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Conserved domains on  [gi|497634730|ref|WP_009948914|]
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IS701 family transposase, partial [Saccharopolyspora erythraea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Srso17 super family cl44277
SRSO17 transposase [Mobilome: prophages, transposons];
1-41 1.59e-11

SRSO17 transposase [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG5659:

Pssm-ID: 444378 [Multi-domain]  Cd Length: 417  Bit Score: 55.78  E-value: 1.59e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 497634730   1 LGLDHFEGRSLAGWYRHVTLVSLAQAICTQLRYDPKAPAPA 41
Cdd:COG5659  352 LGLDHYEGRSWRGWHRHVTLVMAAYAFLALERLAANDSKPK 392
 
Name Accession Description Interval E-value
Srso17 COG5659
SRSO17 transposase [Mobilome: prophages, transposons];
1-41 1.59e-11

SRSO17 transposase [Mobilome: prophages, transposons];


Pssm-ID: 444378 [Multi-domain]  Cd Length: 417  Bit Score: 55.78  E-value: 1.59e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 497634730   1 LGLDHFEGRSLAGWYRHVTLVSLAQAICTQLRYDPKAPAPA 41
Cdd:COG5659  352 LGLDHYEGRSWRGWHRHVTLVMAAYAFLALERLAANDSKPK 392
transpos_IS701 NF033540
IS701 family transposase; Members of this family are transposases in the family of that of ...
 1-31 6.28e-09

IS701 family transposase; Members of this family are transposases in the family of that of insertion element IS701, narrowly defined. Note that a molecular phylogenetic tree of the broader sets of transposases from IS elements classified as IS701 family or IS4 family by ISFINDER shows the two groups interleaved. This model represents an unambiguous clade that includes IS701 itself and the majority of proteins called IS701 family. The poorly conserved C-terminal region of members of this family is not included in the seed alignment.


Pssm-ID: 468071 [Multi-domain]  Cd Length: 345  Bit Score: 48.42  E-value: 6.28e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 497634730   1 LGLDHFEGRSLAGWYRHVTLVSLAQAICTQL 31
Cdd:NF033540 315 LGLDHYEVRSWRGIHRHWTLVMLAYAFLTLL 345
 
Name Accession Description Interval E-value
Srso17 COG5659
SRSO17 transposase [Mobilome: prophages, transposons];
1-41 1.59e-11

SRSO17 transposase [Mobilome: prophages, transposons];


Pssm-ID: 444378 [Multi-domain]  Cd Length: 417  Bit Score: 55.78  E-value: 1.59e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 497634730   1 LGLDHFEGRSLAGWYRHVTLVSLAQAICTQLRYDPKAPAPA 41
Cdd:COG5659  352 LGLDHYEGRSWRGWHRHVTLVMAAYAFLALERLAANDSKPK 392
transpos_IS701 NF033540
IS701 family transposase; Members of this family are transposases in the family of that of ...
 1-31 6.28e-09

IS701 family transposase; Members of this family are transposases in the family of that of insertion element IS701, narrowly defined. Note that a molecular phylogenetic tree of the broader sets of transposases from IS elements classified as IS701 family or IS4 family by ISFINDER shows the two groups interleaved. This model represents an unambiguous clade that includes IS701 itself and the majority of proteins called IS701 family. The poorly conserved C-terminal region of members of this family is not included in the seed alignment.


Pssm-ID: 468071 [Multi-domain]  Cd Length: 345  Bit Score: 48.42  E-value: 6.28e-09
                         10        20        30
                 ....*....|....*....|....*....|.
gi 497634730   1 LGLDHFEGRSLAGWYRHVTLVSLAQAICTQL 31
Cdd:NF033540 315 LGLDHYEVRSWRGIHRHWTLVMLAYAFLTLL 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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