motor protein MotB; Reviewed
 223-322 4.05e-13

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 68.23  E-value: 4.05e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 223 VFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPR----KLNERLSLARANSVKSALVNEYNVDASRLST 298
Cdd:PRK07734 144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNVPIAnaqfASNWELSVMRAVNFMQVLLENKELDPEKFSA 223

                         90       100
                 ....*....|....*....|....
gi 496863429 299 QGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:PRK07734 224 KGYGEYKPIASNDTAEGRAKNRRV 247
motB PRK08457
flagellar motor protein MotB; Reviewed
 190-322 2.14e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 66.28  E-value: 2.14e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 190 KPAAPVVEVAPVEPTPVAPQPQELTED-----------------------------LNMELRVFFDTNKSNIKDQ----Y 236
Cdd:PRK08457  62 PEVKQPVKVIPPDSGDAEEEMDELKSLkasqntqqetierrkgeggaldqidngiaLKLPSKLLFENGSAEIINAdmmdY 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 237 KPEIAKVAEKLTeyPNATARIEGHTDNTGPRKL----NERLSLARANSVKSALVnEYNVDASRLSTQGFAWDQPIADNKT 312
Cdd:PRK08457 142 LKRIAKIITKLP--KQVKINVRGYTDNSPLNKSrykdHYELAAARAYNVMKVLI-QYGINPNRLSFSSYGSNNPIAPNDS 218

                        170
                 ....*....|
gi 496863429 313 KEGRAMNRRV 322
Cdd:PRK08457 219 LENRLKNNRV 228
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 223-322 3.09e-11

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 62.39  E-value: 3.09e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 223 VFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATArIEGHTDNTGPRKL----NERLSLARANSVKSALVNEYNVDASRLST 298
Cdd:PRK06742 117 LIFDTGDANVKPEAKEIISQLVGFFQSVPNPIV-VEGHTDSRPIHNDkfpsNWELSSARAANMIHHLIEVYNVDDKRLAA 195

                         90       100
                 ....*....|....*....|....
gi 496863429 299 QGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:PRK06742 196 VGYADTKPVVPNDSPQNWEKNRRV 219
PRK08126 PRK08126
hypothetical protein; Provisional
 225-327 3.33e-11

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 63.94  E-value: 3.33e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 225 FDTNKSNIKDQYKPEIAKVAEKLTEYPNATArIEGHTDNTGPRKL----NERLSLARANSVKSALVNEyNVDASRLSTQG 300
Cdd:PRK08126 327 FVPGQATVNPAMGPLIAKIAREIARVGGKVT-VTGHTDNQPIRSAqfasNLVLSEKRAAQVAQMLQSA-GVPASRLEAVG 404

                         90       100
                 ....*....|....*....|....*..
gi 496863429 301 FAWDQPIADNKTKEGRAMNRRVFATIT 327
Cdd:PRK08126 405 KGDAQPVADNRTPQGRAQNRRVEITVA 431
PRK10808 PRK10808
outer membrane protein A; Reviewed
 30-338 2.63e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 60.86  E-value: 2.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  30 VGYTWQDSDHNNDKltshaelqDDLFVGAALGVELTPWLGFEAEYNQV-----KGDLDgTGVAGAEYKQKTVAGNFYATS 104
Cdd:PRK10808  42 TGYGFINNNGPTHK--------NQLGAGAFGGYQANPYLGFEMGYDWLgrmpyKGDVN-NGAFKAQGVQLTAKLGYPITD 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 105 DLitknydskfKPYVLLGAG----QTKTEFDGIYEDKKDTIGN--AGVGAFYRLNDALSLRTEARGTY---DFDEKYWRY 175
Cdd:PRK10808 113 DL---------DVYTRLGGMvwraDTKSNVPGARGKDHDTGVSpvFAGGVEYAITKNWATRLEYQWTNnigDADTVGARP 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 176 -TALAGLNVVLGGHLKPAAPVVEVAPveptpvAPQPQELTEDLNMELRVFFDTNKSNIK-------DQYKPEIAKVAEKl 247
Cdd:PRK10808 184 dNGMLSVGVSYRFGQEEAAPVVAPAP------APAPVVQTKHFTLKSDVLFNFNKATLKpegqqalDQLYSQLSNLDPK- 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 248 teypNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEyNVDASRLSTQGFAWDQPIADNK--TKEGR-------AM 318
Cdd:PRK10808 257 ----DGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSK-GIPADKISARGMGKSNPVTGNTcdNVKPRaalidclAP 331

                        330       340
                 ....*....|....*....|
gi 496863429 319 NRRVFATITGSRTVVVQPGQ 338
Cdd:PRK10808 332 DRRVEIEVKGIKDVVTQPQA 351
OMP_b-brl pfam13505
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ...
 30-172 6.62e-10

Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.


Pssm-ID: 463903 [Multi-domain]  Cd Length: 175  Bit Score: 57.41  E-value: 6.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429   30 VGYTWQDSDHNNDKLTshaelqDDLFVGAALGVELTPWLGFEAEYN-QVKGDLDGTGVAGAEYKQKTVAGNFYATSDLit 108
Cdd:pfam13505  26 GGLGNANFSFDGDGTD------SGGGFGVGAGYDFNDYLGVEGELGyGSDDDYSGGGNTDANIRSLSIGVNLGYRFPL-- 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 496863429  109 knyDSKFKPYVLLGAGQTKTEFD--GIYEDKKDTIGNAGVGAFYRLNDALSLRTEARGTYDFDEKY 172
Cdd:pfam13505  98 ---SDSLLPYGGAGYGYSKLEGDynGVSDSGTDFGFGYGAGVEYALTDHLAVRAEYRYTDIKSGGD 160
PRK09040 PRK09040
hypothetical protein; Provisional
 234-322 1.66e-06

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 48.09  E-value: 1.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 234 DQYKPE----IAKVAEKLTEYPNATARI---EGHTDNTGPRKLNER------LSLARANSVKSALVNEyNVDASRLSTQG 300
Cdd:PRK09040  97 DQLQPEgrelLKSLAGPLAAYLRARDEIlmvSGFTDDQPVRAGNRRfadnweLSAQRALTVTRALIDA-GVPASSVFAAA 175

                         90       100
                 ....*....|....*....|..
gi 496863429 301 FAWDQPIADNKTKEGRAMNRRV 322
Cdd:PRK09040 176 FGSEQPVASNADDEGRAKNRRV 197
PRK07034 PRK07034
hypothetical protein; Provisional
 225-322 3.62e-06

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 48.63  E-value: 3.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 225 FDTNKSNIKDQY--KPEIAKVAEKLTEYPNATARIeGHTDNTGPRKL----NERLSLARANSVKSALVNEYNVDAS---R 295
Cdd:PRK07034 398 FRTGEATLSEEFinKKNIERLGLALAPWPGDIEVI-GHTDNKPFRSTsgnnNLKLSAARASVVADKLRESTQINEThqrE 476

                         90       100
                 ....*....|....*....|....*..
gi 496863429 296 LSTQGFAWDQPIADNKTKEGRAMNRRV 322
Cdd:PRK07034 477 ISAIGRGESDPLADNATEEGRKRNRRV 503
LomR COG3637
Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];
54-188 7.69e-05

Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442854 [Multi-domain]  Cd Length: 154  Bit Score: 42.27  E-value: 7.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429  54 LFVGAALGVEL-------TPWLGFEAEYN--QVKGDLDGTGVaGAEYKQKTVAGNFYatsdlitknYD--SKFKPYVLLG 122
Cdd:COG3637    5 LLAALAAGVQAgynfqfdNFVLGVEGDYSysDIDGDSSGTTG-SGDLDYLSLRARAG---------YDfnDRFLPYATAG 74

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 496863429 123 AGQTKTEFDGIY-------EDKKDTIGNAGVGAFYRLNDALSLRTEARGTyDFDEKywRYTALAGLNVVLGGH 188
Cdd:COG3637   75 VAYARVKVTGNTgsgtsgsDSDTRFGWTVGAGVEYALTDNWSLRLEYRYT-DLGDA--DFDGGGSVDVDLDSH 144
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
209-321 2.31e-04

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 41.39  E-value: 2.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429 209 QPQELTEDlNMelrVFFDTNKSNIKDQYKPEIAKVAEKLTEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNE 288
Cdd:PRK10802  61 QMQQLQQN-NI---VYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGK 136

                         90       100       110
                 ....*....|....*....|....*....|...
gi 496863429 289 yNVDASRLSTQGFAWDQPIADNKTKEGRAMNRR 321
Cdd:PRK10802 137 -GVSADQISIVSYGKEKPAVLGHDEAAYAKNRR 168
OMP_myx_plus TIGR04565
outer membrane beta-barrel protein; Members of this family are outer membrane beta-barrel ...
 44-163 6.26e-04

outer membrane beta-barrel protein; Members of this family are outer membrane beta-barrel proteins, as inferred by distant homologies to other families (e.g. pfam13505) and by the concentration of aromatic residues, especially Phe, in the OMP signal region, which is flush with the C-terminus in some members, but followed by a few residues in others. Members have variable insertions and deletions, affecting scores, so this model does not cleanly separate all members from all non-members. Members are common in the Myxococcales, with five occurring in Myxococcus xanthus DK 1622.


Pssm-ID: 275358  Cd Length: 157  Bit Score: 39.97  E-value: 6.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 496863429   44 LTSHAELQDDLFVGAALGVELTPWLGFEAEYNQVKGDL-------DGTGVAGAEYKQKtvagNFYATSDL---------- 106
Cdd:TIGR04565   3 VLSIEDFGSTYVFGLRLGYHLTEDWALEARYGYATAGLtsyerlsGGAPLLTPDDRRD----LSYYGLSLgwnpiygklf 78

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 496863429  107 ITKNYDSKFKPYVLLGAGqtKTEFDGiyedKKDTIGNAGVGAFYRLNDALSLRTEAR 163
Cdd:TIGR04565  79 LGDDKAFNFDLYLLAGAG--NTDFAG----ESHFTVNLGAGYRFFLTDWLALRLDVR 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH