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Conserved domains on  [gi|497253179|ref|WP_009567396|]
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MULTISPECIES: DUF6615 family protein [Acidithiobacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF6615 super family cl48480
Family of unknown function (DUF6615); This family of proteins is functionally uncharacterized. ...
 2-127 2.86e-09

Family of unknown function (DUF6615); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 301 and 317 amino acids in length. These proteins contain a conserved sequence motif FREE that may be functionally important.


The actual alignment was detected with superfamily member pfam20320:

Pssm-ID: 466470  Cd Length: 289  Bit Score: 56.35  E-value: 2.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497253179    2 TLCKISQKKASWIWSTLRNARRYNSKIGEESITDFFVLELKKASKGAYFIDsftRPKEKITGADWELWFTGP-TKKWIGL 80
Cdd:pfam20320   1 MLCDFASRFPAMVANFLDRERKLKRRFREETVTDLLMAGLAALPGPEVVVD---FPDEKRTGADMDLVFVDPeTGDFFRL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 497253179   81 RVQAKVISINGK-----RYAQL-HYKRKDGTYQIDQLV--ADAKKHKAIPLYCLY 127
Cdd:pfam20320  78 RIQAKRLNGHGTywtrhSYRELlHRVGSTKGLQSDTLVdtAGTSPDSTYPLYLFY 132
 
Name Accession Description Interval E-value
DUF6615 pfam20320
Family of unknown function (DUF6615); This family of proteins is functionally uncharacterized. ...
 2-127 2.86e-09

Family of unknown function (DUF6615); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 301 and 317 amino acids in length. These proteins contain a conserved sequence motif FREE that may be functionally important.


Pssm-ID: 466470  Cd Length: 289  Bit Score: 56.35  E-value: 2.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497253179    2 TLCKISQKKASWIWSTLRNARRYNSKIGEESITDFFVLELKKASKGAYFIDsftRPKEKITGADWELWFTGP-TKKWIGL 80
Cdd:pfam20320   1 MLCDFASRFPAMVANFLDRERKLKRRFREETVTDLLMAGLAALPGPEVVVD---FPDEKRTGADMDLVFVDPeTGDFFRL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 497253179   81 RVQAKVISINGK-----RYAQL-HYKRKDGTYQIDQLV--ADAKKHKAIPLYCLY 127
Cdd:pfam20320  78 RIQAKRLNGHGTywtrhSYRELlHRVGSTKGLQSDTLVdtAGTSPDSTYPLYLFY 132
 
Name Accession Description Interval E-value
DUF6615 pfam20320
Family of unknown function (DUF6615); This family of proteins is functionally uncharacterized. ...
 2-127 2.86e-09

Family of unknown function (DUF6615); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 301 and 317 amino acids in length. These proteins contain a conserved sequence motif FREE that may be functionally important.


Pssm-ID: 466470  Cd Length: 289  Bit Score: 56.35  E-value: 2.86e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497253179    2 TLCKISQKKASWIWSTLRNARRYNSKIGEESITDFFVLELKKASKGAYFIDsftRPKEKITGADWELWFTGP-TKKWIGL 80
Cdd:pfam20320   1 MLCDFASRFPAMVANFLDRERKLKRRFREETVTDLLMAGLAALPGPEVVVD---FPDEKRTGADMDLVFVDPeTGDFFRL 77

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 497253179   81 RVQAKVISINGK-----RYAQL-HYKRKDGTYQIDQLV--ADAKKHKAIPLYCLY 127
Cdd:pfam20320  78 RIQAKRLNGHGTywtrhSYRELlHRVGSTKGLQSDTLVdtAGTSPDSTYPLYLFY 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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