|
Name |
Accession |
Description |
Interval |
E-value |
| PpsR-CrtJ |
TIGR02040 |
transcriptional regulator PpsR; This model represents the transcriptional regulator PpsR which ... |
18-459 |
0e+00 |
|
transcriptional regulator PpsR; This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954). [Energy metabolism, Photosynthesis, Regulatory functions, DNA interactions]
Pssm-ID: 273940 [Multi-domain] Cd Length: 442 Bit Score: 632.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 18 LVATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLR-SEGLEPGRGSVAVELNHIDPRSF 96
Cdd:TIGR02040 1 LLATAADVTLLLDAEGVVREVAANPHHPSFEQLSEWEGRRWEEIVTAESVEKFELRlSEALRTGRGAVRVELNHIDPSSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 97 EFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLN 176
Cdd:TIGR02040 81 ELPMRFILVRLGADRGVLALGRDLRAVAELQQQLVAAQQAMERDYWTLREMETRYRVVLEVSSDAVLLVDMSTGRIVEAN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 177 SAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPA 256
Cdd:TIGR02040 161 SAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPVRILLRRSQKRLLVVVSVFRQDGESLFLCQLSPA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 257 DATQPVGDELSENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDSSSLAAIRGRSIADFLARGSVDLRVLIDSVRRTG 336
Cdd:TIGR02040 241 GATQPVGDELSENLARLYHEAPDAIVFSDADGTIRGANEAFLELTDSSSLEAVRGRTLDRWLGRGGVDLRVLLSNVRRTG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 337 QLRLYATRLTTDFAGQIAAEISATWLDDRERPLLVLVVRDTSRADTMRRpVPATGVIDEPARNVMELVGNSTLKDIVAET 416
Cdd:TIGR02040 321 QVRLYATTLTGEFGAQTEVEISAAWVDQGERPLIVLVIRDISRRLTMRD-VPATGVLPRSARQLTELVGRSPLKDLVRET 399
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 497251458 417 TDVVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGL 459
Cdd:TIGR02040 400 TDVVEQLCIEAALELTRDNRASAAEILGLSRQSLYVKLRRYGL 442
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
380-460 |
6.82e-18 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 77.93 E-value: 6.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 380 ADTMRRPVPATGVIDEPARNVMELVGNSTLKDIVAETTDVVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGL 459
Cdd:COG2901 3 ASDTASSPPLRDCVRQALENYFADLDGEPPSDLYDMVLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
.
gi 497251458 460 L 460
Cdd:COG2901 83 L 83
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
420-456 |
1.91e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 50.08 E-value: 1.91e-08
10 20 30
....*....|....*....|....*....|....*..
gi 497251458 420 VEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRK 456
Cdd:pfam02954 4 VEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
150-214 |
4.44e-06 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 44.31 E-value: 4.44e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 497251458 150 RYRVVLDVSRDPMVLVSMsTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNL 214
Cdd:smart00091 2 RLRAILESLPDGIFVLDL-DGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRL 65
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
279-376 |
4.12e-05 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 42.62 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 279 DGIVFSDADGTIRGANEAFLNMTDsSSLAAIRGRSIADFLARGSVD-LRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEI 357
Cdd:cd00130 3 DGVIVLDLDGRILYANPAAEQLLG-YSPEELIGKSLLDLIHPEDREeLRERLENLLSGGEPVTLEVRLRRKDGSVIWVLV 81
|
90 100
....*....|....*....|.
gi 497251458 358 SATWLDDR--ERPLLVLVVRD 376
Cdd:cd00130 82 SLTPIRDEggEVIGLLGVVRD 102
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
414-460 |
8.35e-04 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 38.51 E-value: 8.35e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 497251458 414 AETTDV-------VEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGLL 460
Cdd:PRK00430 42 QDVNDLyelvlaeVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGMN 95
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PpsR-CrtJ |
TIGR02040 |
transcriptional regulator PpsR; This model represents the transcriptional regulator PpsR which ... |
18-459 |
0e+00 |
|
transcriptional regulator PpsR; This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954). [Energy metabolism, Photosynthesis, Regulatory functions, DNA interactions]
Pssm-ID: 273940 [Multi-domain] Cd Length: 442 Bit Score: 632.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 18 LVATAADISLLVSQEGVVREVMANPHHPSFGQLSEWEGRPLEEVLTAESVAKFRLR-SEGLEPGRGSVAVELNHIDPRSF 96
Cdd:TIGR02040 1 LLATAADVTLLLDAEGVVREVAANPHHPSFEQLSEWEGRRWEEIVTAESVEKFELRlSEALRTGRGAVRVELNHIDPSSF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 97 EFPIRYILHRLPADRSILMLGRDLRPIAEVQQQLVAAQLAMERDYETQREMETRYRVVLDVSRDPMVLVSMSTGRIVDLN 176
Cdd:TIGR02040 81 ELPMRFILVRLGADRGVLALGRDLRAVAELQQQLVAAQQAMERDYWTLREMETRYRVVLEVSSDAVLLVDMSTGRIVEAN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 177 SAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEVLARRSQKRLLVVPRVFRAAGERLLLCQIDPA 256
Cdd:TIGR02040 161 SAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPVRILLRRSQKRLLVVVSVFRQDGESLFLCQLSPA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 257 DATQPVGDELSENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDSSSLAAIRGRSIADFLARGSVDLRVLIDSVRRTG 336
Cdd:TIGR02040 241 GATQPVGDELSENLARLYHEAPDAIVFSDADGTIRGANEAFLELTDSSSLEAVRGRTLDRWLGRGGVDLRVLLSNVRRTG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 337 QLRLYATRLTTDFAGQIAAEISATWLDDRERPLLVLVVRDTSRADTMRRpVPATGVIDEPARNVMELVGNSTLKDIVAET 416
Cdd:TIGR02040 321 QVRLYATTLTGEFGAQTEVEISAAWVDQGERPLIVLVIRDISRRLTMRD-VPATGVLPRSARQLTELVGRSPLKDLVRET 399
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 497251458 417 TDVVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGL 459
Cdd:TIGR02040 400 TDVVEQLCIEAALELTRDNRASAAEILGLSRQSLYVKLRRYGL 442
|
|
| Fis |
COG2901 |
DNA-binding protein Fis (factor for inversion stimulation) [Transcription]; |
380-460 |
6.82e-18 |
|
DNA-binding protein Fis (factor for inversion stimulation) [Transcription];
Pssm-ID: 442146 [Multi-domain] Cd Length: 83 Bit Score: 77.93 E-value: 6.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 380 ADTMRRPVPATGVIDEPARNVMELVGNSTLKDIVAETTDVVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGL 459
Cdd:COG2901 3 ASDTASSPPLRDCVRQALENYFADLDGEPPSDLYDMVLAEVEKPLLETVLEHTRGNQSRAAEMLGINRNTLRKKLKQYGL 82
|
.
gi 497251458 460 L 460
Cdd:COG2901 83 L 83
|
|
| HTH_8 |
pfam02954 |
Bacterial regulatory protein, Fis family; |
420-456 |
1.91e-08 |
|
Bacterial regulatory protein, Fis family;
Pssm-ID: 427077 [Multi-domain] Cd Length: 40 Bit Score: 50.08 E-value: 1.91e-08
10 20 30
....*....|....*....|....*....|....*..
gi 497251458 420 VEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRK 456
Cdd:pfam02954 4 VEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
279-385 |
2.77e-08 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 55.62 E-value: 2.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 279 DGIVFSDADGTIRGANEAFLNMTDSSSlAAIRGRSIADFLARGSVDLRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEIS 358
Cdd:COG3852 18 DAVIVLDADGRITYVNPAAERLLGLSA-EELLGRPLAELFPEDSPLRELLERALAEGQPVTEREVTLRRKDGEERPVDVS 96
|
90 100
....*....|....*....|....*...
gi 497251458 359 ATWLDDRE-RPLLVLVVRDTSRADTMRR 385
Cdd:COG3852 97 VSPLRDAEgEGGVLLVLRDITERKRLER 124
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
405-459 |
1.08e-07 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 54.01 E-value: 1.08e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 497251458 405 GNSTLKDIVAEttdvVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGL 459
Cdd:COG3829 397 EEGSLKEALEE----VEKELIEEALEKTGGNKSKAAKALGISRSTLYRKLKKYGI 447
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
398-458 |
1.31e-06 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 50.35 E-value: 1.31e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 497251458 398 RNVMELV-----GNSTLKDIVAETTDVVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFG 458
Cdd:COG2204 353 ENVIERAviladGEVITAEDLPEALEEVERELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
150-214 |
4.44e-06 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 44.31 E-value: 4.44e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 497251458 150 RYRVVLDVSRDPMVLVSMsTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNL 214
Cdd:smart00091 2 RLRAILESLPDGIFVLDL-DGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRERVQEALQRL 65
|
|
| PAS |
COG2202 |
PAS domain [Signal transduction mechanisms]; |
139-376 |
3.70e-05 |
|
PAS domain [Signal transduction mechanisms];
Pssm-ID: 441804 [Multi-domain] Cd Length: 258 Bit Score: 45.40 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 139 RDYETQREMETRYRVVLDVSRDPMVLVSMsTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATE 218
Cdd:COG2202 1 TAEEALEESERRLRALVESSPDAIIITDL-DGRILYVNPAFERLTGYSAEELLGKTLRDLLPPEDDDEFLELLRAALAGG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 219 SAAPVEVLARRSQKRL----LVVPRVFRAAGE--RLLLCQID------PADATQpvgdELSENLARLYHEGVDGIVFSDA 286
Cdd:COG2202 80 GVWRGELRNRRKDGSLfwveLSISPVRDEDGEitGFVGIARDiterkrAEEALR----ESEERLRLLVENAPDGIFVLDL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 287 DGTIRGANEAFLNMTDSSSlAAIRGRSIADFLARGSVDLRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEISAT---WLD 363
Cdd:COG2202 156 DGRILYVNPAAEELLGYSP-EELLGKSLLDLLHPEDRERLLELLRRLLEGGRESYELELRLKDGDGRWVWVEASavpLRD 234
|
250
....*....|...
gi 497251458 364 DRERPLLVLVVRD 376
Cdd:COG2202 235 GGEVIGVLGIVRD 247
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
279-376 |
4.12e-05 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 42.62 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 279 DGIVFSDADGTIRGANEAFLNMTDsSSLAAIRGRSIADFLARGSVD-LRVLIDSVRRTGQLRLYATRLTTDFAGQIAAEI 357
Cdd:cd00130 3 DGVIVLDLDGRILYANPAAEQLLG-YSPEELIGKSLLDLIHPEDREeLRERLENLLSGGEPVTLEVRLRRKDGSVIWVLV 81
|
90 100
....*....|....*....|.
gi 497251458 358 SATWLDDR--ERPLLVLVVRD 376
Cdd:cd00130 82 SLTPIRDEggEVIGLLGVVRD 102
|
|
| KinE |
COG5809 |
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome ... |
16-225 |
6.48e-05 |
|
Sporulation sensor histidine kinase E [Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 444511 [Multi-domain] Cd Length: 489 Bit Score: 45.35 E-value: 6.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 16 RDLVATAADISLLVSQEGVVreVMANPhhpSFGQLSEWE-----GRPLEEVLTAESVAKFRLRSEGLEPG--RGSVAVEL 88
Cdd:COG5809 18 RSLFENAPDAILILDLEGKI--LKVNP---AAERIFGYTedellGTNILDFLHPDDEKELREILKLLKEGesRDELEFEL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 89 NHIDPRSFEFPIRYILHRLPADRSILMLGrdlrpiaevQQQLVAAQLAMERDYetqREMETRYRVVLDVSRDPMVLVSMs 168
Cdd:COG5809 93 RHKNGKRLEFSSKLSPIFDQNGDIEGMLA---------ISRDITERKRMEEAL---RESEEKFRLIFNHSPDGIIVTDL- 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 497251458 169 TGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEV 225
Cdd:COG5809 160 DGRIIYANPAACKLLGISIEELIGKSILELIHSDDQENVAAFISQLLKDGGIAQGEV 216
|
|
| PAS |
cd00130 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
160-253 |
1.76e-04 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Pssm-ID: 238075 [Multi-domain] Cd Length: 103 Bit Score: 40.69 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 160 DPMVLVSMSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQEFEGRRRGEFMETMTNLAATESAAPVEV-LARRSQKRLLVVP 238
Cdd:cd00130 2 PDGVIVLDLDGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVrLRRKDGSVIWVLV 81
|
90
....*....|....*
gi 497251458 239 RVFRAAGERLLLCQI 253
Cdd:cd00130 82 SLTPIRDEGGEVIGL 96
|
|
| fis |
PRK00430 |
DNA-binding transcriptional regulator Fis; |
414-460 |
8.35e-04 |
|
DNA-binding transcriptional regulator Fis;
Pssm-ID: 179020 [Multi-domain] Cd Length: 95 Bit Score: 38.51 E-value: 8.35e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 497251458 414 AETTDV-------VEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGLL 460
Cdd:PRK00430 42 QDVNDLyelvlaeVEAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKYGMN 95
|
|
| PAS |
smart00091 |
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising ... |
268-337 |
1.18e-03 |
|
PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels.
Pssm-ID: 214512 Cd Length: 67 Bit Score: 37.38 E-value: 1.18e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497251458 268 ENLARLYHEGVDGIVFSDADGTIRGANEAFLNMTDsSSLAAIRGRSIADFLARGsvDLRVLIDSVRRTGQ 337
Cdd:smart00091 1 ERLRAILESLPDGIFVLDLDGRILYANPAAEELLG-YSPEELIGKSLLELIHPE--DRERVQEALQRLLS 67
|
|
| NtrB |
COG3852 |
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms]; |
145-197 |
3.32e-03 |
|
Signal transduction histidine kinase NtrB, nitrogen specific [Signal transduction mechanisms];
Pssm-ID: 443061 [Multi-domain] Cd Length: 361 Bit Score: 39.44 E-value: 3.32e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 497251458 145 REMETRYRVVLDVSRDPMVLVSmSTGRIVDLNSAAGLLLGGVRQDLLGAAIAQ 197
Cdd:COG3852 3 RESEELLRAILDSLPDAVIVLD-ADGRITYVNPAAERLLGLSAEELLGRPLAE 54
|
|
| PRK01905 |
PRK01905 |
Fis family transcriptional regulator; |
420-460 |
7.54e-03 |
|
Fis family transcriptional regulator;
Pssm-ID: 179348 [Multi-domain] Cd Length: 77 Bit Score: 35.17 E-value: 7.54e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 497251458 420 VEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGLL 460
Cdd:PRK01905 37 VEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQHGLL 77
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
409-459 |
8.31e-03 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 38.29 E-value: 8.31e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 497251458 409 LKDIVAETTDVVEKMCIETALELTRNNRVAAAEMLSLSRQSLYVKLRKFGL 459
Cdd:COG3604 287 LAPGSREALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGI 337
|
|
| |
