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Conserved domains on  [gi|497371425|ref|WP_009685638|]
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MULTISPECIES: tol-pal system YbgF family protein [Pseudomonas]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11448200)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes; similar to Schizosaccharomyces pombe mitochondrial pentatricopeptide repeat-containing protein 4

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 59-105 1.38e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.38e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 497371425  59 PEVSLLRGQCLERQALYVDAAQTYQYLIQQYPRNEYAYRAQARLQTL 105
Cdd:COG1729   67 PDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
 
Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 59-105 1.38e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.38e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 497371425  59 PEVSLLRGQCLERQALYVDAAQTYQYLIQQYPRNEYAYRAQARLQTL 105
Cdd:COG1729   67 PDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
 
Name Accession Description Interval E-value
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 59-105 1.38e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 1.38e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 497371425  59 PEVSLLRGQCLERQALYVDAAQTYQYLIQQYPRNEYAYRAQARLQTL 105
Cdd:COG1729   67 PDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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