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Conserved domains on  [gi|497583903|ref|WP_009898087|]
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pentapeptide repeat-containing protein [Clostridioides difficile]

Protein Classification

pentapeptide repeat-containing protein( domain architecture ID 15193083)

pentapeptide repeat-containing protein (PRP) similar to PRP proteins that confer resistance, such as the resistance factor AlbG and the fluoroquinolone resistance proteins QnrB and MfpA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5758 pfam19062
Family of unknown function (DUF5758); This is a family of uncharacterized proteins of unknown ...
 133-237 6.48e-74

Family of unknown function (DUF5758); This is a family of uncharacterized proteins of unknown function found in viruses, as well as in bacteria. It is predicted to be a pentapeptide repeat-containing protein.


:

Pssm-ID: 436932  Cd Length: 105  Bit Score: 219.80  E-value: 6.48e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  133 FKLYCPETGAFIGYKKCFNFRMVQLLIPSDAKRVSATSNACRCDKAKVLSITSIDGKESFKSARAYADENFIYRVGETIV 212
Cdd:pfam19062   1 FRLYCPEEGAFIAYKKCFNGRIVQLLIPADAKRTSATTNSCRCDKAKVLSIKSFDGKESYDEAVSYVDENFVYRVGEWVY 80

                          90       100
                  ....*....|....*....|....*
gi 497583903  213 AEDFNENRWKESTTGIHFFLTREEA 237
Cdd:pfam19062  81 AKNFNPDRWLDSTGGIHFWMTREEA 105
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
29-124 4.13e-17

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


:

Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 76.13  E-value: 4.13e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  29 ADLKELRLENMDLRG---YCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSD 105
Cdd:COG1357   69 ADLSGANLTGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGAD 148

                         90
                 ....*....|....*....
gi 497583903 106 IRGANLENSNLEHATLNGV 124
Cdd:COG1357  149 LSGADLSGANLSGANLSGA 167
 
Name Accession Description Interval E-value
DUF5758 pfam19062
Family of unknown function (DUF5758); This is a family of uncharacterized proteins of unknown ...
 133-237 6.48e-74

Family of unknown function (DUF5758); This is a family of uncharacterized proteins of unknown function found in viruses, as well as in bacteria. It is predicted to be a pentapeptide repeat-containing protein.


Pssm-ID: 436932  Cd Length: 105  Bit Score: 219.80  E-value: 6.48e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  133 FKLYCPETGAFIGYKKCFNFRMVQLLIPSDAKRVSATSNACRCDKAKVLSITSIDGKESFKSARAYADENFIYRVGETIV 212
Cdd:pfam19062   1 FRLYCPEEGAFIAYKKCFNGRIVQLLIPADAKRTSATTNSCRCDKAKVLSIKSFDGKESYDEAVSYVDENFVYRVGEWVY 80

                          90       100
                  ....*....|....*....|....*
gi 497583903  213 AEDFNENRWKESTTGIHFFLTREEA 237
Cdd:pfam19062  81 AKNFNPDRWLDSTGGIHFWMTREEA 105
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
29-124 4.13e-17

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 76.13  E-value: 4.13e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  29 ADLKELRLENMDLRG---YCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSD 105
Cdd:COG1357   69 ADLSGANLTGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGAD 148

                         90
                 ....*....|....*....
gi 497583903 106 IRGANLENSNLEHATLNGV 124
Cdd:COG1357  149 LSGADLSGANLSGANLSGA 167
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
54-124 1.08e-07

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 48.04  E-value: 1.08e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 497583903   54 SDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGANLENSNLEHATLNGV 124
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDV 71
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
20-125 6.45e-06

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 46.60  E-value: 6.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  20 LKNNNAGEKADlKELRLENMDLRGYCLSNIDFSWSDLINLNLEKAD-LENSIFNNSYLSDCSLKNSILKNADlsgasFRF 98
Cdd:PRK15377 177 LTDARLRQEAG-EELTYADRDFSNADFRNINFSKINPSGFMLRDGDiIKGFNFSNSKFTYSDISHLHFDECR-----FTY 250

                         90       100
                 ....*....|....*....|....*..
gi 497583903  99 CDLSNSDIRGANLENSNLEHATLNGVI 125
Cdd:PRK15377 251 STLSDVVCSNTKFSNSDMNEASLKYSI 277
 
Name Accession Description Interval E-value
DUF5758 pfam19062
Family of unknown function (DUF5758); This is a family of uncharacterized proteins of unknown ...
 133-237 6.48e-74

Family of unknown function (DUF5758); This is a family of uncharacterized proteins of unknown function found in viruses, as well as in bacteria. It is predicted to be a pentapeptide repeat-containing protein.


Pssm-ID: 436932  Cd Length: 105  Bit Score: 219.80  E-value: 6.48e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  133 FKLYCPETGAFIGYKKCFNFRMVQLLIPSDAKRVSATSNACRCDKAKVLSITSIDGKESFKSARAYADENFIYRVGETIV 212
Cdd:pfam19062   1 FRLYCPEEGAFIAYKKCFNGRIVQLLIPADAKRTSATTNSCRCDKAKVLSIKSFDGKESYDEAVSYVDENFVYRVGEWVY 80

                          90       100
                  ....*....|....*....|....*
gi 497583903  213 AEDFNENRWKESTTGIHFFLTREEA 237
Cdd:pfam19062  81 AKNFNPDRWLDSTGGIHFWMTREEA 105
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
29-124 4.13e-17

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 76.13  E-value: 4.13e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  29 ADLKELRLENMDLRG---YCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSD 105
Cdd:COG1357   69 ADLSGANLTGADLSGanlANLSGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGAD 148

                         90
                 ....*....|....*....
gi 497583903 106 IRGANLENSNLEHATLNGV 124
Cdd:COG1357  149 LSGADLSGANLSGANLSGA 167
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
23-125 1.57e-16

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 74.59  E-value: 1.57e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  23 NNAGEKADLKELRLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNsiLKNADLSGASFRFCDLS 102
Cdd:COG1357   28 SGALSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADLSGANLAN--LSGANLSGANLSGANLR 105

                         90       100
                 ....*....|....*....|...
gi 497583903 103 NSDIRGANLENSNLEHATLNGVI 125
Cdd:COG1357  106 GANLSGANLSGADLSGADLSGAN 128
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
27-123 1.00e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 72.28  E-value: 1.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  27 EKADLKELRLENMDLRGYCLSNIDFSWSdLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDI 106
Cdd:COG1357    3 SGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGADL 81

                         90       100
                 ....*....|....*....|
gi 497583903 107 RGANL---ENSNLEHATLNG 123
Cdd:COG1357   82 SGANLanlSGANLSGANLSG 101
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
29-125 2.33e-15

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 71.51  E-value: 2.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  29 ADLKELRLENM---DLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSD 105
Cdd:COG1357   79 ADLSGANLANLsgaNLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGAN 158

                         90       100
                 ....*....|....*....|
gi 497583903 106 IRGANLENSNLehATLNGVI 125
Cdd:COG1357  159 LSGANLSGANL--ANLEGAD 176
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
30-124 1.72e-14

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 69.20  E-value: 1.72e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  30 DLKELRLENMDLRGYCLSNIDFSWSDLINLnLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGA 109
Cdd:COG1357    1 DLSGADLSGADLSGADLSGADLSGANLSGA-LSGANLSGANLSGANLTGANLSGADLSGADLSGANLSGADLSGANLTGA 79

                         90
                 ....*....|....*...
gi 497583903 110 NLENSNL---EHATLNGV 124
Cdd:COG1357   80 DLSGANLanlSGANLSGA 97
YjbI COG1357
Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];
27-117 1.51e-10

Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown];


Pssm-ID: 440968 [Multi-domain]  Cd Length: 178  Bit Score: 58.41  E-value: 1.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  27 EKADLKELRLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDI 106
Cdd:COG1357   90 SGANLSGANLSGANLRGANLSGANLSGADLSGADLSGANLSGADLSGANLSGANLSGADLSGADLSGANLSGANLSGANL 169

                         90
                 ....*....|.
gi 497583903 107 rgANLENSNLE 117
Cdd:COG1357  170 --ANLEGADLK 178
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
54-124 1.08e-07

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 48.04  E-value: 1.08e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 497583903   54 SDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGANLENSNLEHATLNGV 124
Cdd:pfam13599   1 ADFTRCSFEGCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDV 71
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 84-123 4.61e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 45.02  E-value: 4.61e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 497583903   84 SILKNADLSGASFRFCDLSNSDIRGANLENSNLEHATLNG 123
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 74-113 5.92e-07

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 45.02  E-value: 5.92e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 497583903   74 SYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGANLEN 113
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 89-125 4.82e-06

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 42.33  E-value: 4.82e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 497583903   89 ADLSGASFRFCDLSNSDIRGANLENSNLEHATLNGVI 125
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGAN 37
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
20-125 6.45e-06

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 46.60  E-value: 6.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  20 LKNNNAGEKADlKELRLENMDLRGYCLSNIDFSWSDLINLNLEKAD-LENSIFNNSYLSDCSLKNSILKNADlsgasFRF 98
Cdd:PRK15377 177 LTDARLRQEAG-EELTYADRDFSNADFRNINFSKINPSGFMLRDGDiIKGFNFSNSKFTYSDISHLHFDECR-----FTY 250

                         90       100
                 ....*....|....*....|....*..
gi 497583903  99 CDLSNSDIRGANLENSNLEHATLNGVI 125
Cdd:PRK15377 251 STLSDVVCSNTKFSNSDMNEASLKYSI 277
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 60-97 1.10e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.17  E-value: 1.10e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 497583903   60 NLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFR 97
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 79-117 1.18e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 41.17  E-value: 1.18e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 497583903   79 CSLKNSILKNADLSGASFRFCDLSNSDIRGANLENSNLE 117
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLS 39
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 69-108 1.54e-05

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 40.79  E-value: 1.54e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 497583903   69 SIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRG 108
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15197 PRK15197
type III secretion system effector PipB;
28-130 3.08e-05

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 44.15  E-value: 3.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  28 KADLKELRLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIR 107
Cdd:PRK15197 153 FLNLRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLT 232

                         90       100
                 ....*....|....*....|...
gi 497583903 108 GANLENSNLEHATLNGVISDEST 130
Cdd:PRK15197 233 AAILFGSDLTDTKLNGAKLDKIA 255
PRK15196 PRK15196
type III secretion system effector PipB2;
39-123 3.17e-05

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 44.23  E-value: 3.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  39 MDLRGYCLSNIDFSWSDLINLNLEKADLENSIFnnsYLSDCSLKNsiLKNADLSGASFRFCDLSN----------SDIRG 108
Cdd:PRK15196 152 MNLKGAVLTGANLTAENLCDADLSGANLEGAVL---FMADCEGAN--FKGANLSGTSLGDSNFKNacledsimcgATLDH 226

                         90
                 ....*....|....*
gi 497583903 109 ANLENSNLEHATLNG 123
Cdd:PRK15196 227 ANLTGANLQHASLLG 241
Pentapeptide_4 pfam13599
Pentapeptide repeats (9 copies);
48-116 6.40e-05

Pentapeptide repeats (9 copies);


Pssm-ID: 433339 [Multi-domain]  Cd Length: 78  Bit Score: 40.34  E-value: 6.40e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 497583903   48 NIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGANLENSNL 116
Cdd:pfam13599  10 GCKLSGTEFYHATLKDCNFTECNLVNVNFDDCNLRDVDFLEAQLKNAQFSGCNLKNSNFSDVKLKGADF 78
PRK15377 PRK15377
type III secretion system effector HECT-type E3 ubiquitin transferase;
25-200 8.49e-05

type III secretion system effector HECT-type E3 ubiquitin transferase;


Pssm-ID: 185275 [Multi-domain]  Cd Length: 782  Bit Score: 43.13  E-value: 8.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  25 AGEKADLKELRLENMDLRGYCLSNIDFS-----------WSDLINLNLEKADLENSIFNN-----SYLSDC-----SLKN 83
Cdd:PRK15377 186 AGEELTYADRDFSNADFRNINFSKINPSgfmlrdgdiikGFNFSNSKFTYSDISHLHFDEcrftySTLSDVvcsntKFSN 265

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  84 SILKNADLSGAS-------FRFCDLSNSDIRganlENSNLEHATLNGVISDESTRFFKLYCpetgafigYKKCFNFRMVQ 156
Cdd:PRK15377 266 SDMNEASLKYSIttqqqpsFIETTLKNTIII----HKANLSGVILNEPDNSSPPSVSLGGN--------FIRLGDIWLQM 333

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 497583903 157 LLIPSDAKRVSATSNACRCDKAKVLSITSIDGKESFKSARAYAD 200
Cdd:PRK15377 334 PLLWTENAIDGFLNHEHNNGKSILMTINTLPDKYNQEKVRAMEE 377
PRK15196 PRK15196
type III secretion system effector PipB2;
36-125 1.30e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 42.30  E-value: 1.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  36 LENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGANLENSN 115
Cdd:PRK15196 174 LSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGAN 253

                         90
                 ....*....|
gi 497583903 116 LEHATLNGVI 125
Cdd:PRK15196 254 MDHTNLSGAT 263
PRK15197 PRK15197
type III secretion system effector PipB;
30-124 1.39e-04

type III secretion system effector PipB;


Pssm-ID: 185119 [Multi-domain]  Cd Length: 291  Bit Score: 42.22  E-value: 1.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  30 DLKELRLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRGA 109
Cdd:PRK15197 170 DLSDIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGA 249

                         90
                 ....*....|....*.
gi 497583903 110 NLENSNLEHA-TLNGV 124
Cdd:PRK15197 250 KLDKIALTLAkALTGA 265
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 54-93 3.02e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.32  E-value: 3.02e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 497583903   54 SDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSG 93
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 64-103 3.34e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 37.32  E-value: 3.34e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 497583903   64 ADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSN 103
Cdd:pfam00805   1 ANLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
PRK15196 PRK15196
type III secretion system effector PipB2;
27-130 6.34e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 40.37  E-value: 6.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  27 EKADLKELRLENMDLRGYCLSNIDFSWSDLINLNLE-----KADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDL 101
Cdd:PRK15196 225 DHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSgatliRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNL 304

                         90       100
                 ....*....|....*....|....*....
gi 497583903 102 SNSDIRGANLENSNLEHATLNGVISDEST 130
Cdd:PRK15196 305 DGADLAEANLNNTCFKDCTLTHLRTEDAT 333
PRK15196 PRK15196
type III secretion system effector PipB2;
29-123 6.46e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 40.37  E-value: 6.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  29 ADLKELRLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSnsdirG 108
Cdd:PRK15196 177 ANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCS-----G 251

                         90
                 ....*....|....*
gi 497583903 109 ANLENSNLEHATLNG 123
Cdd:PRK15196 252 ANMDHTNLSGATLIR 266
PRK15196 PRK15196
type III secretion system effector PipB2;
29-121 8.11e-04

type III secretion system effector PipB2;


Pssm-ID: 185118 [Multi-domain]  Cd Length: 350  Bit Score: 39.99  E-value: 8.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 497583903  29 ADLKELRLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKNADLSGASFRFCDLSNSDIRG 108
Cdd:PRK15196 197 ANLSGTSLGDSNFKNACLEDSIMCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQG 276

                         90
                 ....*....|...
gi 497583903 109 ANLENSNLEHATL 121
Cdd:PRK15196 277 ATIMAAIMEGAVL 289
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 45-83 8.12e-04

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 36.16  E-value: 8.12e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 497583903   45 CLSNIDFSWSDLINLNLEKADLENSIFNNSYLSDCSLKN 83
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 50-88 1.46e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.39  E-value: 1.46e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 497583903   50 DFSWSDLINLNLEKADLENSIFNNSYLSDCSLKNSILKN 88
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
Pentapeptide pfam00805
Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The ...
 35-73 2.25e-03

Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.


Pssm-ID: 459943 [Multi-domain]  Cd Length: 40  Bit Score: 35.01  E-value: 2.25e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 497583903   35 RLENMDLRGYCLSNIDFSWSDLINLNLEKADLENSIFNN 73
Cdd:pfam00805   2 NLSGANLSGANLSGANLSGANLTGANLSGADLSGANLSG 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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