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Conserved domains on  [gi|497580354|ref|WP_009894538|]
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HNH endonuclease signature motif containing protein [Clostridioides difficile]

Protein Classification

HNH endonuclease signature motif containing protein( domain architecture ID 10052677)

HNH endonuclease signature motif containing protein which may catalyze the hydrolysis of DNA

EC:  3.-.-.-
Gene Ontology:  GO:0004519|GO:0003676|GO:0008270

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HNHc cd00085
HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic ...
 34-80 4.02e-03

HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.


:

Pssm-ID: 238038 [Multi-domain]  Cd Length: 57  Bit Score: 34.37  E-value: 4.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 497580354  34 YFSNECKCVLCD---SVKKVSLHHKT-YRRIGAEELDDLIPLCNSCHYKVH 80
Cdd:cd00085    7 LLARDGLCPYCGkpgGTEGLEVDHIIpLSDGGNNDLDNLVLLCRKCHRKKH 57
 
Name Accession Description Interval E-value
HNHc cd00085
HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic ...
 34-80 4.02e-03

HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.


Pssm-ID: 238038 [Multi-domain]  Cd Length: 57  Bit Score: 34.37  E-value: 4.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 497580354  34 YFSNECKCVLCD---SVKKVSLHHKT-YRRIGAEELDDLIPLCNSCHYKVH 80
Cdd:cd00085    7 LLARDGLCPYCGkpgGTEGLEVDHIIpLSDGGNNDLDNLVLLCRKCHRKKH 57
 
Name Accession Description Interval E-value
HNHc cd00085
HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic ...
 34-80 4.02e-03

HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.


Pssm-ID: 238038 [Multi-domain]  Cd Length: 57  Bit Score: 34.37  E-value: 4.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 497580354  34 YFSNECKCVLCD---SVKKVSLHHKT-YRRIGAEELDDLIPLCNSCHYKVH 80
Cdd:cd00085    7 LLARDGLCPYCGkpgGTEGLEVDHIIpLSDGGNNDLDNLVLLCRKCHRKKH 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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