MarR family winged helix-turn-helix transcriptional regulator [Clostridioides difficile]
MarR family winged helix-turn-helix transcriptional regulator( domain architecture ID 11448790)
MarR family winged helix-turn-helix (wHTH) transcriptional regulator similar to Bacillus thuringiensis DNA-binding transcriptional repressor TubR, a DNA-binding protein that is part of the type III plasmid partition system used to ensure correct segregation of the pBtoxis plasmid
List of domain hits
Name | Accession | Description | Interval | E-value | |||
MarR | COG1846 | DNA-binding transcriptional regulator, MarR family [Transcription]; |
26-151 | 2.45e-26 | |||
DNA-binding transcriptional regulator, MarR family [Transcription]; : Pssm-ID: 441451 [Multi-domain] Cd Length: 142 Bit Score: 96.58 E-value: 2.45e-26
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Name | Accession | Description | Interval | E-value | |||
MarR | COG1846 | DNA-binding transcriptional regulator, MarR family [Transcription]; |
26-151 | 2.45e-26 | |||
DNA-binding transcriptional regulator, MarR family [Transcription]; Pssm-ID: 441451 [Multi-domain] Cd Length: 142 Bit Score: 96.58 E-value: 2.45e-26
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HTH_MARR | smart00347 | helix_turn_helix multiple antibiotic resistance protein; |
46-141 | 1.24e-22 | |||
helix_turn_helix multiple antibiotic resistance protein; Pssm-ID: 197670 [Multi-domain] Cd Length: 101 Bit Score: 85.72 E-value: 1.24e-22
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MarR_2 | pfam12802 | MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ... |
46-104 | 6.23e-11 | |||
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif. Pssm-ID: 432797 [Multi-domain] Cd Length: 60 Bit Score: 54.52 E-value: 6.23e-11
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PRK03573 | PRK03573 | transcriptional regulator SlyA; Provisional |
63-153 | 2.37e-07 | |||
transcriptional regulator SlyA; Provisional Pssm-ID: 179596 Cd Length: 144 Bit Score: 47.31 E-value: 2.37e-07
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Name | Accession | Description | Interval | E-value | |||
MarR | COG1846 | DNA-binding transcriptional regulator, MarR family [Transcription]; |
26-151 | 2.45e-26 | |||
DNA-binding transcriptional regulator, MarR family [Transcription]; Pssm-ID: 441451 [Multi-domain] Cd Length: 142 Bit Score: 96.58 E-value: 2.45e-26
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HTH_MARR | smart00347 | helix_turn_helix multiple antibiotic resistance protein; |
46-141 | 1.24e-22 | |||
helix_turn_helix multiple antibiotic resistance protein; Pssm-ID: 197670 [Multi-domain] Cd Length: 101 Bit Score: 85.72 E-value: 1.24e-22
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MarR_2 | pfam12802 | MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ... |
46-104 | 6.23e-11 | |||
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif. Pssm-ID: 432797 [Multi-domain] Cd Length: 60 Bit Score: 54.52 E-value: 6.23e-11
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MarR | pfam01047 | MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a ... |
48-105 | 1.68e-09 | |||
MarR family; The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif. Pssm-ID: 426012 [Multi-domain] Cd Length: 59 Bit Score: 50.62 E-value: 1.68e-09
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PRK03573 | PRK03573 | transcriptional regulator SlyA; Provisional |
63-153 | 2.37e-07 | |||
transcriptional regulator SlyA; Provisional Pssm-ID: 179596 Cd Length: 144 Bit Score: 47.31 E-value: 2.37e-07
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B-block_TFIIIC | pfam04182 | B-block binding subunit of TFIIIC; Yeast transcription factor IIIC (TFIIIC) is a multi-subunit ... |
63-97 | 4.96e-03 | |||
B-block binding subunit of TFIIIC; Yeast transcription factor IIIC (TFIIIC) is a multi-subunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding. Pssm-ID: 367858 Cd Length: 75 Bit Score: 34.15 E-value: 4.96e-03
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Blast search parameters | ||||
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