NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|497340350|ref|WP_009654563|]
View 

MULTISPECIES: IS5/IS1182 family transposase, partial [Enterobacterales]

Protein Classification

transposase( domain architecture ID 1000886)

transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
IS5 super family cl34540
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-72 1.00e-28

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG3039:

Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 103.80  E-value: 1.00e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 497340350   1 MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNL 72
Cdd:COG3039    1 MKQQLFAADERYAKKKKQTRPLLFLEEMIDVVPWALLLDIIEPRYPKGKGGRPPYPLERMLRILFLQQWYNL 72
 
Name Accession Description Interval E-value
IS5 COG3039
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-72 1.00e-28

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 103.80  E-value: 1.00e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 497340350   1 MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNL 72
Cdd:COG3039    1 MKQQLFAADERYAKKKKQTRPLLFLEEMIDVVPWALLLDIIEPRYPKGKGGRPPYPLERMLRILFLQQWYNL 72
transpos_IS5_4 NF033581
IS5 family transposase;
24-72 4.49e-17

IS5 family transposase;


Pssm-ID: 468098 [Multi-domain]  Cd Length: 284  Bit Score: 72.35  E-value: 4.49e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 497340350  24 FLSRMEQILPWQNMTAVIEPFYPK-AGNGRRPYPLETMLRIHCMQHWYNL 72
Cdd:NF033581   1 RLFRRLSGVPWETFEALIEPLYPKrAGRGRPPYPPELMLRILLLQTLYYL 50
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
51-72 2.23e-05

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 37.86  E-value: 2.23e-05
                         10        20
                 ....*....|....*....|..
gi 497340350  51 GRRPYPLETMLRIHCMQHWYNL 72
Cdd:pfam05598  1 GRPAYPPEMMLKALLLQYLYGL 22
 
Name Accession Description Interval E-value
IS5 COG3039
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-72 1.00e-28

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 103.80  E-value: 1.00e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 497340350   1 MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNL 72
Cdd:COG3039    1 MKQQLFAADERYAKKKKQTRPLLFLEEMIDVVPWALLLDIIEPRYPKGKGGRPPYPLERMLRILFLQQWYNL 72
transpos_IS5_4 NF033581
IS5 family transposase;
24-72 4.49e-17

IS5 family transposase;


Pssm-ID: 468098 [Multi-domain]  Cd Length: 284  Bit Score: 72.35  E-value: 4.49e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 497340350  24 FLSRMEQILPWQNMTAVIEPFYPK-AGNGRRPYPLETMLRIHCMQHWYNL 72
Cdd:NF033581   1 RLFRRLSGVPWETFEALIEPLYPKrAGRGRPPYPPELMLRILLLQTLYYL 50
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
51-72 2.23e-05

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 37.86  E-value: 2.23e-05
                         10        20
                 ....*....|....*....|..
gi 497340350  51 GRRPYPLETMLRIHCMQHWYNL 72
Cdd:pfam05598  1 GRPAYPPEMMLKALLLQYLYGL 22
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH
HHS Vulnerability Disclosure